RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 ARHGEF10O15013 1369 aa16.62■□□□□ 0.25
VPS13D-204ENST00000469054 BRD4O60885 1362 aaPredicted RBP16.62■□□□□ 0.25
VPS13D-204ENST00000469054 USP6P35125 1406 aa16.62■□□□□ 0.25
VPS13D-204ENST00000469054 NUTM2BA6NNL0 878 aaPredicted RBP16.61■□□□□ 0.25
VPS13D-204ENST00000469054 NUTM2EB1AL46 878 aaPredicted RBP16.61■□□□□ 0.25
VPS13D-204ENST00000469054 NUTM2AQ8IVF1 878 aaPredicted RBP16.61■□□□□ 0.25
VPS13D-204ENST00000469054 KTN1Q86UP2 1357 aaKnown RBP16.6■□□□□ 0.25
VPS13D-204ENST00000469054 SSH2Q76I76 1423 aa16.6■□□□□ 0.25
VPS13D-204ENST00000469054 CD163L1Q9NR16 1453 aa16.6■□□□□ 0.25
VPS13D-204ENST00000469054 ABTB2Q8N961 1025 aa16.59■□□□□ 0.25
VPS13D-204ENST00000469054 TTC21BQ7Z4L5 1316 aa16.59■□□□□ 0.25
VPS13D-204ENST00000469054 A0A1W2PP64 1363 aa16.58■□□□□ 0.24
VPS13D-204ENST00000469054 SHPRHQ149N8 1683 aa16.57■□□□□ 0.24
VPS13D-204ENST00000469054 ANKRD36BQ8N2N9 1353 aa16.57■□□□□ 0.24
VPS13D-204ENST00000469054 NUTM2GQ5VZR2 741 aa16.57■□□□□ 0.24
VPS13D-204ENST00000469054 KIF7Q2M1P5 1343 aa16.56■□□□□ 0.24
VPS13D-204ENST00000469054 TTC21AQ8NDW8 1320 aa16.56■□□□□ 0.24
VPS13D-204ENST00000469054 PLEKHG5O94827 1062 aa16.56■□□□□ 0.24
VPS13D-204ENST00000469054 CABLES1Q8TDN4 633 aa16.56■□□□□ 0.24
VPS13D-204ENST00000469054 TRPM3Q9HCF6 1732 aaPredicted RBP16.56■□□□□ 0.24
VPS13D-204ENST00000469054 NLRP13Q86W25 1043 aa16.55■□□□□ 0.24
VPS13D-204ENST00000469054 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.55■□□□□ 0.24
VPS13D-204ENST00000469054 LRP6O75581 1613 aa16.55■□□□□ 0.24
VPS13D-204ENST00000469054 ADAMTS2O95450 1211 aa16.54■□□□□ 0.24
VPS13D-204ENST00000469054 HAP1P54257 671 aaPredicted RBP16.54■□□□□ 0.24
VPS13D-204ENST00000469054 MEX3CQ5U5Q3 659 aaKnown RBP16.54■□□□□ 0.24
VPS13D-204ENST00000469054 EDC4Q6P2E9 1401 aaKnown RBP16.53■□□□□ 0.24
VPS13D-204ENST00000469054 NLRP6P59044 892 aa16.53■□□□□ 0.24
VPS13D-204ENST00000469054 COL22A1Q8NFW1 1626 aaPredicted RBP16.52■□□□□ 0.24
VPS13D-204ENST00000469054 MED1Q15648 1581 aaPredicted RBP16.51■□□□□ 0.23
VPS13D-204ENST00000469054 ALS2Q96Q42 1657 aa16.51■□□□□ 0.23
VPS13D-204ENST00000469054 NME9Q86XW9 330 aa16.51■□□□□ 0.23
VPS13D-204ENST00000469054 CARD14Q9BXL6 1004 aa16.51■□□□□ 0.23
VPS13D-204ENST00000469054 PANK3Q9H999 370 aa16.51■□□□□ 0.23
VPS13D-204ENST00000469054 CCDC7Q96M83 1385 aa16.51■□□□□ 0.23
VPS13D-204ENST00000469054 USP19O94966 1318 aa16.5■□□□□ 0.23
VPS13D-204ENST00000469054 WASHC2AQ641Q2 1341 aa16.5■□□□□ 0.23
VPS13D-204ENST00000469054 C8orf37Q96NL8 207 aa16.5■□□□□ 0.23
VPS13D-204ENST00000469054 AKAP12Q02952 1782 aa16.49■□□□□ 0.23
VPS13D-204ENST00000469054 GCP02774 474 aa16.49■□□□□ 0.23
VPS13D-204ENST00000469054 ZRANB1Q9UGI0 708 aa16.49■□□□□ 0.23
VPS13D-204ENST00000469054 USP31Q70CQ4 1352 aa16.49■□□□□ 0.23
VPS13D-204ENST00000469054 NGLY1Q96IV0 654 aa16.48■□□□□ 0.23
VPS13D-204ENST00000469054 MON2Q7Z3U7 1717 aa16.47■□□□□ 0.23
VPS13D-204ENST00000469054 NRKQ7Z2Y5 1582 aa16.47■□□□□ 0.23
VPS13D-204ENST00000469054 NSD3Q9BZ95 1437 aa16.46■□□□□ 0.23
VPS13D-204ENST00000469054 FAM83GA6ND36 823 aa16.46■□□□□ 0.23
VPS13D-204ENST00000469054 FYB1O15117 783 aa16.46■□□□□ 0.23
VPS13D-204ENST00000469054 FNBP4Q8N3X1 1017 aaPredicted RBP16.46■□□□□ 0.23
VPS13D-204ENST00000469054 KCNH5Q8NCM2 988 aa16.46■□□□□ 0.23
VPS13D-204ENST00000469054 RGS17Q9UGC6 210 aaPredicted RBP16.46■□□□□ 0.23
VPS13D-204ENST00000469054 MYOM1P52179 1685 aa16.46■□□□□ 0.23
VPS13D-204ENST00000469054 ZC3H6P61129 1189 aaKnown RBP16.45■□□□□ 0.22
VPS13D-204ENST00000469054 AFF2P51816 1311 aa16.45■□□□□ 0.22
VPS13D-204ENST00000469054 ZNF772Q68DY9 489 aaPredicted RBP16.44■□□□□ 0.22
VPS13D-204ENST00000469054 COG3Q96JB2 828 aa16.44■□□□□ 0.22
VPS13D-204ENST00000469054 PRDM11Q9NQV5 511 aa16.44■□□□□ 0.22
VPS13D-204ENST00000469054 CGNL1Q0VF96 1302 aa16.44■□□□□ 0.22
VPS13D-204ENST00000469054 PIK3C2AO00443 1686 aa16.43■□□□□ 0.22
VPS13D-204ENST00000469054 KIAA0232Q92628 1395 aa16.43■□□□□ 0.22
VPS13D-204ENST00000469054 GGNBP2Q9H3C7 697 aa16.43■□□□□ 0.22
VPS13D-204ENST00000469054 CPDO75976 1380 aa16.42■□□□□ 0.22
VPS13D-204ENST00000469054 SLIT3O75094 1523 aa16.42■□□□□ 0.22
VPS13D-204ENST00000469054 SOX12O15370 315 aa16.42■□□□□ 0.22
VPS13D-204ENST00000469054 USP21Q9UK80 565 aa16.42■□□□□ 0.22
VPS13D-204ENST00000469054 KNSTRNQ9Y448 316 aa16.42■□□□□ 0.22
VPS13D-204ENST00000469054 OVOS2A0A0J9YW53 1432 aa16.42■□□□□ 0.22
VPS13D-204ENST00000469054 OVOS2Q6IE36 1432 aa16.42■□□□□ 0.22
VPS13D-204ENST00000469054 CHRNA2Q15822 529 aa16.41■□□□□ 0.22
VPS13D-204ENST00000469054 PER1O15534 1290 aaPredicted RBP16.4■□□□□ 0.22
VPS13D-204ENST00000469054 ARHGEF25Q86VW2 580 aa16.4■□□□□ 0.22
VPS13D-204ENST00000469054 UNC5CLQ8IV45 518 aa16.4■□□□□ 0.22
VPS13D-204ENST00000469054 SLIT2O94813 1529 aa16.4■□□□□ 0.22
VPS13D-204ENST00000469054 BTG4Q9NY30 223 aa16.39■□□□□ 0.21
VPS13D-204ENST00000469054 ABCA3Q99758 1704 aa16.39■□□□□ 0.21
VPS13D-204ENST00000469054 CRYBG1Q9Y4K1 1723 aa16.39■□□□□ 0.21
VPS13D-204ENST00000469054 BCL9LQ86UU0 1499 aa16.38■□□□□ 0.21
VPS13D-204ENST00000469054 ZBTB7CA1YPR0 619 aa16.38■□□□□ 0.21
VPS13D-204ENST00000469054 POTEAQ6S8J7 498 aa16.38■□□□□ 0.21
VPS13D-204ENST00000469054 QTRT2Q9H974 415 aaKnown RBP16.38■□□□□ 0.21
VPS13D-204ENST00000469054 PHRF1Q9P1Y6 1649 aaKnown RBP16.37■□□□□ 0.21
VPS13D-204ENST00000469054 FBLN1P23142 703 aa16.36■□□□□ 0.21
VPS13D-204ENST00000469054 AMER1Q5JTC6 1135 aaPredicted RBP16.36■□□□□ 0.21
VPS13D-204ENST00000469054 TRPC5Q9UL62 973 aaPredicted RBP16.36■□□□□ 0.21
VPS13D-204ENST00000469054 AATKQ6ZMQ8 1374 aa16.36■□□□□ 0.21
VPS13D-204ENST00000469054 NFAT5O94916 1531 aa16.35■□□□□ 0.21
VPS13D-204ENST00000469054 NSD2O96028 1365 aa16.35■□□□□ 0.21
VPS13D-204ENST00000469054 USP54Q70EL1 1684 aa16.34■□□□□ 0.21
VPS13D-204ENST00000469054 MARF1Q9Y4F3 1742 aaKnown RBP16.34■□□□□ 0.21
VPS13D-204ENST00000469054 EVA1CP58658 441 aa16.34■□□□□ 0.21
VPS13D-204ENST00000469054 AXIN2Q9Y2T1 843 aa16.34■□□□□ 0.21
VPS13D-204ENST00000469054 RRS1Q15050 365 aaKnown RBP16.33■□□□□ 0.2
VPS13D-204ENST00000469054 VPS72Q15906 364 aa16.33■□□□□ 0.2
VPS13D-204ENST00000469054 ATRNO75882 1429 aa16.33■□□□□ 0.2
VPS13D-204ENST00000469054 COL14A1Q05707 1796 aaKnown RBP16.33■□□□□ 0.2
VPS13D-204ENST00000469054 RXRBP28702 533 aa16.32■□□□□ 0.2
VPS13D-204ENST00000469054 RBM6P78332 1123 aaKnown RBP16.32■□□□□ 0.2
VPS13D-204ENST00000469054 MAP3K19Q56UN5 1328 aa16.32■□□□□ 0.2
VPS13D-204ENST00000469054 MORC1Q86VD1 984 aa16.32■□□□□ 0.2
VPS13D-204ENST00000469054 POTEDQ86YR6 584 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms