RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 USP17L10C9JJH3 530 aa7.45□□□□□ -1.22
VPS13A-212ENST00000493341 USP17L13C9JLJ4 530 aa7.45□□□□□ -1.22
VPS13A-212ENST00000493341 USP17L12C9JPN9 530 aa7.45□□□□□ -1.22
VPS13A-212ENST00000493341 USP17L11C9JVI0 530 aa7.45□□□□□ -1.22
VPS13A-212ENST00000493341 USP17L21D6R901 530 aa7.45□□□□□ -1.22
VPS13A-212ENST00000493341 USP17L18D6R9N7 530 aa7.45□□□□□ -1.22
VPS13A-212ENST00000493341 USP17L22D6RA61 530 aa7.45□□□□□ -1.22
VPS13A-212ENST00000493341 USP17L17D6RBQ6 530 aa7.45□□□□□ -1.22
VPS13A-212ENST00000493341 USP17L19D6RCP7 530 aa7.45□□□□□ -1.22
VPS13A-212ENST00000493341 USP17L20D6RJB6 530 aa7.45□□□□□ -1.22
VPS13A-212ENST00000493341 RASA1P20936 1047 aa7.45□□□□□ -1.22
VPS13A-212ENST00000493341 USP17L24Q0WX57 530 aa7.45□□□□□ -1.22
VPS13A-212ENST00000493341 POTEJP0CG39 1038 aa7.45□□□□□ -1.22
VPS13A-212ENST00000493341 Q3C1V9 767 aa7.45□□□□□ -1.22
VPS13A-212ENST00000493341 KMT5BQ4FZB7 885 aa7.45□□□□□ -1.22
VPS13A-212ENST00000493341 LARP1Q6PKG0 1096 aaKnown RBP7.45□□□□□ -1.22
VPS13A-212ENST00000493341 FAM174AQ8TBP5 190 aa7.45□□□□□ -1.22
VPS13A-212ENST00000493341 FAM200AQ8TCP9 573 aa7.45□□□□□ -1.22
VPS13A-212ENST00000493341 NCOA4Q13772 614 aa7.44□□□□□ -1.22
VPS13A-212ENST00000493341 MORN1Q5T089 497 aa7.44□□□□□ -1.22
VPS13A-212ENST00000493341 HOXB1P14653 301 aaPredicted RBP7.44□□□□□ -1.22
VPS13A-212ENST00000493341 SLFNL1Q499Z3 407 aa7.44□□□□□ -1.22
VPS13A-212ENST00000493341 PLEKHM2Q8IWE5 1019 aa7.44□□□□□ -1.22
VPS13A-212ENST00000493341 SERPINB4P48594 390 aa7.43□□□□□ -1.22
VPS13A-212ENST00000493341 PTK7Q13308 1070 aa7.43□□□□□ -1.22
VPS13A-212ENST00000493341 MRRFQ96E11 262 aaKnown RBP7.43□□□□□ -1.22
VPS13A-212ENST00000493341 SLAIN2Q9P270 581 aa7.43□□□□□ -1.22
VPS13A-212ENST00000493341 DNAJC14Q6Y2X3 702 aaPredicted RBP7.42□□□□□ -1.22
VPS13A-212ENST00000493341 MAP10Q9P2G4 905 aa7.42□□□□□ -1.22
VPS13A-212ENST00000493341 ERCC3P19447 782 aa7.42□□□□□ -1.22
VPS13A-212ENST00000493341 RNF19BQ6ZMZ0 732 aa7.42□□□□□ -1.22
VPS13A-212ENST00000493341 BIN2Q9UBW5 565 aaPredicted RBP7.42□□□□□ -1.22
VPS13A-212ENST00000493341 SOWAHDA6NJG2 315 aa7.41□□□□□ -1.22
VPS13A-212ENST00000493341 ATP5J2-PTCD1G3V325 749 aa7.41□□□□□ -1.22
VPS13A-212ENST00000493341 SCNN1AP37088 669 aa7.41□□□□□ -1.22
VPS13A-212ENST00000493341 FAM69CQ0P6D2 419 aa7.41□□□□□ -1.22
VPS13A-212ENST00000493341 BLOC1S3Q6QNY0 202 aa7.41□□□□□ -1.22
VPS13A-212ENST00000493341 USB1Q9BQ65 265 aaKnown RBP7.41□□□□□ -1.22
VPS13A-212ENST00000493341 CEP126Q9P2H0 1117 aa7.41□□□□□ -1.22
VPS13A-212ENST00000493341 ATP2B4P23634 1241 aa7.4□□□□□ -1.22
VPS13A-212ENST00000493341 CTHP32929 405 aa7.4□□□□□ -1.22
VPS13A-212ENST00000493341 MARSP56192 900 aaKnown RBP7.4□□□□□ -1.22
VPS13A-212ENST00000493341 KCNH2Q12809 1159 aa7.4□□□□□ -1.22
VPS13A-212ENST00000493341 MAMSTRQ6ZN01 415 aa7.4□□□□□ -1.22
VPS13A-212ENST00000493341 RNF135Q8IUD6 432 aa7.4□□□□□ -1.22
VPS13A-212ENST00000493341 CDCA7Q9BWT1 371 aaPredicted RBP7.4□□□□□ -1.22
VPS13A-212ENST00000493341 BCL2L13Q9BXK5 485 aa7.4□□□□□ -1.22
VPS13A-212ENST00000493341 SCUBE2Q9NQ36 999 aa7.4□□□□□ -1.22
VPS13A-212ENST00000493341 KIAA1522Q9P206 1035 aaPredicted RBP7.4□□□□□ -1.22
VPS13A-212ENST00000493341 ARHGAP33O14559 1287 aa7.4□□□□□ -1.23
VPS13A-212ENST00000493341 ANKMY2Q8IV38 441 aa7.4□□□□□ -1.23
VPS13A-212ENST00000493341 CLP1Q92989 425 aaKnown RBP7.4□□□□□ -1.23
VPS13A-212ENST00000493341 ZNF594Q96JF6 807 aaPredicted RBP7.4□□□□□ -1.23
VPS13A-212ENST00000493341 AXIN2Q9Y2T1 843 aa7.4□□□□□ -1.23
VPS13A-212ENST00000493341 PLPP7Q8NBV4 271 aa7.39□□□□□ -1.23
VPS13A-212ENST00000493341 ACTN4O43707 911 aaKnown RBP7.39□□□□□ -1.23
VPS13A-212ENST00000493341 F12P00748 615 aaPredicted RBP7.39□□□□□ -1.23
VPS13A-212ENST00000493341 ZNF16P17020 682 aaPredicted RBP7.39□□□□□ -1.23
VPS13A-212ENST00000493341 DPYDQ12882 1025 aa7.39□□□□□ -1.23
VPS13A-212ENST00000493341 DMRTA1Q5VZB9 504 aa7.39□□□□□ -1.23
VPS13A-212ENST00000493341 OGFOD1Q8N543 542 aa7.39□□□□□ -1.23
VPS13A-212ENST00000493341 SIRT1Q96EB6 747 aa7.39□□□□□ -1.23
VPS13A-212ENST00000493341 PCDHB9Q9Y5E1 797 aa7.39□□□□□ -1.23
VPS13A-212ENST00000493341 ZC3H4Q9UPT8 1303 aaKnown RBP7.38□□□□□ -1.23
VPS13A-212ENST00000493341 SNPHO15079 494 aa7.38□□□□□ -1.23
VPS13A-212ENST00000493341 GIPC2Q8TF65 315 aa7.38□□□□□ -1.23
VPS13A-212ENST00000493341 SLC4A5Q9BY07 1137 aa7.38□□□□□ -1.23
VPS13A-212ENST00000493341 EML3Q32P44 896 aa7.37□□□□□ -1.23
VPS13A-212ENST00000493341 NOM1Q5C9Z4 860 aaKnown RBP7.37□□□□□ -1.23
VPS13A-212ENST00000493341 ZFRQ96KR1 1074 aaKnown RBP7.37□□□□□ -1.23
VPS13A-212ENST00000493341 IGSF5Q9NSI5 407 aa7.37□□□□□ -1.23
VPS13A-212ENST00000493341 PTK2Q05397 1052 aa7.37□□□□□ -1.23
VPS13A-212ENST00000493341 LAPTM4BQ86VI4 370 aa7.37□□□□□ -1.23
VPS13A-212ENST00000493341 ZNF592Q92610 1267 aa7.37□□□□□ -1.23
VPS13A-212ENST00000493341 NBPF3Q9H094 633 aa7.37□□□□□ -1.23
VPS13A-212ENST00000493341 VPS9D1Q9Y2B5 631 aa7.37□□□□□ -1.23
VPS13A-212ENST00000493341 CLDN10P78369 228 aa7.36□□□□□ -1.23
VPS13A-212ENST00000493341 PTPRNQ16849 979 aa7.36□□□□□ -1.23
VPS13A-212ENST00000493341 ANKRD33BA6NCL7 494 aa7.35□□□□□ -1.23
VPS13A-212ENST00000493341 LZTS3O60299 673 aaPredicted RBP7.35□□□□□ -1.23
VPS13A-212ENST00000493341 ABL1P00519 1130 aa7.35□□□□□ -1.23
VPS13A-212ENST00000493341 SWI5Q1ZZU3 235 aa7.35□□□□□ -1.23
VPS13A-212ENST00000493341 BRICD5Q6PL45 260 aa7.35□□□□□ -1.23
VPS13A-212ENST00000493341 POTEEQ6S8J3 1075 aa7.35□□□□□ -1.23
VPS13A-212ENST00000493341 PRMT3O60678 531 aa7.35□□□□□ -1.23
VPS13A-212ENST00000493341 SCUBE3Q8IX30 993 aa7.35□□□□□ -1.23
VPS13A-212ENST00000493341 PHTF2Q8N3S3 785 aa7.35□□□□□ -1.23
VPS13A-212ENST00000493341 TSGA10IPQ3SY00 556 aa7.34□□□□□ -1.23
VPS13A-212ENST00000493341 LRCH3Q96II8 777 aa7.34□□□□□ -1.23
VPS13A-212ENST00000493341 PRR14Q9BWN1 585 aa7.34□□□□□ -1.23
VPS13A-212ENST00000493341 DNAAF2Q9NVR5 837 aaKnown RBP7.34□□□□□ -1.23
VPS13A-212ENST00000493341 SALL2Q9Y467 1007 aaPredicted RBP7.34□□□□□ -1.23
VPS13A-212ENST00000493341 GPSM3Q9Y4H4 160 aa7.34□□□□□ -1.23
VPS13A-212ENST00000493341 FMNL1O95466 1100 aaPredicted RBP7.34□□□□□ -1.24
VPS13A-212ENST00000493341 JUNDP17535 347 aa7.34□□□□□ -1.24
VPS13A-212ENST00000493341 MAP7D1Q3KQU3 841 aa7.34□□□□□ -1.24
VPS13A-212ENST00000493341 PDXDC2PQ6P474 469 aa7.34□□□□□ -1.24
VPS13A-212ENST00000493341 ATP1A2P50993 1020 aa7.33□□□□□ -1.24
VPS13A-212ENST00000493341 MCCD1P59942 119 aaPredicted RBP7.33□□□□□ -1.24
VPS13A-212ENST00000493341 VARS2Q5ST30 1063 aaKnown RBP7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 74 ms