RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 CCDC66A2RUB6 948 aa22.82■■□□□ 1.24
CCDC88B-204ENST00000463837 CABP2Q9NPB3 220 aa22.82■■□□□ 1.24
CCDC88B-204ENST00000463837 TWISTNBQ3B726 338 aaPredicted RBP22.81■■□□□ 1.24
CCDC88B-204ENST00000463837 CFAP70Q5T0N1 1121 aa22.81■■□□□ 1.24
CCDC88B-204ENST00000463837 MRC2Q9UBG0 1479 aa22.81■■□□□ 1.24
CCDC88B-204ENST00000463837 NOM1Q5C9Z4 860 aaKnown RBP22.81■■□□□ 1.24
CCDC88B-204ENST00000463837 HMGXB3Q12766 1538 aa22.81■■□□□ 1.24
CCDC88B-204ENST00000463837 CHD1LQ86WJ1 897 aa22.81■■□□□ 1.24
CCDC88B-204ENST00000463837 NCOA1Q15788 1441 aa22.8■■□□□ 1.24
CCDC88B-204ENST00000463837 WDR33Q9C0J8 1336 aaKnown RBP22.8■■□□□ 1.24
CCDC88B-204ENST00000463837 MARCH6O60337 910 aa22.8■■□□□ 1.24
CCDC88B-204ENST00000463837 CEP89Q96ST8 783 aa22.8■■□□□ 1.24
CCDC88B-204ENST00000463837 TRIM5Q9C035 493 aa22.8■■□□□ 1.24
CCDC88B-204ENST00000463837 CCDC30Q5VVM6 783 aa22.79■■□□□ 1.24
CCDC88B-204ENST00000463837 AEBP1Q8IUX7 1158 aa22.79■■□□□ 1.24
CCDC88B-204ENST00000463837 PRKAR2BP31323 418 aa22.78■■□□□ 1.24
CCDC88B-204ENST00000463837 CCDC27Q2M243 656 aa22.78■■□□□ 1.24
CCDC88B-204ENST00000463837 ANKRD30BQ9BXX2 1392 aa22.78■■□□□ 1.24
CCDC88B-204ENST00000463837 CLASRPQ8N2M8 674 aaKnown RBP22.77■■□□□ 1.24
CCDC88B-204ENST00000463837 IFT140Q96RY7 1462 aa22.77■■□□□ 1.24
CCDC88B-204ENST00000463837 AEBP2Q6ZN18 517 aaPredicted RBP22.77■■□□□ 1.24
CCDC88B-204ENST00000463837 OLFM4Q6UX06 510 aa22.77■■□□□ 1.24
CCDC88B-204ENST00000463837 GNAI2P04899 355 aa22.76■■□□□ 1.23
CCDC88B-204ENST00000463837 ATF3P18847 181 aa22.76■■□□□ 1.23
CCDC88B-204ENST00000463837 SAFBQ15424 915 aaKnown RBP eCLIP22.76■■□□□ 1.23
CCDC88B-204ENST00000463837 CCDC192P0DO97 292 aa22.76■■□□□ 1.23
CCDC88B-204ENST00000463837 HSP90B2PQ58FF3 399 aa22.76■■□□□ 1.23
CCDC88B-204ENST00000463837 PCMTD1Q96MG8 357 aaPredicted RBP22.76■■□□□ 1.23
CCDC88B-204ENST00000463837 GAS2L2Q8NHY3 880 aa22.75■■□□□ 1.23
CCDC88B-204ENST00000463837 CWC15Q9P013 229 aaKnown RBP22.75■■□□□ 1.23
CCDC88B-204ENST00000463837 C1orf115Q9H7X2 142 aa22.75■■□□□ 1.23
CCDC88B-204ENST00000463837 PODXL2Q9NZ53 605 aa22.75■■□□□ 1.23
CCDC88B-204ENST00000463837 CCT4P50991 539 aaKnown RBP22.75■■□□□ 1.23
CCDC88B-204ENST00000463837 PCF11O94913 1555 aaKnown RBP22.75■■□□□ 1.23
CCDC88B-204ENST00000463837 PDIA4P13667 645 aaKnown RBP22.75■■□□□ 1.23
CCDC88B-204ENST00000463837 SDF4Q9BRK5 362 aa22.75■■□□□ 1.23
CCDC88B-204ENST00000463837 TSR2Q969E8 191 aaKnown RBP22.75■■□□□ 1.23
CCDC88B-204ENST00000463837 ZSCAN30Q86W11 494 aa22.74■■□□□ 1.23
CCDC88B-204ENST00000463837 ERC1Q8IUD2 1116 aa22.74■■□□□ 1.23
CCDC88B-204ENST00000463837 NOL10Q9BSC4 688 aaKnown RBP22.74■■□□□ 1.23
CCDC88B-204ENST00000463837 KINO60870 393 aaKnown RBP22.74■■□□□ 1.23
CCDC88B-204ENST00000463837 SRCIN1Q9C0H9 1055 aa22.74■■□□□ 1.23
CCDC88B-204ENST00000463837 MEX3CQ5U5Q3 659 aaKnown RBP22.73■■□□□ 1.23
CCDC88B-204ENST00000463837 AK7Q96M32 723 aa22.73■■□□□ 1.23
CCDC88B-204ENST00000463837 CC2D2AQ9P2K1 1620 aa22.73■■□□□ 1.23
CCDC88B-204ENST00000463837 NKTRP30414 1462 aaKnown RBP22.73■■□□□ 1.23
CCDC88B-204ENST00000463837 APPP05067 770 aa22.73■■□□□ 1.23
CCDC88B-204ENST00000463837 TMEM132EQ6IEE7 984 aa22.72■■□□□ 1.23
CCDC88B-204ENST00000463837 WWC1Q8IX03 1113 aa22.72■■□□□ 1.23
CCDC88B-204ENST00000463837 AMOTL1Q8IY63 956 aa22.72■■□□□ 1.23
CCDC88B-204ENST00000463837 ERCC4Q92889 916 aaPredicted RBP22.72■■□□□ 1.23
CCDC88B-204ENST00000463837 RALYLQ86SE5 291 aaKnown RBP22.72■■□□□ 1.23
CCDC88B-204ENST00000463837 SURF6O75683 361 aaKnown RBP22.72■■□□□ 1.23
CCDC88B-204ENST00000463837 ZNF396Q96N95 335 aaPredicted RBP22.72■■□□□ 1.23
CCDC88B-204ENST00000463837 POLA1P09884 1462 aaPredicted RBP22.72■■□□□ 1.23
CCDC88B-204ENST00000463837 MPNDQ8N594 471 aa22.71■■□□□ 1.23
CCDC88B-204ENST00000463837 PTPN23Q9H3S7 1636 aa22.71■■□□□ 1.23
CCDC88B-204ENST00000463837 ANKRD1Q15327 319 aa22.71■■□□□ 1.23
CCDC88B-204ENST00000463837 NESP48681 1621 aa22.71■■□□□ 1.23
CCDC88B-204ENST00000463837 RAPGEF4Q8WZA2 1011 aa22.71■■□□□ 1.23
CCDC88B-204ENST00000463837 VPS53Q5VIR6 699 aa22.7■■□□□ 1.23
CCDC88B-204ENST00000463837 NFXL1Q6ZNB6 911 aa22.7■■□□□ 1.23
CCDC88B-204ENST00000463837 FIBPO43427 364 aa22.7■■□□□ 1.22
CCDC88B-204ENST00000463837 FSD1Q9BTV5 496 aa22.7■■□□□ 1.22
CCDC88B-204ENST00000463837 ERICH2A1L162 156 aa22.7■■□□□ 1.22
CCDC88B-204ENST00000463837 PATL2C9JE40 543 aaKnown RBP22.7■■□□□ 1.22
CCDC88B-204ENST00000463837 UQCRHLA0A096LP55 91 aa22.69■■□□□ 1.22
CCDC88B-204ENST00000463837 UQCRHP07919 91 aa22.69■■□□□ 1.22
CCDC88B-204ENST00000463837 EPRSP07814 1512 aaKnown RBP22.69■■□□□ 1.22
CCDC88B-204ENST00000463837 PRG4Q92954 1404 aaPredicted RBP22.69■■□□□ 1.22
CCDC88B-204ENST00000463837 SPC24Q8NBT2 197 aa22.69■■□□□ 1.22
CCDC88B-204ENST00000463837 LRRCC1Q9C099 1032 aa22.69■■□□□ 1.22
CCDC88B-204ENST00000463837 TOPBP1Q92547 1522 aa22.68■■□□□ 1.22
CCDC88B-204ENST00000463837 RPAP2Q8IXW5 612 aaPredicted RBP22.68■■□□□ 1.22
CCDC88B-204ENST00000463837 RUFY1Q96T51 708 aa22.68■■□□□ 1.22
CCDC88B-204ENST00000463837 CYP46A1Q9Y6A2 500 aa22.68■■□□□ 1.22
CCDC88B-204ENST00000463837 CDR1P51861 262 aa22.67■■□□□ 1.22
CCDC88B-204ENST00000463837 SYTL4Q96C24 671 aaPredicted RBP22.67■■□□□ 1.22
CCDC88B-204ENST00000463837 SLC12A5Q9H2X9 1139 aa22.67■■□□□ 1.22
CCDC88B-204ENST00000463837 LRPPRCP42704 1394 aaKnown RBP22.67■■□□□ 1.22
CCDC88B-204ENST00000463837 C11orf95C9JLR9 678 aaPredicted RBP22.66■■□□□ 1.22
CCDC88B-204ENST00000463837 KRT85P78386 507 aa22.66■■□□□ 1.22
CCDC88B-204ENST00000463837 PDILTQ8N807 584 aa22.66■■□□□ 1.22
CCDC88B-204ENST00000463837 ZSCAN31Q96LW9 406 aaPredicted RBP22.66■■□□□ 1.22
CCDC88B-204ENST00000463837 RIC3Q7Z5B4 369 aa22.65■■□□□ 1.22
CCDC88B-204ENST00000463837 DHX16O60231 1041 aaKnown RBP22.65■■□□□ 1.22
CCDC88B-204ENST00000463837 RPGRIP1LQ68CZ1 1315 aa22.65■■□□□ 1.22
CCDC88B-204ENST00000463837 CCDC141Q6ZP82 1450 aa22.65■■□□□ 1.22
CCDC88B-204ENST00000463837 CCDC112Q8NEF3 446 aa22.65■■□□□ 1.22
CCDC88B-204ENST00000463837 TRIM34Q9BYJ4 488 aa22.64■■□□□ 1.22
CCDC88B-204ENST00000463837 RPRD2Q5VT52 1461 aaKnown RBP22.64■■□□□ 1.21
CCDC88B-204ENST00000463837 ABCC11Q96J66 1382 aa22.64■■□□□ 1.21
CCDC88B-204ENST00000463837 FCHSD2O94868 740 aa22.64■■□□□ 1.21
CCDC88B-204ENST00000463837 SKAP1Q86WV1 359 aa22.64■■□□□ 1.21
CCDC88B-204ENST00000463837 TNMDQ9H2S6 317 aa22.63■■□□□ 1.21
CCDC88B-204ENST00000463837 DNMBPQ6XZF7 1577 aa22.63■■□□□ 1.21
CCDC88B-204ENST00000463837 SMC2O95347 1197 aa22.62■■□□□ 1.21
CCDC88B-204ENST00000463837 DHX29Q7Z478 1369 aaKnown RBP22.62■■□□□ 1.21
CCDC88B-204ENST00000463837 ATAD2Q6PL18 1390 aa22.62■■□□□ 1.21
CCDC88B-204ENST00000463837 XBP1P17861 261 aa22.62■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms