RNA–Protein interactions for RNA: ENST00000472585.1

VCL-204, Transcript of vinculin, humanhuman

TSL 2

Gene VCL, Length 556 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-204ENST00000472585 ABCA3Q99758 1704 aa13.93□□□□□ -0.18
VCL-204ENST00000472585 IFT172Q9UG01 1749 aa13.93□□□□□ -0.18
VCL-204ENST00000472585 SBNO1A3KN83 1393 aa13.93□□□□□ -0.18
VCL-204ENST00000472585 ARHGEF10O15013 1369 aa13.93□□□□□ -0.18
VCL-204ENST00000472585 NRXN1Q9ULB1 1477 aa13.93□□□□□ -0.18
VCL-204ENST00000472585 FAM182BQ5T319 152 aa13.92□□□□□ -0.18
VCL-204ENST00000472585 BTG4Q9NY30 223 aa13.92□□□□□ -0.18
VCL-204ENST00000472585 KNDC1Q76NI1 1749 aa13.92□□□□□ -0.18
VCL-204ENST00000472585 PRR36Q9H6K5 1346 aa13.91□□□□□ -0.18
VCL-204ENST00000472585 EZH2Q15910 746 aaKnown RBP13.91□□□□□ -0.18
VCL-204ENST00000472585 HIRIP3Q9BW71 556 aaPredicted RBP13.9□□□□□ -0.18
VCL-204ENST00000472585 DHX57Q6P158 1386 aaKnown RBP13.9□□□□□ -0.18
VCL-204ENST00000472585 NRAPQ86VF7 1730 aa13.9□□□□□ -0.18
VCL-204ENST00000472585 TNS1Q9HBL0 1735 aaKnown RBP13.9□□□□□ -0.18
VCL-204ENST00000472585 DISP2A7MBM2 1401 aa13.9□□□□□ -0.19
VCL-204ENST00000472585 ADGRB2O60241 1585 aa13.89□□□□□ -0.19
VCL-204ENST00000472585 PPP1R1BQ9UD71 204 aaPredicted RBP13.88□□□□□ -0.19
VCL-204ENST00000472585 COL14A1Q05707 1796 aaKnown RBP13.88□□□□□ -0.19
VCL-204ENST00000472585 TRIM37O94972 964 aa13.87□□□□□ -0.19
VCL-204ENST00000472585 MYCNP04198 464 aaPredicted RBP13.87□□□□□ -0.19
VCL-204ENST00000472585 TRAK1Q9UPV9 953 aa13.87□□□□□ -0.19
VCL-204ENST00000472585 APBA3O96018 575 aa13.86□□□□□ -0.19
VCL-204ENST00000472585 NBPF8Q3BBV2 869 aa13.86□□□□□ -0.19
VCL-204ENST00000472585 NBPF14Q5TI25 921 aa13.86□□□□□ -0.19
VCL-204ENST00000472585 FAM196AQ6ZSG2 479 aa13.86□□□□□ -0.19
VCL-204ENST00000472585 CAMKK2Q96RR4 588 aa13.86□□□□□ -0.19
VCL-204ENST00000472585 POGKQ9P215 609 aa13.86□□□□□ -0.19
VCL-204ENST00000472585 SPATA31A5Q5VU36 1347 aa13.86□□□□□ -0.19
VCL-204ENST00000472585 SPATA31A7Q8IWB4 1347 aa13.86□□□□□ -0.19
VCL-204ENST00000472585 MINK1Q8N4C8 1332 aaPredicted RBP13.85□□□□□ -0.19
VCL-204ENST00000472585 ACIN1Q9UKV3 1341 aaKnown RBP13.85□□□□□ -0.19
VCL-204ENST00000472585 PARD3Q8TEW0 1356 aa13.84□□□□□ -0.19
VCL-204ENST00000472585 ADGRB1O14514 1584 aa13.84□□□□□ -0.19
VCL-204ENST00000472585 ANKARQ7Z5J8 1434 aa13.84□□□□□ -0.19
VCL-204ENST00000472585 THSD7AQ9UPZ6 1657 aa13.83□□□□□ -0.2
VCL-204ENST00000472585 WASLO00401 505 aaPredicted RBP13.83□□□□□ -0.2
VCL-204ENST00000472585 SPON1Q9HCB6 807 aa13.83□□□□□ -0.2
VCL-204ENST00000472585 DLC1Q96QB1 1528 aa13.83□□□□□ -0.2
VCL-204ENST00000472585 GPRASP1Q5JY77 1395 aa13.83□□□□□ -0.2
VCL-204ENST00000472585 TRPM3Q9HCF6 1732 aaPredicted RBP13.82□□□□□ -0.2
VCL-204ENST00000472585 ZBTB22O15209 634 aa13.82□□□□□ -0.2
VCL-204ENST00000472585 PRDM11Q9NQV5 511 aa13.81□□□□□ -0.2
VCL-204ENST00000472585 KDM2AQ9Y2K7 1162 aa13.81□□□□□ -0.2
VCL-204ENST00000472585 RREB1Q92766 1687 aa13.8□□□□□ -0.2
VCL-204ENST00000472585 PDE3BQ13370 1112 aa13.8□□□□□ -0.2
VCL-204ENST00000472585 CHRNA2Q15822 529 aa13.8□□□□□ -0.2
VCL-204ENST00000472585 SAMD1Q6SPF0 538 aaPredicted RBP13.8□□□□□ -0.2
VCL-204ENST00000472585 ALS2Q96Q42 1657 aa13.79□□□□□ -0.2
VCL-204ENST00000472585 NUP188Q5SRE5 1749 aa13.79□□□□□ -0.2
VCL-204ENST00000472585 KCNQ2O43526 872 aa13.79□□□□□ -0.2
VCL-204ENST00000472585 SPATA31A1Q5TZJ5 1347 aa13.79□□□□□ -0.2
VCL-204ENST00000472585 NINLQ9Y2I6 1382 aa13.79□□□□□ -0.2
VCL-204ENST00000472585 PAK3O75914 559 aaPredicted RBP13.78□□□□□ -0.2
VCL-204ENST00000472585 NUTM2GQ5VZR2 741 aa13.78□□□□□ -0.2
VCL-204ENST00000472585 NGDNQ8NEJ9 315 aaKnown RBP13.78□□□□□ -0.2
VCL-204ENST00000472585 DCAF11Q8TEB1 546 aa13.78□□□□□ -0.2
VCL-204ENST00000472585 STRN4Q9NRL3 753 aa13.78□□□□□ -0.2
VCL-204ENST00000472585 KIAA0232Q92628 1395 aa13.77□□□□□ -0.21
VCL-204ENST00000472585 NUDT16Q96DE0 195 aaKnown RBP13.77□□□□□ -0.21
VCL-204ENST00000472585 RAB3GAP2Q9H2M9 1393 aa13.77□□□□□ -0.21
VCL-204ENST00000472585 USP35Q9P2H5 1018 aa13.77□□□□□ -0.21
VCL-204ENST00000472585 TULP4Q9NRJ4 1543 aa13.76□□□□□ -0.21
VCL-204ENST00000472585 EVA1CP58658 441 aa13.76□□□□□ -0.21
VCL-204ENST00000472585 ZC3H6P61129 1189 aaKnown RBP13.76□□□□□ -0.21
VCL-204ENST00000472585 CRYBG1Q9Y4K1 1723 aa13.76□□□□□ -0.21
VCL-204ENST00000472585 EIF3AQ14152 1382 aaKnown RBP13.74□□□□□ -0.21
VCL-204ENST00000472585 SENP3-EIF4A1A0A087X0R7 540 aa13.74□□□□□ -0.21
VCL-204ENST00000472585 CAPN15O75808 1086 aa13.74□□□□□ -0.21
VCL-204ENST00000472585 CDK19Q9BWU1 502 aa13.74□□□□□ -0.21
VCL-204ENST00000472585 CAMTA1Q9Y6Y1 1673 aa13.74□□□□□ -0.21
VCL-204ENST00000472585 ATP7BP35670 1465 aa13.73□□□□□ -0.21
VCL-204ENST00000472585 ACEP12821 1306 aa13.72□□□□□ -0.21
VCL-204ENST00000472585 LARP1Q6PKG0 1096 aaKnown RBP13.72□□□□□ -0.21
VCL-204ENST00000472585 BARGINQ6ZT62 677 aa13.72□□□□□ -0.21
VCL-204ENST00000472585 ZNF784Q8NCA9 323 aaPredicted RBP13.72□□□□□ -0.21
VCL-204ENST00000472585 SPINK5Q9NQ38 1064 aaPredicted RBP13.72□□□□□ -0.21
VCL-204ENST00000472585 PLEKHG3A1L390 1219 aa13.7□□□□□ -0.22
VCL-204ENST00000472585 C11orf95C9JLR9 678 aaPredicted RBP13.7□□□□□ -0.22
VCL-204ENST00000472585 CHD4Q14839 1912 aa13.7□□□□□ -0.22
VCL-204ENST00000472585 POLR3AO14802 1390 aaPredicted RBP13.7□□□□□ -0.22
VCL-204ENST00000472585 PHRF1Q9P1Y6 1649 aaKnown RBP13.69□□□□□ -0.22
VCL-204ENST00000472585 NBPF1Q3BBV0 1214 aa13.69□□□□□ -0.22
VCL-204ENST00000472585 TCP11L2Q8N4U5 519 aa13.69□□□□□ -0.22
VCL-204ENST00000472585 CCDC61Q9Y6R9 512 aa13.69□□□□□ -0.22
VCL-204ENST00000472585 SSH2Q76I76 1423 aa13.68□□□□□ -0.22
VCL-204ENST00000472585 ITSN1Q15811 1721 aa13.67□□□□□ -0.22
VCL-204ENST00000472585 IFFO2Q5TF58 517 aa13.67□□□□□ -0.22
VCL-204ENST00000472585 ABTB2Q8N961 1025 aa13.67□□□□□ -0.22
VCL-204ENST00000472585 STAC3Q96MF2 364 aa13.67□□□□□ -0.22
VCL-204ENST00000472585 NRKQ7Z2Y5 1582 aa13.66□□□□□ -0.22
VCL-204ENST00000472585 USP19O94966 1318 aa13.66□□□□□ -0.22
VCL-204ENST00000472585 C1QTNF8P60827 252 aa13.66□□□□□ -0.22
VCL-204ENST00000472585 PTF1AQ7RTS3 328 aa13.66□□□□□ -0.22
VCL-204ENST00000472585 THRAP3Q9Y2W1 955 aaKnown RBP13.66□□□□□ -0.22
VCL-204ENST00000472585 PLSCR1O15162 318 aa13.65□□□□□ -0.22
VCL-204ENST00000472585 GCP02774 474 aa13.65□□□□□ -0.22
VCL-204ENST00000472585 BCL11BQ9C0K0 894 aaPredicted RBP13.65□□□□□ -0.22
VCL-204ENST00000472585 CPDO75976 1380 aa13.65□□□□□ -0.22
VCL-204ENST00000472585 RGPD3A6NKT7 1758 aaPredicted RBP13.65□□□□□ -0.22
VCL-204ENST00000472585 RGPD4Q7Z3J3 1758 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 100.8 ms