RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 MAP2P11137 1827 aaKnown RBP33.17■■■□□ 2.9
SHOX2-201ENST00000389589 IQSEC2Q5JU85 1478 aa33.16■■■□□ 2.9
SHOX2-201ENST00000389589 DUSP27Q5VZP5 1158 aa33.16■■■□□ 2.9
SHOX2-201ENST00000389589 SLFN5Q08AF3 891 aa33.15■■■□□ 2.9
SHOX2-201ENST00000389589 PNPLA6Q8IY17 1366 aa33.15■■■□□ 2.9
SHOX2-201ENST00000389589 NCKAP5LQ9HCH0 1330 aa33.15■■■□□ 2.9
SHOX2-201ENST00000389589 PLEKHG3A1L390 1219 aa33.14■■■□□ 2.9
SHOX2-201ENST00000389589 NCBP3Q53F19 620 aaKnown RBP33.14■■■□□ 2.9
SHOX2-201ENST00000389589 CHD2O14647 1828 aaKnown RBP33.13■■■□□ 2.89
SHOX2-201ENST00000389589 TRMT2AQ8IZ69 625 aaKnown RBP33.13■■■□□ 2.89
SHOX2-201ENST00000389589 U2AF1L5P0DN76 240 aaPredicted RBP33.12■■■□□ 2.89
SHOX2-201ENST00000389589 U2AF1Q01081 240 aaKnown RBP eCLIP33.12■■■□□ 2.89
SHOX2-201ENST00000389589 NRKQ7Z2Y5 1582 aa33.12■■■□□ 2.89
SHOX2-201ENST00000389589 E9PSI1 815 aa33.09■■■□□ 2.89
SHOX2-201ENST00000389589 TCP11L2Q8N4U5 519 aa33.09■■■□□ 2.89
SHOX2-201ENST00000389589 NME9Q86XW9 330 aa33.08■■■□□ 2.89
SHOX2-201ENST00000389589 AATKQ6ZMQ8 1374 aa33.08■■■□□ 2.89
SHOX2-201ENST00000389589 DIAPH1O60610 1272 aaKnown RBP33.07■■■□□ 2.88
SHOX2-201ENST00000389589 WWC1Q8IX03 1113 aa33.06■■■□□ 2.88
SHOX2-201ENST00000389589 COG3Q96JB2 828 aa33.06■■■□□ 2.88
SHOX2-201ENST00000389589 ACEP12821 1306 aa33.06■■■□□ 2.88
SHOX2-201ENST00000389589 NKTRP30414 1462 aaKnown RBP33.05■■■□□ 2.88
SHOX2-201ENST00000389589 CCDC27Q2M243 656 aa33.05■■■□□ 2.88
SHOX2-201ENST00000389589 POLKQ9UBT6 870 aa33.05■■■□□ 2.88
SHOX2-201ENST00000389589 KCNA6P17658 529 aa33.05■■■□□ 2.88
SHOX2-201ENST00000389589 RGPD8O14715 1765 aaPredicted RBP33.04■■■□□ 2.88
SHOX2-201ENST00000389589 PHF23Q9BUL5 403 aaPredicted RBP33.03■■■□□ 2.88
SHOX2-201ENST00000389589 U2SURPO15042 1029 aaKnown RBP33.03■■■□□ 2.88
SHOX2-201ENST00000389589 USP6P35125 1406 aa33.03■■■□□ 2.88
SHOX2-201ENST00000389589 PNNQ9H307 717 aaKnown RBP33.02■■■□□ 2.88
SHOX2-201ENST00000389589 ANKARQ7Z5J8 1434 aa33.02■■■□□ 2.88
SHOX2-201ENST00000389589 TTC21BQ7Z4L5 1316 aa33.01■■■□□ 2.87
SHOX2-201ENST00000389589 FMN2Q9NZ56 1722 aa33.01■■■□□ 2.87
SHOX2-201ENST00000389589 CDK12Q9NYV4 1490 aaPredicted RBP33.01■■■□□ 2.87
SHOX2-201ENST00000389589 WDR63Q8IWG1 891 aa33■■■□□ 2.87
SHOX2-201ENST00000389589 NUTM2FA1L443 756 aa32.99■■■□□ 2.87
SHOX2-201ENST00000389589 SPINK5Q9NQ38 1064 aaPredicted RBP32.98■■■□□ 2.87
SHOX2-201ENST00000389589 B4GALNT3Q6L9W6 998 aa32.97■■■□□ 2.87
SHOX2-201ENST00000389589 PLEKHF1Q96S99 279 aa32.97■■■□□ 2.87
SHOX2-201ENST00000389589 ZRANB1Q9UGI0 708 aa32.97■■■□□ 2.87
SHOX2-201ENST00000389589 NEUROD2Q15784 382 aa32.96■■■□□ 2.87
SHOX2-201ENST00000389589 RRP7AQ9Y3A4 280 aaKnown RBP32.96■■■□□ 2.87
SHOX2-201ENST00000389589 NPHP4O75161 1426 aaPredicted RBP32.96■■■□□ 2.87
SHOX2-201ENST00000389589 NALCNQ8IZF0 1738 aa32.95■■■□□ 2.87
SHOX2-201ENST00000389589 SSH2Q76I76 1423 aa32.95■■■□□ 2.87
SHOX2-201ENST00000389589 MAPK8IP3Q9UPT6 1336 aa32.94■■■□□ 2.86
SHOX2-201ENST00000389589 PPM1GO15355 546 aaPredicted RBP32.93■■■□□ 2.86
SHOX2-201ENST00000389589 DMRT2Q9Y5R5 561 aa32.93■■■□□ 2.86
SHOX2-201ENST00000389589 TTC21AQ8NDW8 1320 aa32.93■■■□□ 2.86
SHOX2-201ENST00000389589 OVOS2A0A0J9YW53 1432 aa32.93■■■□□ 2.86
SHOX2-201ENST00000389589 OVOS2Q6IE36 1432 aa32.93■■■□□ 2.86
SHOX2-201ENST00000389589 FCHSD2O94868 740 aa32.92■■■□□ 2.86
SHOX2-201ENST00000389589 FBLN1P23142 703 aa32.92■■■□□ 2.86
SHOX2-201ENST00000389589 EMILIN1Q9Y6C2 1016 aa32.91■■■□□ 2.86
SHOX2-201ENST00000389589 GOLGA6L2Q8N9W4 650 aaPredicted RBP32.9■■■□□ 2.86
SHOX2-201ENST00000389589 CCDC136Q96JN2 1154 aa32.9■■■□□ 2.86
SHOX2-201ENST00000389589 NGDNQ8NEJ9 315 aaKnown RBP32.88■■■□□ 2.85
SHOX2-201ENST00000389589 LRRC7Q96NW7 1537 aa32.87■■■□□ 2.85
SHOX2-201ENST00000389589 TMPOP42166 694 aaKnown RBP32.87■■■□□ 2.85
SHOX2-201ENST00000389589 PMFBP1Q8TBY8 1022 aa32.87■■■□□ 2.85
SHOX2-201ENST00000389589 TSHZ2Q9NRE2 1034 aa32.87■■■□□ 2.85
SHOX2-201ENST00000389589 EXOC6Q8TAG9 804 aa32.86■■■□□ 2.85
SHOX2-201ENST00000389589 PLIN1O60240 522 aa32.85■■■□□ 2.85
SHOX2-201ENST00000389589 USP31Q70CQ4 1352 aa32.85■■■□□ 2.85
SHOX2-201ENST00000389589 IL13P35225 146 aa32.84■■■□□ 2.85
SHOX2-201ENST00000389589 MYH16Q9H6N6 1097 aa32.83■■■□□ 2.85
SHOX2-201ENST00000389589 NEFMP07197 916 aa32.82■■■□□ 2.85
SHOX2-201ENST00000389589 RRS1Q15050 365 aaKnown RBP32.82■■■□□ 2.85
SHOX2-201ENST00000389589 RSPH6AQ9H0K4 717 aa32.82■■■□□ 2.85
SHOX2-201ENST00000389589 NWD1Q149M9 1564 aa32.81■■■□□ 2.84
SHOX2-201ENST00000389589 ADGRL3Q9HAR2 1447 aa32.81■■■□□ 2.84
SHOX2-201ENST00000389589 PIK3C2AO00443 1686 aa32.78■■■□□ 2.84
SHOX2-201ENST00000389589 USP54Q70EL1 1684 aa32.77■■■□□ 2.84
SHOX2-201ENST00000389589 PRKAR2BP31323 418 aa32.77■■■□□ 2.84
SHOX2-201ENST00000389589 TRIM35Q9UPQ4 493 aa32.77■■■□□ 2.84
SHOX2-201ENST00000389589 IL16Q14005 1332 aa32.77■■■□□ 2.84
SHOX2-201ENST00000389589 RIPK4P57078 832 aa32.76■■■□□ 2.83
SHOX2-201ENST00000389589 CRBNQ96SW2 442 aa32.74■■■□□ 2.83
SHOX2-201ENST00000389589 PEAK1Q9H792 1746 aa32.73■■■□□ 2.83
SHOX2-201ENST00000389589 HMOX1P09601 288 aa32.7■■■□□ 2.83
SHOX2-201ENST00000389589 PHF8Q9UPP1 1060 aa32.7■■■□□ 2.83
SHOX2-201ENST00000389589 BCAR3O75815 825 aa32.69■■■□□ 2.82
SHOX2-201ENST00000389589 C20orf194Q5TEA3 1177 aa32.69■■■□□ 2.82
SHOX2-201ENST00000389589 CT47B1P0C2W7 299 aaPredicted RBP32.68■■■□□ 2.82
SHOX2-201ENST00000389589 NFE2L2Q16236 605 aa32.68■■■□□ 2.82
SHOX2-201ENST00000389589 MARF1Q9Y4F3 1742 aaKnown RBP32.68■■■□□ 2.82
SHOX2-201ENST00000389589 EIF4A2Q14240 407 aaKnown RBP32.66■■■□□ 2.82
SHOX2-201ENST00000389589 RGPD1P0DJD0 1748 aa32.65■■■□□ 2.82
SHOX2-201ENST00000389589 DLG5Q8TDM6 1919 aa32.65■■■□□ 2.82
SHOX2-201ENST00000389589 FANCIQ9NVI1 1328 aa32.64■■■□□ 2.82
SHOX2-201ENST00000389589 SBNO1A3KN83 1393 aa32.64■■■□□ 2.82
SHOX2-201ENST00000389589 RARSP54136 660 aaKnown RBP32.64■■■□□ 2.82
SHOX2-201ENST00000389589 PHACTR3Q96KR7 559 aa32.64■■■□□ 2.82
SHOX2-201ENST00000389589 C14orf37Q86TY3 774 aa32.63■■■□□ 2.81
SHOX2-201ENST00000389589 NLRP6P59044 892 aa32.63■■■□□ 2.81
SHOX2-201ENST00000389589 RBM33Q96EV2 1170 aaKnown RBP32.63■■■□□ 2.81
SHOX2-201ENST00000389589 FLT4P35916 1363 aa32.63■■■□□ 2.81
SHOX2-201ENST00000389589 MAP3K19Q56UN5 1328 aa32.62■■■□□ 2.81
SHOX2-201ENST00000389589 CALD1Q05682 793 aaKnown RBP32.62■■■□□ 2.81
SHOX2-201ENST00000389589 PDE3AQ14432 1141 aa32.62■■■□□ 2.81
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms