RNA–Protein interactions for RNA: ENST00000400337.6

COL18A1-204, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL18A1, Length 5,436 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-204ENST00000400337 TPM2P07951 284 aa21.97■■□□□ 1.11
COL18A1-204ENST00000400337 CCAR2Q8N163 923 aaKnown RBP21.97■■□□□ 1.11
COL18A1-204ENST00000400337 SMG6Q86US8 1419 aaKnown RBP21.96■■□□□ 1.11
COL18A1-204ENST00000400337 FAM177BA6PVY3 158 aa21.96■■□□□ 1.11
COL18A1-204ENST00000400337 RRS1Q15050 365 aaKnown RBP21.96■■□□□ 1.11
COL18A1-204ENST00000400337 STRN4Q9NRL3 753 aa21.96■■□□□ 1.11
COL18A1-204ENST00000400337 CCDC27Q2M243 656 aa21.95■■□□□ 1.1
COL18A1-204ENST00000400337 A0A0U1RQG5 324 aaPredicted RBP21.95■■□□□ 1.1
COL18A1-204ENST00000400337 DNAJC2Q99543 621 aaKnown RBP21.95■■□□□ 1.1
COL18A1-204ENST00000400337 FYB1O15117 783 aa21.95■■□□□ 1.1
COL18A1-204ENST00000400337 TATP17735 454 aaPredicted RBP21.95■■□□□ 1.1
COL18A1-204ENST00000400337 ATF7IPQ6VMQ6 1270 aa21.95■■□□□ 1.1
COL18A1-204ENST00000400337 RBM42Q9BTD8 480 aaKnown RBP21.95■■□□□ 1.1
COL18A1-204ENST00000400337 ARHGEF11O15085 1522 aa21.94■■□□□ 1.1
COL18A1-204ENST00000400337 PSMA5P28066 241 aa21.94■■□□□ 1.1
COL18A1-204ENST00000400337 NEK4P51957 841 aa21.94■■□□□ 1.1
COL18A1-204ENST00000400337 SAFBQ15424 915 aaKnown RBP eCLIP21.94■■□□□ 1.1
COL18A1-204ENST00000400337 SASS6Q6UVJ0 657 aa21.94■■□□□ 1.1
COL18A1-204ENST00000400337 CCDC73Q6ZRK6 1079 aa21.94■■□□□ 1.1
COL18A1-204ENST00000400337 ZNF592Q92610 1267 aa21.94■■□□□ 1.1
COL18A1-204ENST00000400337 RSPH6AQ9H0K4 717 aa21.94■■□□□ 1.1
COL18A1-204ENST00000400337 ABCA10Q8WWZ4 1543 aa21.94■■□□□ 1.1
COL18A1-204ENST00000400337 ZNF530Q6P9A1 599 aaPredicted RBP21.93■■□□□ 1.1
COL18A1-204ENST00000400337 HOOK1Q9UJC3 728 aaKnown RBP21.93■■□□□ 1.1
COL18A1-204ENST00000400337 ATAD2Q6PL18 1390 aa21.93■■□□□ 1.1
COL18A1-204ENST00000400337 ZSCAN21Q9Y5A6 473 aaPredicted RBP21.93■■□□□ 1.1
COL18A1-204ENST00000400337 CT47B1P0C2W7 299 aaPredicted RBP21.92■■□□□ 1.1
COL18A1-204ENST00000400337 CCDC47Q96A33 483 aaKnown RBP21.92■■□□□ 1.1
COL18A1-204ENST00000400337 HSP90AA2PQ14568 343 aaPredicted RBP21.92■■□□□ 1.1
COL18A1-204ENST00000400337 PCMTD1Q96MG8 357 aaPredicted RBP21.92■■□□□ 1.1
COL18A1-204ENST00000400337 CCT4P50991 539 aaKnown RBP21.91■■□□□ 1.1
COL18A1-204ENST00000400337 MVPQ14764 893 aaKnown RBP21.91■■□□□ 1.1
COL18A1-204ENST00000400337 CTDP1Q9Y5B0 961 aaPredicted RBP21.91■■□□□ 1.1
COL18A1-204ENST00000400337 ZNF428Q96B54 188 aa21.9■■□□□ 1.1
COL18A1-204ENST00000400337 TCEAL9Q9UHQ7 104 aa21.9■■□□□ 1.1
COL18A1-204ENST00000400337 ANKRD20A12PQ8NF67 263 aa21.9■■□□□ 1.1
COL18A1-204ENST00000400337 PCF11O94913 1555 aaKnown RBP21.9■■□□□ 1.1
COL18A1-204ENST00000400337 KIF6Q6ZMV9 814 aa21.9■■□□□ 1.1
COL18A1-204ENST00000400337 NSD3Q9BZ95 1437 aa21.89■■□□□ 1.1
COL18A1-204ENST00000400337 IQGAP2Q13576 1575 aa21.89■■□□□ 1.1
COL18A1-204ENST00000400337 ERC1Q8IUD2 1116 aa21.89■■□□□ 1.09
COL18A1-204ENST00000400337 CCDC141Q6ZP82 1450 aa21.89■■□□□ 1.09
COL18A1-204ENST00000400337 MAGI1Q96QZ7 1491 aaPredicted RBP21.89■■□□□ 1.09
COL18A1-204ENST00000400337 SRCIN1Q9C0H9 1055 aa21.89■■□□□ 1.09
COL18A1-204ENST00000400337 TBC1D2BQ9UPU7 963 aa21.88■■□□□ 1.09
COL18A1-204ENST00000400337 FCHSD2O94868 740 aa21.88■■□□□ 1.09
COL18A1-204ENST00000400337 RABEP1Q15276 862 aa21.88■■□□□ 1.09
COL18A1-204ENST00000400337 CABP4P57796 275 aa21.87■■□□□ 1.09
COL18A1-204ENST00000400337 IPO7O95373 1038 aaKnown RBP21.87■■□□□ 1.09
COL18A1-204ENST00000400337 ANKLE2Q86XL3 938 aa21.87■■□□□ 1.09
COL18A1-204ENST00000400337 WWC1Q8IX03 1113 aa21.87■■□□□ 1.09
COL18A1-204ENST00000400337 ANO8Q9HCE9 1232 aaPredicted RBP21.87■■□□□ 1.09
COL18A1-204ENST00000400337 KDM4AO75164 1064 aa21.86■■□□□ 1.09
COL18A1-204ENST00000400337 LRRCC1Q9C099 1032 aa21.86■■□□□ 1.09
COL18A1-204ENST00000400337 PLB1Q6P1J6 1458 aa21.86■■□□□ 1.09
COL18A1-204ENST00000400337 TNNT3P45378 269 aaPredicted RBP21.86■■□□□ 1.09
COL18A1-204ENST00000400337 TOM1L2Q6ZVM7 507 aa21.86■■□□□ 1.09
COL18A1-204ENST00000400337 DDX54Q8TDD1 881 aaKnown RBP21.86■■□□□ 1.09
COL18A1-204ENST00000400337 HIP1O00291 1037 aa21.86■■□□□ 1.09
COL18A1-204ENST00000400337 NUDT16Q96DE0 195 aaKnown RBP21.86■■□□□ 1.09
COL18A1-204ENST00000400337 SIL1Q9H173 461 aa21.85■■□□□ 1.09
COL18A1-204ENST00000400337 CAMSAP2Q08AD1 1489 aa21.85■■□□□ 1.09
COL18A1-204ENST00000400337 C11orf95C9JLR9 678 aaPredicted RBP21.85■■□□□ 1.09
COL18A1-204ENST00000400337 BACH2Q9BYV9 841 aa21.85■■□□□ 1.09
COL18A1-204ENST00000400337 CCDC61Q9Y6R9 512 aa21.85■■□□□ 1.09
COL18A1-204ENST00000400337 ABCC5O15440 1437 aa21.85■■□□□ 1.09
COL18A1-204ENST00000400337 HOMER1Q86YM7 354 aa21.84■■□□□ 1.09
COL18A1-204ENST00000400337 TRAK2O60296 914 aa21.84■■□□□ 1.09
COL18A1-204ENST00000400337 TMPOP42166 694 aaKnown RBP21.84■■□□□ 1.09
COL18A1-204ENST00000400337 MTMR7Q9Y216 660 aa21.84■■□□□ 1.09
COL18A1-204ENST00000400337 MCM2P49736 904 aa21.84■■□□□ 1.09
COL18A1-204ENST00000400337 SLFN5Q08AF3 891 aa21.84■■□□□ 1.09
COL18A1-204ENST00000400337 RNF214Q8ND24 703 aa21.84■■□□□ 1.09
COL18A1-204ENST00000400337 MYL6BP14649 208 aa21.84■■□□□ 1.09
COL18A1-204ENST00000400337 SAMD1Q6SPF0 538 aaPredicted RBP21.84■■□□□ 1.09
COL18A1-204ENST00000400337 WAPLQ7Z5K2 1190 aa21.83■■□□□ 1.09
COL18A1-204ENST00000400337 SDF4Q9BRK5 362 aa21.83■■□□□ 1.08
COL18A1-204ENST00000400337 XPCQ01831 940 aaPredicted RBP21.82■■□□□ 1.08
COL18A1-204ENST00000400337 NFE2L2Q16236 605 aa21.82■■□□□ 1.08
COL18A1-204ENST00000400337 SPG7Q9UQ90 795 aa21.82■■□□□ 1.08
COL18A1-204ENST00000400337 CNNM1Q9NRU3 951 aa21.82■■□□□ 1.08
COL18A1-204ENST00000400337 CHD1LQ86WJ1 897 aa21.82■■□□□ 1.08
COL18A1-204ENST00000400337 CAVIN1Q6NZI2 390 aaKnown RBP21.81■■□□□ 1.08
COL18A1-204ENST00000400337 SART3Q15020 963 aaKnown RBP21.81■■□□□ 1.08
COL18A1-204ENST00000400337 DNAJC5BQ9UF47 199 aa21.81■■□□□ 1.08
COL18A1-204ENST00000400337 MAP4K4O95819 1239 aaPredicted RBP21.8■■□□□ 1.08
COL18A1-204ENST00000400337 NASPP49321 788 aaPredicted RBP21.8■■□□□ 1.08
COL18A1-204ENST00000400337 MRE11P49959 708 aa21.8■■□□□ 1.08
COL18A1-204ENST00000400337 BRMS1Q9HCU9 246 aa21.8■■□□□ 1.08
COL18A1-204ENST00000400337 CCDC158Q5M9N0 1113 aa21.8■■□□□ 1.08
COL18A1-204ENST00000400337 PRPF40AO75400 957 aaKnown RBP21.8■■□□□ 1.08
COL18A1-204ENST00000400337 XBP1P17861 261 aa21.8■■□□□ 1.08
COL18A1-204ENST00000400337 THUMPD2Q9BTF0 503 aaKnown RBP21.8■■□□□ 1.08
COL18A1-204ENST00000400337 PTPN23Q9H3S7 1636 aa21.79■■□□□ 1.08
COL18A1-204ENST00000400337 TTC39AQ5SRH9 613 aa21.79■■□□□ 1.08
COL18A1-204ENST00000400337 BTBD11A6QL63 1104 aa21.79■■□□□ 1.08
COL18A1-204ENST00000400337 SRGAP3O43295 1099 aa21.78■■□□□ 1.08
COL18A1-204ENST00000400337 PDCP20941 246 aa21.78■■□□□ 1.08
COL18A1-204ENST00000400337 CCDC70Q6NSX1 233 aa21.78■■□□□ 1.08
COL18A1-204ENST00000400337 PRDM11Q9NQV5 511 aa21.78■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms