RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 PMFBP1Q8TBY8 1022 aa21.28■■□□□ 1
PRPF40A-211ENST00000493468 TULP4Q9NRJ4 1543 aa21.28■■□□□ 1
PRPF40A-211ENST00000493468 PARD3Q8TEW0 1356 aa21.27■■□□□ 1
PRPF40A-211ENST00000493468 CFAP70Q5T0N1 1121 aa21.27■■□□□ 1
PRPF40A-211ENST00000493468 RREB1Q92766 1687 aa21.27■■□□□ 1
PRPF40A-211ENST00000493468 ADGRB1O14514 1584 aa21.27■□□□□ 0.99
PRPF40A-211ENST00000493468 ACIN1Q9UKV3 1341 aaKnown RBP21.26■□□□□ 0.99
PRPF40A-211ENST00000493468 SAFB2Q14151 953 aaKnown RBP eCLIP21.25■□□□□ 0.99
PRPF40A-211ENST00000493468 POGKQ9P215 609 aa21.24■□□□□ 0.99
PRPF40A-211ENST00000493468 ITSN1Q15811 1721 aa21.24■□□□□ 0.99
PRPF40A-211ENST00000493468 PHRF1Q9P1Y6 1649 aaKnown RBP21.23■□□□□ 0.99
PRPF40A-211ENST00000493468 FAM182BQ5T319 152 aa21.23■□□□□ 0.99
PRPF40A-211ENST00000493468 NUP188Q5SRE5 1749 aa21.22■□□□□ 0.99
PRPF40A-211ENST00000493468 EZH2Q15910 746 aaKnown RBP21.22■□□□□ 0.99
PRPF40A-211ENST00000493468 CAMKK2Q96RR4 588 aa21.22■□□□□ 0.99
PRPF40A-211ENST00000493468 SPATA31A1Q5TZJ5 1347 aa21.21■□□□□ 0.99
PRPF40A-211ENST00000493468 PRR36Q9H6K5 1346 aa21.21■□□□□ 0.99
PRPF40A-211ENST00000493468 FAM196AQ6ZSG2 479 aa21.2■□□□□ 0.98
PRPF40A-211ENST00000493468 PRDM11Q9NQV5 511 aa21.2■□□□□ 0.98
PRPF40A-211ENST00000493468 ATP7BP35670 1465 aa21.18■□□□□ 0.98
PRPF40A-211ENST00000493468 KIAA0232Q92628 1395 aa21.16■□□□□ 0.98
PRPF40A-211ENST00000493468 TRIM37O94972 964 aa21.16■□□□□ 0.98
PRPF40A-211ENST00000493468 WASLO00401 505 aaPredicted RBP21.15■□□□□ 0.98
PRPF40A-211ENST00000493468 HIRIP3Q9BW71 556 aaPredicted RBP21.15■□□□□ 0.98
PRPF40A-211ENST00000493468 MINK1Q8N4C8 1332 aaPredicted RBP21.14■□□□□ 0.97
PRPF40A-211ENST00000493468 NGDNQ8NEJ9 315 aaKnown RBP21.14■□□□□ 0.97
PRPF40A-211ENST00000493468 ARHGEF28Q8N1W1 1705 aaKnown RBP21.13■□□□□ 0.97
PRPF40A-211ENST00000493468 APBA3O96018 575 aa21.13■□□□□ 0.97
PRPF40A-211ENST00000493468 PAK3O75914 559 aaPredicted RBP21.12■□□□□ 0.97
PRPF40A-211ENST00000493468 BARGINQ6ZT62 677 aa21.12■□□□□ 0.97
PRPF40A-211ENST00000493468 TRAK1Q9UPV9 953 aa21.12■□□□□ 0.97
PRPF40A-211ENST00000493468 SSH2Q76I76 1423 aa21.12■□□□□ 0.97
PRPF40A-211ENST00000493468 RGPD3A6NKT7 1758 aaPredicted RBP21.11■□□□□ 0.97
PRPF40A-211ENST00000493468 RGPD4Q7Z3J3 1758 aa21.11■□□□□ 0.97
PRPF40A-211ENST00000493468 YY1P25490 414 aa21.11■□□□□ 0.97
PRPF40A-211ENST00000493468 TOPAZ1Q8N9V7 1692 aa21.11■□□□□ 0.97
PRPF40A-211ENST00000493468 LMO7Q8WWI1 1683 aa21.11■□□□□ 0.97
PRPF40A-211ENST00000493468 NRKQ7Z2Y5 1582 aa21.1■□□□□ 0.97
PRPF40A-211ENST00000493468 PARP4Q9UKK3 1724 aaKnown RBP21.1■□□□□ 0.97
PRPF40A-211ENST00000493468 NBPF8Q3BBV2 869 aa21.09■□□□□ 0.97
PRPF40A-211ENST00000493468 NBPF14Q5TI25 921 aa21.09■□□□□ 0.97
PRPF40A-211ENST00000493468 CHRNA2Q15822 529 aa21.08■□□□□ 0.97
PRPF40A-211ENST00000493468 STRN4Q9NRL3 753 aa21.08■□□□□ 0.97
PRPF40A-211ENST00000493468 NINLQ9Y2I6 1382 aa21.08■□□□□ 0.96
PRPF40A-211ENST00000493468 PDE3BQ13370 1112 aa21.07■□□□□ 0.96
PRPF40A-211ENST00000493468 CAMTA1Q9Y6Y1 1673 aa21.06■□□□□ 0.96
PRPF40A-211ENST00000493468 POLR3AO14802 1390 aaPredicted RBP21.06■□□□□ 0.96
PRPF40A-211ENST00000493468 CPDO75976 1380 aa21.05■□□□□ 0.96
PRPF40A-211ENST00000493468 C11orf95C9JLR9 678 aaPredicted RBP21.04■□□□□ 0.96
PRPF40A-211ENST00000493468 ZC3H6P61129 1189 aaKnown RBP21.04■□□□□ 0.96
PRPF40A-211ENST00000493468 NUDT16Q96DE0 195 aaKnown RBP21.04■□□□□ 0.96
PRPF40A-211ENST00000493468 STAC3Q96MF2 364 aa21.04■□□□□ 0.96
PRPF40A-211ENST00000493468 SPON1Q9HCB6 807 aa21.04■□□□□ 0.96
PRPF40A-211ENST00000493468 PEAK1Q9H792 1746 aa21.04■□□□□ 0.96
PRPF40A-211ENST00000493468 TCP11L2Q8N4U5 519 aa21.03■□□□□ 0.96
PRPF40A-211ENST00000493468 THRAP3Q9Y2W1 955 aaKnown RBP21.03■□□□□ 0.96
PRPF40A-211ENST00000493468 SBF2Q86WG5 1849 aa21.02■□□□□ 0.96
PRPF40A-211ENST00000493468 EVA1CP58658 441 aa21.02■□□□□ 0.96
PRPF40A-211ENST00000493468 USP35Q9P2H5 1018 aa21.02■□□□□ 0.96
PRPF40A-211ENST00000493468 KCNQ2O43526 872 aa21.01■□□□□ 0.95
PRPF40A-211ENST00000493468 USP19O94966 1318 aa21.01■□□□□ 0.95
PRPF40A-211ENST00000493468 CASZ1Q86V15 1759 aa21■□□□□ 0.95
PRPF40A-211ENST00000493468 LARP1Q6PKG0 1096 aaKnown RBP21■□□□□ 0.95
PRPF40A-211ENST00000493468 PPP1R1BQ9UD71 204 aaPredicted RBP21■□□□□ 0.95
PRPF40A-211ENST00000493468 DCAF8L1A6NGE4 600 aa20.99■□□□□ 0.95
PRPF40A-211ENST00000493468 OVOS2A0A0G2JMS6 1433 aa20.98■□□□□ 0.95
PRPF40A-211ENST00000493468 OVOS2A0A0J9YW53 1432 aa20.98■□□□□ 0.95
PRPF40A-211ENST00000493468 OVOS2Q6IE36 1432 aa20.98■□□□□ 0.95
PRPF40A-211ENST00000493468 COL5A2P05997 1499 aaPredicted RBP20.98■□□□□ 0.95
PRPF40A-211ENST00000493468 ACEP12821 1306 aa20.98■□□□□ 0.95
PRPF40A-211ENST00000493468 LRRC37A3O60309 1634 aa20.97■□□□□ 0.95
PRPF40A-211ENST00000493468 NUTM2GQ5VZR2 741 aa20.97■□□□□ 0.95
PRPF40A-211ENST00000493468 PLEKHG3A1L390 1219 aa20.96■□□□□ 0.95
PRPF40A-211ENST00000493468 DCAF11Q8TEB1 546 aa20.96■□□□□ 0.95
PRPF40A-211ENST00000493468 CCDC61Q9Y6R9 512 aa20.96■□□□□ 0.95
PRPF40A-211ENST00000493468 WNK3Q9BYP7 1800 aa20.96■□□□□ 0.95
PRPF40A-211ENST00000493468 KIAA1210Q9ULL0 1709 aa20.95■□□□□ 0.94
PRPF40A-211ENST00000493468 CDK19Q9BWU1 502 aa20.95■□□□□ 0.94
PRPF40A-211ENST00000493468 CRB1P82279 1406 aa20.95■□□□□ 0.94
PRPF40A-211ENST00000493468 PLSCR1O15162 318 aa20.94■□□□□ 0.94
PRPF40A-211ENST00000493468 ABTB2Q8N961 1025 aa20.94■□□□□ 0.94
PRPF40A-211ENST00000493468 KDM2AQ9Y2K7 1162 aa20.94■□□□□ 0.94
PRPF40A-211ENST00000493468 BRD4O60885 1362 aaPredicted RBP20.92■□□□□ 0.94
PRPF40A-211ENST00000493468 AKAP12Q02952 1782 aa20.91■□□□□ 0.94
PRPF40A-211ENST00000493468 RAB3GAP2Q9H2M9 1393 aa20.91■□□□□ 0.94
PRPF40A-211ENST00000493468 BCL9O00512 1426 aa20.9■□□□□ 0.94
PRPF40A-211ENST00000493468 GCP02774 474 aa20.9■□□□□ 0.94
PRPF40A-211ENST00000493468 NLRP13Q86W25 1043 aa20.9■□□□□ 0.94
PRPF40A-211ENST00000493468 MYOM1P52179 1685 aa20.89■□□□□ 0.94
PRPF40A-211ENST00000493468 SLIT3O75094 1523 aa20.89■□□□□ 0.94
PRPF40A-211ENST00000493468 ANO8Q9HCE9 1232 aaPredicted RBP20.88■□□□□ 0.93
PRPF40A-211ENST00000493468 COL18A1P39060 1754 aa20.87■□□□□ 0.93
PRPF40A-211ENST00000493468 AATKQ6ZMQ8 1374 aa20.87■□□□□ 0.93
PRPF40A-211ENST00000493468 BCL11BQ9C0K0 894 aaPredicted RBP20.86■□□□□ 0.93
PRPF40A-211ENST00000493468 CHD4Q14839 1912 aa20.86■□□□□ 0.93
PRPF40A-211ENST00000493468 PPIP5K1Q6PFW1 1433 aa20.86■□□□□ 0.93
PRPF40A-211ENST00000493468 DDB1Q16531 1140 aa20.85■□□□□ 0.93
PRPF40A-211ENST00000493468 UTRNP46939 3433 aa20.84■□□□□ 0.93
PRPF40A-211ENST00000493468 PIK3C2AO00443 1686 aa20.82■□□□□ 0.92
PRPF40A-211ENST00000493468 QRICH2Q9H0J4 1663 aa20.82■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms