RNA–Protein interactions for RNA: ENST00000466532.1

COL9A3-206, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 539 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-206ENST00000466532 PHRF1Q9P1Y6 1649 aaKnown RBP27.77■■■□□ 2.04
COL9A3-206ENST00000466532 CCDC125Q86Z20 511 aa27.76■■■□□ 2.03
COL9A3-206ENST00000466532 CDK19Q9BWU1 502 aa27.76■■■□□ 2.03
COL9A3-206ENST00000466532 NBPF1Q3BBV0 1214 aa27.75■■■□□ 2.03
COL9A3-206ENST00000466532 SEPT12Q8IYM1 358 aa27.74■■■□□ 2.03
COL9A3-206ENST00000466532 QRICH2Q9H0J4 1663 aa27.74■■■□□ 2.03
COL9A3-206ENST00000466532 BTG4Q9NY30 223 aa27.72■■■□□ 2.03
COL9A3-206ENST00000466532 ONECUT3O60422 494 aaPredicted RBP27.69■■■□□ 2.02
COL9A3-206ENST00000466532 BLMP54132 1417 aaPredicted RBP27.68■■■□□ 2.02
COL9A3-206ENST00000466532 CCDC61Q9Y6R9 512 aa27.68■■■□□ 2.02
COL9A3-206ENST00000466532 POLR3AO14802 1390 aaPredicted RBP27.68■■■□□ 2.02
COL9A3-206ENST00000466532 TRPM1Q7Z4N2 1603 aa27.67■■■□□ 2.02
COL9A3-206ENST00000466532 ACEP12821 1306 aa27.67■■■□□ 2.02
COL9A3-206ENST00000466532 CENPJQ9HC77 1338 aaPredicted RBP27.66■■■□□ 2.02
COL9A3-206ENST00000466532 A0A0G2JS52 829 aa27.65■■■□□ 2.02
COL9A3-206ENST00000466532 MYT1Q01538 1121 aa27.65■■■□□ 2.02
COL9A3-206ENST00000466532 PRDM11Q9NQV5 511 aa27.65■■■□□ 2.02
COL9A3-206ENST00000466532 NBPF8Q3BBV2 869 aa27.64■■■□□ 2.02
COL9A3-206ENST00000466532 KRT27Q7Z3Y8 459 aa27.64■■■□□ 2.02
COL9A3-206ENST00000466532 PLEKHG3A1L390 1219 aa27.63■■■□□ 2.01
COL9A3-206ENST00000466532 FAM98CQ17RN3 349 aaKnown RBP27.63■■■□□ 2.01
COL9A3-206ENST00000466532 L3MBTL2Q969R5 705 aa27.63■■■□□ 2.01
COL9A3-206ENST00000466532 ZRANB1Q9UGI0 708 aa27.63■■■□□ 2.01
COL9A3-206ENST00000466532 SRPK2P78362 688 aaKnown RBP27.62■■■□□ 2.01
COL9A3-206ENST00000466532 NUTM2GQ5VZR2 741 aa27.62■■■□□ 2.01
COL9A3-206ENST00000466532 KIAA0232Q92628 1395 aa27.61■■■□□ 2.01
COL9A3-206ENST00000466532 NRKQ7Z2Y5 1582 aa27.61■■■□□ 2.01
COL9A3-206ENST00000466532 PPIP5K1Q6PFW1 1433 aa27.6■■■□□ 2.01
COL9A3-206ENST00000466532 THSD7AQ9UPZ6 1657 aa27.6■■■□□ 2.01
COL9A3-206ENST00000466532 SIN3AQ96ST3 1273 aa27.6■■■□□ 2.01
COL9A3-206ENST00000466532 SF3B2Q13435 895 aaKnown RBP27.59■■■□□ 2.01
COL9A3-206ENST00000466532 SPATA31A5Q5VU36 1347 aa27.59■■■□□ 2.01
COL9A3-206ENST00000466532 SPATA31A7Q8IWB4 1347 aa27.59■■■□□ 2.01
COL9A3-206ENST00000466532 ZC3H6P61129 1189 aaKnown RBP27.57■■■□□ 2
COL9A3-206ENST00000466532 CHRNA2Q15822 529 aa27.57■■■□□ 2
COL9A3-206ENST00000466532 CABP2Q9NPB3 220 aa27.57■■■□□ 2
COL9A3-206ENST00000466532 RGPD1P0DJD0 1748 aa27.57■■■□□ 2
COL9A3-206ENST00000466532 DEFB132Q7Z7B7 95 aa27.56■■■□□ 2
COL9A3-206ENST00000466532 ABTB2Q8N961 1025 aa27.56■■■□□ 2
COL9A3-206ENST00000466532 NEUROD1Q13562 356 aa27.55■■■□□ 2
COL9A3-206ENST00000466532 STRN4Q9NRL3 753 aa27.53■■■□□ 2
COL9A3-206ENST00000466532 LMO7Q8WWI1 1683 aa27.52■■■□□ 2
COL9A3-206ENST00000466532 SPATA31A1Q5TZJ5 1347 aa27.51■■□□□ 1.99
COL9A3-206ENST00000466532 ROCK2O75116 1388 aaKnown RBP27.49■■□□□ 1.99
COL9A3-206ENST00000466532 USP19O94966 1318 aa27.49■■□□□ 1.99
COL9A3-206ENST00000466532 TNS1Q9HBL0 1735 aaKnown RBP27.49■■□□□ 1.99
COL9A3-206ENST00000466532 CAMTA1Q9Y6Y1 1673 aa27.49■■□□□ 1.99
COL9A3-206ENST00000466532 BRD4O60885 1362 aaPredicted RBP27.48■■□□□ 1.99
COL9A3-206ENST00000466532 AKAP12Q02952 1782 aa27.48■■□□□ 1.99
COL9A3-206ENST00000466532 NLRP13Q86W25 1043 aa27.48■■□□□ 1.99
COL9A3-206ENST00000466532 CABP1Q9NZU7 370 aa27.48■■□□□ 1.99
COL9A3-206ENST00000466532 CPDO75976 1380 aa27.48■■□□□ 1.99
COL9A3-206ENST00000466532 USP6P35125 1406 aa27.47■■□□□ 1.99
COL9A3-206ENST00000466532 EVC2Q86UK5 1308 aa27.46■■□□□ 1.99
COL9A3-206ENST00000466532 EVA1CP58658 441 aa27.46■■□□□ 1.99
COL9A3-206ENST00000466532 FAM182BQ5T319 152 aa27.46■■□□□ 1.99
COL9A3-206ENST00000466532 SSH2Q76I76 1423 aa27.46■■□□□ 1.99
COL9A3-206ENST00000466532 PIK3C2AO00443 1686 aa27.46■■□□□ 1.99
COL9A3-206ENST00000466532 BAG6P46379 1132 aa27.44■■□□□ 1.98
COL9A3-206ENST00000466532 GCP02774 474 aa27.43■■□□□ 1.98
COL9A3-206ENST00000466532 USP35Q9P2H5 1018 aa27.43■■□□□ 1.98
COL9A3-206ENST00000466532 SRCAPQ6ZRS2 3230 aa27.41■■□□□ 1.98
COL9A3-206ENST00000466532 SLIT3O75094 1523 aa27.41■■□□□ 1.98
COL9A3-206ENST00000466532 NLRP6P59044 892 aa27.39■■□□□ 1.98
COL9A3-206ENST00000466532 LARP1Q6PKG0 1096 aaKnown RBP27.39■■□□□ 1.98
COL9A3-206ENST00000466532 PARP4Q9UKK3 1724 aaKnown RBP27.38■■□□□ 1.97
COL9A3-206ENST00000466532 COL5A2P05997 1499 aaPredicted RBP27.38■■□□□ 1.97
COL9A3-206ENST00000466532 RGPD5Q99666 1765 aa27.37■■□□□ 1.97
COL9A3-206ENST00000466532 BARGINQ6ZT62 677 aa27.37■■□□□ 1.97
COL9A3-206ENST00000466532 COL18A1P39060 1754 aa27.37■■□□□ 1.97
COL9A3-206ENST00000466532 ZBTB7CA1YPR0 619 aa27.36■■□□□ 1.97
COL9A3-206ENST00000466532 MON2Q7Z3U7 1717 aa27.36■■□□□ 1.97
COL9A3-206ENST00000466532 EN1Q05925 392 aaPredicted RBP27.35■■□□□ 1.97
COL9A3-206ENST00000466532 TCP11L2Q8N4U5 519 aa27.35■■□□□ 1.97
COL9A3-206ENST00000466532 FAM196AQ6ZSG2 479 aa27.34■■□□□ 1.97
COL9A3-206ENST00000466532 WNK3Q9BYP7 1800 aa27.34■■□□□ 1.97
COL9A3-206ENST00000466532 DISP2A7MBM2 1401 aa27.33■■□□□ 1.96
COL9A3-206ENST00000466532 LRP5O75197 1615 aa27.32■■□□□ 1.96
COL9A3-206ENST00000466532 PDE3BQ13370 1112 aa27.32■■□□□ 1.96
COL9A3-206ENST00000466532 ZNF692Q9BU19 519 aaPredicted RBP27.32■■□□□ 1.96
COL9A3-206ENST00000466532 THRAP3Q9Y2W1 955 aaKnown RBP27.31■■□□□ 1.96
COL9A3-206ENST00000466532 AATKQ6ZMQ8 1374 aa27.31■■□□□ 1.96
COL9A3-206ENST00000466532 CRB1P82279 1406 aa27.31■■□□□ 1.96
COL9A3-206ENST00000466532 TRIM37O94972 964 aa27.3■■□□□ 1.96
COL9A3-206ENST00000466532 TTC21BQ7Z4L5 1316 aa27.3■■□□□ 1.96
COL9A3-206ENST00000466532 SBNO2Q9Y2G9 1366 aa27.29■■□□□ 1.96
COL9A3-206ENST00000466532 CPSF1Q10570 1443 aaKnown RBP27.28■■□□□ 1.96
COL9A3-206ENST00000466532 TONSLQ96HA7 1378 aa27.28■■□□□ 1.96
COL9A3-206ENST00000466532 PSDA5PKW4 1024 aaPredicted RBP27.28■■□□□ 1.96
COL9A3-206ENST00000466532 CARD11Q9BXL7 1154 aa27.28■■□□□ 1.96
COL9A3-206ENST00000466532 KTN1Q86UP2 1357 aaKnown RBP27.27■■□□□ 1.96
COL9A3-206ENST00000466532 RREB1Q92766 1687 aa27.27■■□□□ 1.96
COL9A3-206ENST00000466532 LRRC37A3O60309 1634 aa27.27■■□□□ 1.96
COL9A3-206ENST00000466532 TTC21AQ8NDW8 1320 aa27.26■■□□□ 1.95
COL9A3-206ENST00000466532 SBF2Q86WG5 1849 aa27.26■■□□□ 1.95
COL9A3-206ENST00000466532 EZH2Q15910 746 aaKnown RBP27.25■■□□□ 1.95
COL9A3-206ENST00000466532 KCNH5Q8NCM2 988 aa27.24■■□□□ 1.95
COL9A3-206ENST00000466532 USP54Q70EL1 1684 aa27.24■■□□□ 1.95
COL9A3-206ENST00000466532 APBA3O96018 575 aa27.23■■□□□ 1.95
COL9A3-206ENST00000466532 PEAK1Q9H792 1746 aa27.23■■□□□ 1.95
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms