RNA–Protein interactions for RNA: ENST00000472119.1

SCN9A-206, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 2

Gene SCN9A, Length 905 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-206ENST00000472119 PCDHGC3Q9UN70 934 aa12.89□□□□□ -0.35
SCN9A-206ENST00000472119 KCNMA1Q12791 1236 aa12.88□□□□□ -0.35
SCN9A-206ENST00000472119 FAM217BQ9NTX9 383 aaPredicted RBP12.88□□□□□ -0.35
SCN9A-206ENST00000472119 EVA1BQ9NVM1 165 aa12.88□□□□□ -0.35
SCN9A-206ENST00000472119 MAN1A2O60476 641 aa12.86□□□□□ -0.35
SCN9A-206ENST00000472119 CLCN1P35523 988 aa12.86□□□□□ -0.35
SCN9A-206ENST00000472119 KCNH2Q12809 1159 aa12.86□□□□□ -0.35
SCN9A-206ENST00000472119 MPNDQ8N594 471 aa12.85□□□□□ -0.35
SCN9A-206ENST00000472119 CCDC102AQ96A19 550 aa12.85□□□□□ -0.35
SCN9A-206ENST00000472119 MINK1Q8N4C8 1332 aaPredicted RBP12.85□□□□□ -0.35
SCN9A-206ENST00000472119 SCRIBQ14160 1630 aa12.84□□□□□ -0.35
SCN9A-206ENST00000472119 C6orf118Q5T5N4 469 aa12.84□□□□□ -0.35
SCN9A-206ENST00000472119 KRI1Q8N9T8 703 aaKnown RBP12.83□□□□□ -0.36
SCN9A-206ENST00000472119 GSK3AP49840 483 aa12.82□□□□□ -0.36
SCN9A-206ENST00000472119 UNC13AQ9UPW8 1703 aa12.82□□□□□ -0.36
SCN9A-206ENST00000472119 ARID5BQ14865 1188 aa12.81□□□□□ -0.36
SCN9A-206ENST00000472119 KLF16Q9BXK1 252 aaPredicted RBP12.81□□□□□ -0.36
SCN9A-206ENST00000472119 PPFIA3O75145 1194 aa12.8□□□□□ -0.36
SCN9A-206ENST00000472119 ZIC2O95409 532 aaPredicted RBP12.8□□□□□ -0.36
SCN9A-206ENST00000472119 TMEM151AQ8N4L1 468 aa12.8□□□□□ -0.36
SCN9A-206ENST00000472119 PRR7Q8TB68 274 aa12.8□□□□□ -0.36
SCN9A-206ENST00000472119 FAM174AQ8TBP5 190 aa12.8□□□□□ -0.36
SCN9A-206ENST00000472119 ZFAND3Q9H8U3 227 aa12.8□□□□□ -0.36
SCN9A-206ENST00000472119 GDF11O95390 407 aa12.77□□□□□ -0.37
SCN9A-206ENST00000472119 NDUFV2P19404 249 aa12.77□□□□□ -0.37
SCN9A-206ENST00000472119 BICRAQ9NZM4 1560 aa12.77□□□□□ -0.37
SCN9A-206ENST00000472119 BMP2P12643 396 aa12.76□□□□□ -0.37
SCN9A-206ENST00000472119 CTHP32929 405 aa12.76□□□□□ -0.37
SCN9A-206ENST00000472119 ITPKCQ96DU7 683 aa12.76□□□□□ -0.37
SCN9A-206ENST00000472119 RASSF7Q02833 373 aa12.75□□□□□ -0.37
SCN9A-206ENST00000472119 SPIRE2Q8WWL2 714 aa12.75□□□□□ -0.37
SCN9A-206ENST00000472119 UPP2O95045 317 aa12.74□□□□□ -0.37
SCN9A-206ENST00000472119 MOXD2PA6NHM9 499 aa12.73□□□□□ -0.37
SCN9A-206ENST00000472119 MTMR2Q13614 643 aa12.73□□□□□ -0.37
SCN9A-206ENST00000472119 FOXJ1Q92949 421 aa12.73□□□□□ -0.37
SCN9A-206ENST00000472119 SHROOM4Q9ULL8 1493 aa12.72□□□□□ -0.37
SCN9A-206ENST00000472119 RNF225M0QZC1 329 aaPredicted RBP12.72□□□□□ -0.37
SCN9A-206ENST00000472119 CDK15Q96Q40 435 aa12.72□□□□□ -0.37
SCN9A-206ENST00000472119 TULP1O00294 542 aaPredicted RBP12.71□□□□□ -0.37
SCN9A-206ENST00000472119 NR3C2P08235 984 aa12.71□□□□□ -0.37
SCN9A-206ENST00000472119 DESI1Q6ICB0 168 aa12.71□□□□□ -0.37
SCN9A-206ENST00000472119 LINC00528Q8N1L1 170 aa12.71□□□□□ -0.37
SCN9A-206ENST00000472119 CNTNAP3BQ96NU0 1288 aa12.71□□□□□ -0.37
SCN9A-206ENST00000472119 CNTNAP3Q9BZ76 1288 aa12.71□□□□□ -0.37
SCN9A-206ENST00000472119 NR5A1Q13285 461 aa12.7□□□□□ -0.38
SCN9A-206ENST00000472119 ADAMTS8Q9UP79 889 aa12.7□□□□□ -0.38
SCN9A-206ENST00000472119 SPDYE5A6NIY4 337 aa12.69□□□□□ -0.38
SCN9A-206ENST00000472119 SSTR3P32745 418 aaPredicted RBP12.69□□□□□ -0.38
SCN9A-206ENST00000472119 KRT76Q01546 638 aa12.69□□□□□ -0.38
SCN9A-206ENST00000472119 DNMT3LQ9UJW3 386 aa12.69□□□□□ -0.38
SCN9A-206ENST00000472119 AGERQ15109 404 aa12.68□□□□□ -0.38
SCN9A-206ENST00000472119 GPR161Q8N6U8 529 aaKnown RBP12.67□□□□□ -0.38
SCN9A-206ENST00000472119 SOS2Q07890 1332 aaPredicted RBP12.66□□□□□ -0.38
SCN9A-206ENST00000472119 MEIOBQ8N635 442 aa12.66□□□□□ -0.38
SCN9A-206ENST00000472119 LYPD8Q6UX82 237 aa12.65□□□□□ -0.38
SCN9A-206ENST00000472119 MAP10Q9P2G4 905 aa12.65□□□□□ -0.38
SCN9A-206ENST00000472119 SPTLC1O15269 473 aa12.63□□□□□ -0.39
SCN9A-206ENST00000472119 GRM5P41594 1212 aa12.63□□□□□ -0.39
SCN9A-206ENST00000472119 SVOPQ8N4V2 548 aa12.62□□□□□ -0.39
SCN9A-206ENST00000472119 C4orf48Q5BLP8 95 aa12.61□□□□□ -0.39
SCN9A-206ENST00000472119 COL25A1Q9BXS0 654 aaPredicted RBP12.61□□□□□ -0.39
SCN9A-206ENST00000472119 ZNF800Q2TB10 664 aaPredicted RBP eCLIP12.6□□□□□ -0.399e-10■■■■□ 21.2
SCN9A-206ENST00000472119 GPAT2Q6NUI2 795 aa12.6□□□□□ -0.39
SCN9A-206ENST00000472119 TTLL12Q14166 644 aaPredicted RBP12.59□□□□□ -0.39
SCN9A-206ENST00000472119 BPHLQ86WA6 291 aaPredicted RBP12.59□□□□□ -0.39
SCN9A-206ENST00000472119 CFAP99D6REC4 459 aa12.58□□□□□ -0.4
SCN9A-206ENST00000472119 F12P00748 615 aaPredicted RBP12.58□□□□□ -0.4
SCN9A-206ENST00000472119 FSHRP23945 695 aa12.58□□□□□ -0.4
SCN9A-206ENST00000472119 PLCB2Q00722 1185 aa12.58□□□□□ -0.4
SCN9A-206ENST00000472119 PTSQ03393 145 aa12.58□□□□□ -0.4
SCN9A-206ENST00000472119 ZNF385CQ66K41 422 aaPredicted RBP12.58□□□□□ -0.4
SCN9A-206ENST00000472119 TSEN34Q9BSV6 310 aaKnown RBP12.58□□□□□ -0.4
SCN9A-206ENST00000472119 IRS1P35568 1242 aa12.57□□□□□ -0.4
SCN9A-206ENST00000472119 FIGNL2A6NMB9 653 aa12.56□□□□□ -0.4
SCN9A-206ENST00000472119 TTLL8A6PVC2 850 aa12.56□□□□□ -0.4
SCN9A-206ENST00000472119 DNMT3AQ9Y6K1 912 aaPredicted RBP12.55□□□□□ -0.4
SCN9A-206ENST00000472119 RNFT1Q5M7Z0 435 aa12.54□□□□□ -0.4
SCN9A-206ENST00000472119 PCDHB15Q9Y5E8 787 aa12.54□□□□□ -0.4
SCN9A-206ENST00000472119 RSBN1LQ6PCB5 846 aaPredicted RBP12.53□□□□□ -0.4
SCN9A-206ENST00000472119 BEGAINQ9BUH8 593 aa12.53□□□□□ -0.4
SCN9A-206ENST00000472119 VASH1Q7L8A9 365 aaPredicted RBP12.52□□□□□ -0.41
SCN9A-206ENST00000472119 CCDC155Q8N6L0 562 aa12.52□□□□□ -0.41
SCN9A-206ENST00000472119 WHAMMQ8TF30 809 aa12.52□□□□□ -0.41
SCN9A-206ENST00000472119 TBC1D2Q9BYX2 928 aa12.52□□□□□ -0.41
SCN9A-206ENST00000472119 HRCP23327 699 aa12.51□□□□□ -0.41
SCN9A-206ENST00000472119 NANOS1Q8WY41 292 aaKnown RBP12.51□□□□□ -0.41
SCN9A-206ENST00000472119 ZBTB3Q9H5J0 574 aa12.51□□□□□ -0.41
SCN9A-206ENST00000472119 EMILIN1Q9Y6C2 1016 aa12.51□□□□□ -0.41
SCN9A-206ENST00000472119 IGHA1P01876 353 aa12.5□□□□□ -0.41
SCN9A-206ENST00000472119 GJA5P36382 358 aa12.5□□□□□ -0.41
SCN9A-206ENST00000472119 MARSP56192 900 aaKnown RBP12.5□□□□□ -0.41
SCN9A-206ENST00000472119 GIGYF2Q6Y7W6 1299 aaKnown RBP12.5□□□□□ -0.41
SCN9A-206ENST00000472119 PER1O15534 1290 aaPredicted RBP12.49□□□□□ -0.41
SCN9A-206ENST00000472119 CCDC116Q8IYX3 515 aa12.49□□□□□ -0.41
SCN9A-206ENST00000472119 TSC1Q92574 1164 aa12.49□□□□□ -0.41
SCN9A-206ENST00000472119 CDC14CA4D256 554 aa12.48□□□□□ -0.41
SCN9A-206ENST00000472119 C1QTNF2Q9BXJ5 285 aa12.48□□□□□ -0.41
SCN9A-206ENST00000472119 MAP4K5Q9Y4K4 846 aa12.48□□□□□ -0.41
SCN9A-206ENST00000472119 MAGEB6P1A0A0J9YX57 407 aa12.47□□□□□ -0.41
SCN9A-206ENST00000472119 VWA5B2Q8N398 1253 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms