RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 KIAA0754O94854 1291 aa7.26□□□□□ -1.25
SCN1A-203ENST00000409050 NOL8Q76FK4 1167 aaKnown RBP7.26□□□□□ -1.25
SCN1A-203ENST00000409050 NEMFO60524 1076 aa7.26□□□□□ -1.25
SCN1A-203ENST00000409050 VPS37DQ86XT2 251 aa7.26□□□□□ -1.25
SCN1A-203ENST00000409050 ANKRD50Q9ULJ7 1429 aa7.25□□□□□ -1.25
SCN1A-203ENST00000409050 CAVIN2O95810 425 aa7.25□□□□□ -1.25
SCN1A-203ENST00000409050 DESP17661 470 aa7.25□□□□□ -1.25
SCN1A-203ENST00000409050 FOXD1Q16676 465 aa7.25□□□□□ -1.25
SCN1A-203ENST00000409050 CFAP45Q9UL16 551 aa7.25□□□□□ -1.25
SCN1A-203ENST00000409050 LRRC9Q6ZRR7 1453 aa7.25□□□□□ -1.25
SCN1A-203ENST00000409050 SMC2O95347 1197 aa7.25□□□□□ -1.25
SCN1A-203ENST00000409050 MCM5P33992 734 aa7.25□□□□□ -1.25
SCN1A-203ENST00000409050 ZNF692Q9BU19 519 aaPredicted RBP7.25□□□□□ -1.25
SCN1A-203ENST00000409050 FOXD4L1Q9NU39 408 aa7.25□□□□□ -1.25
SCN1A-203ENST00000409050 CTNNA3Q9UI47 895 aa7.25□□□□□ -1.25
SCN1A-203ENST00000409050 GNL3LQ9NVN8 582 aaKnown RBP7.25□□□□□ -1.25
SCN1A-203ENST00000409050 TSPYL4Q9UJ04 414 aa7.25□□□□□ -1.25
SCN1A-203ENST00000409050 PPP6R1Q9UPN7 881 aa7.25□□□□□ -1.25
SCN1A-203ENST00000409050 FANCD2Q9BXW9 1451 aa7.25□□□□□ -1.25
SCN1A-203ENST00000409050 POLR3GO15318 223 aaPredicted RBP7.25□□□□□ -1.25
SCN1A-203ENST00000409050 EZRP15311 586 aaKnown RBP7.25□□□□□ -1.25
SCN1A-203ENST00000409050 RAPGEF4Q8WZA2 1011 aa7.25□□□□□ -1.25
SCN1A-203ENST00000409050 TRIM5Q9C035 493 aa7.25□□□□□ -1.25
SCN1A-203ENST00000409050 NOL7Q9UMY1 257 aaKnown RBP7.25□□□□□ -1.25
SCN1A-203ENST00000409050 EHBP1L1Q8N3D4 1523 aa7.25□□□□□ -1.25
SCN1A-203ENST00000409050 APPP05067 770 aa7.25□□□□□ -1.25
SCN1A-203ENST00000409050 KRT85P78386 507 aa7.25□□□□□ -1.25
SCN1A-203ENST00000409050 DEF6Q9H4E7 631 aa7.25□□□□□ -1.25
SCN1A-203ENST00000409050 ABCC11Q96J66 1382 aa7.24□□□□□ -1.25
SCN1A-203ENST00000409050 POTEB2H3BUK9 544 aa7.24□□□□□ -1.25
SCN1A-203ENST00000409050 SYCP1Q15431 976 aa7.24□□□□□ -1.25
SCN1A-203ENST00000409050 WWC2Q6AWC2 1192 aa7.24□□□□□ -1.25
SCN1A-203ENST00000409050 CCAR1Q8IX12 1150 aaKnown RBP7.24□□□□□ -1.25
SCN1A-203ENST00000409050 TRIM22Q8IYM9 498 aa7.24□□□□□ -1.25
SCN1A-203ENST00000409050 TUBB4AP04350 444 aa7.24□□□□□ -1.25
SCN1A-203ENST00000409050 CCDC57Q2TAC2 916 aa7.24□□□□□ -1.25
SCN1A-203ENST00000409050 SUGP2Q8IX01 1082 aaKnown RBP eCLIP7.24□□□□□ -1.25
SCN1A-203ENST00000409050 CCDC112Q8NEF3 446 aa7.24□□□□□ -1.25
SCN1A-203ENST00000409050 NAP1L1P55209 391 aaKnown RBP7.24□□□□□ -1.25
SCN1A-203ENST00000409050 HSP90AB2PQ58FF8 381 aa7.24□□□□□ -1.25
SCN1A-203ENST00000409050 PPFIBP1Q86W92 1011 aa7.24□□□□□ -1.25
SCN1A-203ENST00000409050 NACAP1Q9BZK3 213 aa7.24□□□□□ -1.25
SCN1A-203ENST00000409050 PLEKHO1Q53GL0 409 aaPredicted RBP7.23□□□□□ -1.25
SCN1A-203ENST00000409050 DDX11Q96FC9 970 aa7.23□□□□□ -1.25
SCN1A-203ENST00000409050 SENP3-EIF4A1A0A087X0R7 540 aa7.23□□□□□ -1.25
SCN1A-203ENST00000409050 GNAI2P04899 355 aa7.23□□□□□ -1.25
SCN1A-203ENST00000409050 MAP9Q49MG5 647 aa7.23□□□□□ -1.25
SCN1A-203ENST00000409050 RPAP2Q8IXW5 612 aaPredicted RBP7.23□□□□□ -1.25
SCN1A-203ENST00000409050 CEP131Q9UPN4 1083 aa7.23□□□□□ -1.25
SCN1A-203ENST00000409050 CYP46A1Q9Y6A2 500 aa7.23□□□□□ -1.25
SCN1A-203ENST00000409050 CEP57L1Q8IYX8 460 aa7.23□□□□□ -1.25
SCN1A-203ENST00000409050 AKNAQ7Z591 1439 aa7.23□□□□□ -1.25
SCN1A-203ENST00000409050 GAPVD1Q14C86 1478 aa7.23□□□□□ -1.25
SCN1A-203ENST00000409050 EVA1CP58658 441 aa7.23□□□□□ -1.25
SCN1A-203ENST00000409050 PYM1Q9BRP8 204 aaKnown RBP7.23□□□□□ -1.25
SCN1A-203ENST00000409050 PHAXQ9H814 394 aaKnown RBP7.23□□□□□ -1.25
SCN1A-203ENST00000409050 K7ELQ4 463 aaPredicted RBP7.23□□□□□ -1.25
SCN1A-203ENST00000409050 CDK5RAP3Q96JB5 506 aa7.23□□□□□ -1.25
SCN1A-203ENST00000409050 ATAD2Q6PL18 1390 aa7.23□□□□□ -1.25
SCN1A-203ENST00000409050 CTAGE5O15320 804 aa7.22□□□□□ -1.25
SCN1A-203ENST00000409050 STK38Q15208 465 aa7.22□□□□□ -1.25
SCN1A-203ENST00000409050 CCDC83Q8IWF9 413 aa7.22□□□□□ -1.25
SCN1A-203ENST00000409050 GPRASP1Q5JY77 1395 aa7.22□□□□□ -1.25
SCN1A-203ENST00000409050 ANKRD30BQ9BXX2 1392 aa7.22□□□□□ -1.25
SCN1A-203ENST00000409050 GOLGA6L9A6NEM1 432 aa7.22□□□□□ -1.25
SCN1A-203ENST00000409050 CETN2P41208 172 aa7.22□□□□□ -1.25
SCN1A-203ENST00000409050 TUBB4BP68371 445 aa7.22□□□□□ -1.25
SCN1A-203ENST00000409050 PSME1Q06323 249 aa7.22□□□□□ -1.25
SCN1A-203ENST00000409050 RBM33Q96EV2 1170 aaKnown RBP7.22□□□□□ -1.25
SCN1A-203ENST00000409050 RIC3Q7Z5B4 369 aa7.22□□□□□ -1.25
SCN1A-203ENST00000409050 FSD1Q9BTV5 496 aa7.22□□□□□ -1.25
SCN1A-203ENST00000409050 CCDC9Q9Y3X0 531 aaKnown RBP7.22□□□□□ -1.25
SCN1A-203ENST00000409050 BMP2KQ9NSY1 1161 aaPredicted RBP7.22□□□□□ -1.25
SCN1A-203ENST00000409050 CCDC158Q5M9N0 1113 aa7.21□□□□□ -1.25
SCN1A-203ENST00000409050 DDX12PQ92771 950 aa7.21□□□□□ -1.25
SCN1A-203ENST00000409050 ZSCAN12O43309 604 aa7.21□□□□□ -1.26
SCN1A-203ENST00000409050 KIAA1107Q9UPP5 1409 aa7.21□□□□□ -1.26
SCN1A-203ENST00000409050 KIF20AO95235 890 aa7.21□□□□□ -1.26
SCN1A-203ENST00000409050 TRIM21P19474 475 aaKnown RBP7.21□□□□□ -1.26
SCN1A-203ENST00000409050 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.21□□□□□ -1.26
SCN1A-203ENST00000409050 IMMTQ16891 758 aaKnown RBP7.21□□□□□ -1.26
SCN1A-203ENST00000409050 FOXD4L5Q5VV16 416 aaPredicted RBP7.21□□□□□ -1.26
SCN1A-203ENST00000409050 JAKMIP3Q5VZ66 844 aa7.21□□□□□ -1.26
SCN1A-203ENST00000409050 FOXD4L4Q8WXT5 416 aaPredicted RBP7.21□□□□□ -1.26
SCN1A-203ENST00000409050 RRP7AQ9Y3A4 280 aaKnown RBP7.21□□□□□ -1.26
SCN1A-203ENST00000409050 WIZO95785 1651 aa7.21□□□□□ -1.26
SCN1A-203ENST00000409050 MICALCLQ6ZW33 695 aa7.2□□□□□ -1.26
SCN1A-203ENST00000409050 SYNJ2O15056 1496 aa7.2□□□□□ -1.26
SCN1A-203ENST00000409050 FGFR1OPO95684 399 aaKnown RBP7.2□□□□□ -1.26
SCN1A-203ENST00000409050 SH2B1Q9NRF2 756 aaPredicted RBP7.2□□□□□ -1.26
SCN1A-203ENST00000409050 IGF1RP08069 1367 aa7.2□□□□□ -1.26
SCN1A-203ENST00000409050 NCOA2Q15596 1464 aa7.2□□□□□ -1.26
SCN1A-203ENST00000409050 RAB11FIP3O75154 756 aa7.2□□□□□ -1.26
SCN1A-203ENST00000409050 CCDC181Q5TID7 509 aa7.2□□□□□ -1.26
SCN1A-203ENST00000409050 CCDC148Q8NFR7 591 aa7.2□□□□□ -1.26
SCN1A-203ENST00000409050 GTPBP4Q9BZE4 634 aaKnown RBP7.2□□□□□ -1.26
SCN1A-203ENST00000409050 LNPKQ9C0E8 428 aa7.2□□□□□ -1.26
SCN1A-203ENST00000409050 UTP3Q9NQZ2 479 aaKnown RBP eCLIP7.2□□□□□ -1.26
SCN1A-203ENST00000409050 PRKCSHP14314 528 aaPredicted RBP7.2□□□□□ -1.26
SCN1A-203ENST00000409050 WASHC4Q2M389 1173 aa7.2□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms