RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 FAM83GA6ND36 823 aa20.34■□□□□ 0.85
UPF3A-204ENST00000475218 NBPF8Q3BBV2 869 aa20.34■□□□□ 0.85
UPF3A-204ENST00000475218 NRAPQ86VF7 1730 aa20.33■□□□□ 0.85
UPF3A-204ENST00000475218 ACEP12821 1306 aa20.33■□□□□ 0.84
UPF3A-204ENST00000475218 PLEKHG3A1L390 1219 aa20.33■□□□□ 0.84
UPF3A-204ENST00000475218 CCDC61Q9Y6R9 512 aa20.33■□□□□ 0.84
UPF3A-204ENST00000475218 HAP1P54257 671 aaPredicted RBP20.32■□□□□ 0.84
UPF3A-204ENST00000475218 PHRF1Q9P1Y6 1649 aaKnown RBP20.31■□□□□ 0.84
UPF3A-204ENST00000475218 CABP2Q9NPB3 220 aa20.3■□□□□ 0.84
UPF3A-204ENST00000475218 COL14A1Q05707 1796 aaKnown RBP20.29■□□□□ 0.84
UPF3A-204ENST00000475218 PAK3O75914 559 aaPredicted RBP20.29■□□□□ 0.84
UPF3A-204ENST00000475218 VPS72Q15906 364 aa20.29■□□□□ 0.84
UPF3A-204ENST00000475218 BRWD3Q6RI45 1802 aa20.28■□□□□ 0.84
UPF3A-204ENST00000475218 PPIP5K1Q6PFW1 1433 aa20.28■□□□□ 0.84
UPF3A-204ENST00000475218 ROCK2O75116 1388 aaKnown RBP20.28■□□□□ 0.84
UPF3A-204ENST00000475218 TRIM26Q12899 539 aaPredicted RBP20.27■□□□□ 0.84
UPF3A-204ENST00000475218 ATAD2Q6PL18 1390 aa20.27■□□□□ 0.84
UPF3A-204ENST00000475218 SRPK2P78362 688 aaKnown RBP20.26■□□□□ 0.83
UPF3A-204ENST00000475218 NUTM2GQ5VZR2 741 aa20.24■□□□□ 0.83
UPF3A-204ENST00000475218 BTG4Q9NY30 223 aa20.24■□□□□ 0.83
UPF3A-204ENST00000475218 NRKQ7Z2Y5 1582 aa20.24■□□□□ 0.83
UPF3A-204ENST00000475218 ONECUT3O60422 494 aaPredicted RBP20.23■□□□□ 0.83
UPF3A-204ENST00000475218 KIAA0232Q92628 1395 aa20.22■□□□□ 0.83
UPF3A-204ENST00000475218 CABP1Q9NZU7 370 aa20.22■□□□□ 0.83
UPF3A-204ENST00000475218 SSH2Q76I76 1423 aa20.21■□□□□ 0.83
UPF3A-204ENST00000475218 USP19O94966 1318 aa20.21■□□□□ 0.83
UPF3A-204ENST00000475218 USP6P35125 1406 aa20.2■□□□□ 0.82
UPF3A-204ENST00000475218 SEPT12Q8IYM1 358 aa20.2■□□□□ 0.82
UPF3A-204ENST00000475218 CHRNA2Q15822 529 aa20.19■□□□□ 0.82
UPF3A-204ENST00000475218 EVC2Q86UK5 1308 aa20.19■□□□□ 0.82
UPF3A-204ENST00000475218 PRDM11Q9NQV5 511 aa20.18■□□□□ 0.82
UPF3A-204ENST00000475218 ABTB2Q8N961 1025 aa20.18■□□□□ 0.82
UPF3A-204ENST00000475218 CCDC9Q9Y3X0 531 aaKnown RBP20.18■□□□□ 0.82
UPF3A-204ENST00000475218 LMO7Q8WWI1 1683 aa20.18■□□□□ 0.82
UPF3A-204ENST00000475218 TONSLQ96HA7 1378 aa20.18■□□□□ 0.82
UPF3A-204ENST00000475218 PIK3C2AO00443 1686 aa20.17■□□□□ 0.82
UPF3A-204ENST00000475218 ZC3H6P61129 1189 aaKnown RBP20.17■□□□□ 0.82
UPF3A-204ENST00000475218 SPATA31A5Q5VU36 1347 aa20.17■□□□□ 0.82
UPF3A-204ENST00000475218 SPATA31A7Q8IWB4 1347 aa20.17■□□□□ 0.82
UPF3A-204ENST00000475218 AKAP12Q02952 1782 aa20.16■□□□□ 0.82
UPF3A-204ENST00000475218 SBNO2Q9Y2G9 1366 aa20.16■□□□□ 0.82
UPF3A-204ENST00000475218 BRD4O60885 1362 aaPredicted RBP20.16■□□□□ 0.82
UPF3A-204ENST00000475218 THSD7AQ9UPZ6 1657 aa20.15■□□□□ 0.82
UPF3A-204ENST00000475218 CAMTA1Q9Y6Y1 1673 aa20.15■□□□□ 0.82
UPF3A-204ENST00000475218 CPDO75976 1380 aa20.15■□□□□ 0.82
UPF3A-204ENST00000475218 FAM98CQ17RN3 349 aaKnown RBP20.15■□□□□ 0.82
UPF3A-204ENST00000475218 CARD11Q9BXL7 1154 aa20.14■□□□□ 0.81
UPF3A-204ENST00000475218 SLIT3O75094 1523 aa20.14■□□□□ 0.81
UPF3A-204ENST00000475218 CPSF1Q10570 1443 aaKnown RBP20.13■□□□□ 0.81
UPF3A-204ENST00000475218 GCP02774 474 aa20.12■□□□□ 0.81
UPF3A-204ENST00000475218 NLRP13Q86W25 1043 aa20.11■□□□□ 0.81
UPF3A-204ENST00000475218 SPATA31A1Q5TZJ5 1347 aa20.11■□□□□ 0.81
UPF3A-204ENST00000475218 SRCAPQ6ZRS2 3230 aa20.11■□□□□ 0.81
UPF3A-204ENST00000475218 KRT27Q7Z3Y8 459 aa20.11■□□□□ 0.81
UPF3A-204ENST00000475218 CD163L1Q9NR16 1453 aa20.11■□□□□ 0.81
UPF3A-204ENST00000475218 BLMP54132 1417 aaPredicted RBP20.1■□□□□ 0.81
UPF3A-204ENST00000475218 MON2Q7Z3U7 1717 aa20.1■□□□□ 0.81
UPF3A-204ENST00000475218 CCDC125Q86Z20 511 aa20.09■□□□□ 0.81
UPF3A-204ENST00000475218 STRN4Q9NRL3 753 aa20.09■□□□□ 0.81
UPF3A-204ENST00000475218 COL18A1P39060 1754 aa20.08■□□□□ 0.81
UPF3A-204ENST00000475218 TTC21BQ7Z4L5 1316 aa20.08■□□□□ 0.8
UPF3A-204ENST00000475218 NLRP6P59044 892 aa20.08■□□□□ 0.8
UPF3A-204ENST00000475218 LARP1Q6PKG0 1096 aaKnown RBP20.06■□□□□ 0.8
UPF3A-204ENST00000475218 COL5A2P05997 1499 aaPredicted RBP20.06■□□□□ 0.8
UPF3A-204ENST00000475218 FAM182BQ5T319 152 aa20.06■□□□□ 0.8
UPF3A-204ENST00000475218 TESK2Q96S53 571 aa20.06■□□□□ 0.8
UPF3A-204ENST00000475218 ZNF692Q9BU19 519 aaPredicted RBP20.06■□□□□ 0.8
UPF3A-204ENST00000475218 A0A0G2JS52 829 aa20.05■□□□□ 0.8
UPF3A-204ENST00000475218 MYT1Q01538 1121 aa20.05■□□□□ 0.8
UPF3A-204ENST00000475218 DEFB132Q7Z7B7 95 aa20.04■□□□□ 0.8
UPF3A-204ENST00000475218 KTN1Q86UP2 1357 aaKnown RBP20.04■□□□□ 0.8
UPF3A-204ENST00000475218 AATKQ6ZMQ8 1374 aa20.03■□□□□ 0.8
UPF3A-204ENST00000475218 NFAT5O94916 1531 aa20.03■□□□□ 0.8
UPF3A-204ENST00000475218 ZRANB1Q9UGI0 708 aa20.02■□□□□ 0.8
UPF3A-204ENST00000475218 TTC21AQ8NDW8 1320 aa20.02■□□□□ 0.79
UPF3A-204ENST00000475218 ST20-MTHFSA0A0A6YYL1 179 aa20.01■□□□□ 0.79
UPF3A-204ENST00000475218 SLC12A5Q9H2X9 1139 aa20.01■□□□□ 0.79
UPF3A-204ENST00000475218 USP35Q9P2H5 1018 aa20.01■□□□□ 0.79
UPF3A-204ENST00000475218 USP54Q70EL1 1684 aa20.01■□□□□ 0.79
UPF3A-204ENST00000475218 EVA1CP58658 441 aa20■□□□□ 0.79
UPF3A-204ENST00000475218 BARGINQ6ZT62 677 aa20■□□□□ 0.79
UPF3A-204ENST00000475218 AXIN2Q9Y2T1 843 aa20■□□□□ 0.79
UPF3A-204ENST00000475218 TNS1Q9HBL0 1735 aaKnown RBP19.99■□□□□ 0.79
UPF3A-204ENST00000475218 RGPD5Q99666 1765 aa19.99■□□□□ 0.79
UPF3A-204ENST00000475218 ARHGEF25Q86VW2 580 aa19.99■□□□□ 0.79
UPF3A-204ENST00000475218 USP31Q70CQ4 1352 aa19.98■□□□□ 0.79
UPF3A-204ENST00000475218 PUS7Q96PZ0 661 aaKnown RBP19.98■□□□□ 0.79
UPF3A-204ENST00000475218 ZBTB7CA1YPR0 619 aa19.97■□□□□ 0.79
UPF3A-204ENST00000475218 TCP11L2Q8N4U5 519 aa19.97■□□□□ 0.79
UPF3A-204ENST00000475218 A0A1W2PP64 1363 aa19.97■□□□□ 0.79
UPF3A-204ENST00000475218 CRB1P82279 1406 aa19.97■□□□□ 0.79
UPF3A-204ENST00000475218 RGPD1P0DJD0 1748 aa19.97■□□□□ 0.79
UPF3A-204ENST00000475218 PARP4Q9UKK3 1724 aaKnown RBP19.97■□□□□ 0.79
UPF3A-204ENST00000475218 NME9Q86XW9 330 aa19.96■□□□□ 0.79
UPF3A-204ENST00000475218 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.96■□□□□ 0.79
UPF3A-204ENST00000475218 TMC1Q8TDI8 760 aa19.95■□□□□ 0.78
UPF3A-204ENST00000475218 SOX12O15370 315 aa19.95■□□□□ 0.78
UPF3A-204ENST00000475218 EDC4Q6P2E9 1401 aaKnown RBP19.94■□□□□ 0.78
UPF3A-204ENST00000475218 KCNH5Q8NCM2 988 aa19.94■□□□□ 0.78
UPF3A-204ENST00000475218 USP47Q96K76 1375 aa19.94■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms