RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 USP6P35125 1406 aa18.74■□□□□ 0.59
VPS28-202ENST00000377348 SLC12A5Q9H2X9 1139 aa18.73■□□□□ 0.59
VPS28-202ENST00000377348 SLC24A1O60721 1099 aa18.72■□□□□ 0.59
VPS28-202ENST00000377348 PUS7Q96PZ0 661 aaKnown RBP18.72■□□□□ 0.59
VPS28-202ENST00000377348 CD163L1Q9NR16 1453 aa18.71■□□□□ 0.59
VPS28-202ENST00000377348 HAP1P54257 671 aaPredicted RBP18.71■□□□□ 0.59
VPS28-202ENST00000377348 ILDR2Q71H61 639 aa18.71■□□□□ 0.59
VPS28-202ENST00000377348 CPSF1Q10570 1443 aaKnown RBP18.71■□□□□ 0.59
VPS28-202ENST00000377348 SSH2Q76I76 1423 aa18.7■□□□□ 0.58
VPS28-202ENST00000377348 ABTB2Q8N961 1025 aa18.7■□□□□ 0.58
VPS28-202ENST00000377348 AFF2P51816 1311 aa18.7■□□□□ 0.58
VPS28-202ENST00000377348 KTN1Q86UP2 1357 aaKnown RBP18.69■□□□□ 0.58
VPS28-202ENST00000377348 ABCA3Q99758 1704 aa18.69■□□□□ 0.58
VPS28-202ENST00000377348 AKAP12Q02952 1782 aa18.69■□□□□ 0.58
VPS28-202ENST00000377348 POTEAQ6S8J7 498 aa18.69■□□□□ 0.58
VPS28-202ENST00000377348 NGLY1Q96IV0 654 aa18.69■□□□□ 0.58
VPS28-202ENST00000377348 ZNF692Q9BU19 519 aaPredicted RBP18.69■□□□□ 0.58
VPS28-202ENST00000377348 TTC21BQ7Z4L5 1316 aa18.68■□□□□ 0.58
VPS28-202ENST00000377348 A0A1W2PP64 1363 aa18.68■□□□□ 0.58
VPS28-202ENST00000377348 BRD4O60885 1362 aaPredicted RBP18.67■□□□□ 0.58
VPS28-202ENST00000377348 CRYBG1Q9Y4K1 1723 aa18.66■□□□□ 0.58
VPS28-202ENST00000377348 CDCA8Q53HL2 280 aa18.66■□□□□ 0.58
VPS28-202ENST00000377348 HDGFL2Q7Z4V5 671 aaPredicted RBP18.66■□□□□ 0.58
VPS28-202ENST00000377348 NRKQ7Z2Y5 1582 aa18.65■□□□□ 0.58
VPS28-202ENST00000377348 ZNF772Q68DY9 489 aaPredicted RBP18.65■□□□□ 0.58
VPS28-202ENST00000377348 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.65■□□□□ 0.58
VPS28-202ENST00000377348 POLR3GLQ9BT43 218 aa18.65■□□□□ 0.58
VPS28-202ENST00000377348 TERF2IPQ9NYB0 399 aa18.65■□□□□ 0.58
VPS28-202ENST00000377348 MON2Q7Z3U7 1717 aa18.65■□□□□ 0.58
VPS28-202ENST00000377348 MARF1Q9Y4F3 1742 aaKnown RBP18.65■□□□□ 0.58
VPS28-202ENST00000377348 NINLQ9Y2I6 1382 aa18.64■□□□□ 0.57
VPS28-202ENST00000377348 PIK3C2AO00443 1686 aa18.63■□□□□ 0.57
VPS28-202ENST00000377348 NLRP6P59044 892 aa18.63■□□□□ 0.57
VPS28-202ENST00000377348 NLRP13Q86W25 1043 aa18.63■□□□□ 0.57
VPS28-202ENST00000377348 FNBP4Q8N3X1 1017 aaPredicted RBP18.63■□□□□ 0.57
VPS28-202ENST00000377348 USP19O94966 1318 aa18.63■□□□□ 0.57
VPS28-202ENST00000377348 PHRF1Q9P1Y6 1649 aaKnown RBP18.63■□□□□ 0.57
VPS28-202ENST00000377348 USP21Q9UK80 565 aa18.62■□□□□ 0.57
VPS28-202ENST00000377348 ANKRD36BQ8N2N9 1353 aa18.61■□□□□ 0.57
VPS28-202ENST00000377348 TTC21AQ8NDW8 1320 aa18.61■□□□□ 0.57
VPS28-202ENST00000377348 FAM83GA6ND36 823 aa18.61■□□□□ 0.57
VPS28-202ENST00000377348 C11orf95C9JLR9 678 aaPredicted RBP18.61■□□□□ 0.57
VPS28-202ENST00000377348 ZC3H6P61129 1189 aaKnown RBP18.61■□□□□ 0.57
VPS28-202ENST00000377348 ZRANB1Q9UGI0 708 aa18.61■□□□□ 0.57
VPS28-202ENST00000377348 MYOM1P52179 1685 aa18.6■□□□□ 0.57
VPS28-202ENST00000377348 EDC4Q6P2E9 1401 aaKnown RBP18.6■□□□□ 0.57
VPS28-202ENST00000377348 NME9Q86XW9 330 aa18.6■□□□□ 0.57
VPS28-202ENST00000377348 SLIT2O94813 1529 aa18.59■□□□□ 0.57
VPS28-202ENST00000377348 BCL9LQ86UU0 1499 aa18.59■□□□□ 0.57
VPS28-202ENST00000377348 KIAA0232Q92628 1395 aa18.59■□□□□ 0.57
VPS28-202ENST00000377348 GCP02774 474 aa18.59■□□□□ 0.57
VPS28-202ENST00000377348 QTRT2Q9H974 415 aaKnown RBP18.59■□□□□ 0.57
VPS28-202ENST00000377348 CHRNA2Q15822 529 aa18.58■□□□□ 0.56
VPS28-202ENST00000377348 PRDM11Q9NQV5 511 aa18.58■□□□□ 0.56
VPS28-202ENST00000377348 SOX12O15370 315 aa18.57■□□□□ 0.56
VPS28-202ENST00000377348 SLIT3O75094 1523 aa18.57■□□□□ 0.56
VPS28-202ENST00000377348 PLCH1Q4KWH8 1693 aa18.57■□□□□ 0.56
VPS28-202ENST00000377348 UNC5CLQ8IV45 518 aa18.56■□□□□ 0.56
VPS28-202ENST00000377348 ZBTB7CA1YPR0 619 aa18.55■□□□□ 0.56
VPS28-202ENST00000377348 BTG4Q9NY30 223 aa18.55■□□□□ 0.56
VPS28-202ENST00000377348 TRPC5Q9UL62 973 aaPredicted RBP18.55■□□□□ 0.56
VPS28-202ENST00000377348 ATRNO75882 1429 aa18.55■□□□□ 0.56
VPS28-202ENST00000377348 RXRBP28702 533 aa18.54■□□□□ 0.56
VPS28-202ENST00000377348 CARD14Q9BXL6 1004 aa18.54■□□□□ 0.56
VPS28-202ENST00000377348 COL14A1Q05707 1796 aaKnown RBP18.54■□□□□ 0.56
VPS28-202ENST00000377348 USP31Q70CQ4 1352 aa18.54■□□□□ 0.56
VPS28-202ENST00000377348 KIF7Q2M1P5 1343 aa18.52■□□□□ 0.56
VPS28-202ENST00000377348 RBM6P78332 1123 aaKnown RBP18.52■□□□□ 0.56
VPS28-202ENST00000377348 CPDO75976 1380 aa18.52■□□□□ 0.55
VPS28-202ENST00000377348 NWD2Q9ULI1 1742 aa18.52■□□□□ 0.55
VPS28-202ENST00000377348 OVOS2A0A0J9YW53 1432 aa18.51■□□□□ 0.55
VPS28-202ENST00000377348 OVOS2Q6IE36 1432 aa18.51■□□□□ 0.55
VPS28-202ENST00000377348 NSD3Q9BZ95 1437 aa18.51■□□□□ 0.55
VPS28-202ENST00000377348 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.51■□□□□ 0.55
VPS28-202ENST00000377348 NRAPQ86VF7 1730 aa18.5■□□□□ 0.55
VPS28-202ENST00000377348 KCNH5Q8NCM2 988 aa18.5■□□□□ 0.55
VPS28-202ENST00000377348 USP54Q70EL1 1684 aa18.5■□□□□ 0.55
VPS28-202ENST00000377348 NFAT5O94916 1531 aa18.49■□□□□ 0.55
VPS28-202ENST00000377348 FYB1O15117 783 aa18.49■□□□□ 0.55
VPS28-202ENST00000377348 GGNBP2Q9H3C7 697 aa18.49■□□□□ 0.55
VPS28-202ENST00000377348 PANK3Q9H999 370 aa18.49■□□□□ 0.55
VPS28-202ENST00000377348 CAMTA1Q9Y6Y1 1673 aa18.48■□□□□ 0.55
VPS28-202ENST00000377348 VPS72Q15906 364 aa18.48■□□□□ 0.55
VPS28-202ENST00000377348 ARHGEF25Q86VW2 580 aa18.48■□□□□ 0.55
VPS28-202ENST00000377348 COG3Q96JB2 828 aa18.48■□□□□ 0.55
VPS28-202ENST00000377348 GJD4Q96KN9 370 aaPredicted RBP18.48■□□□□ 0.55
VPS28-202ENST00000377348 CCDC9Q9Y3X0 531 aaKnown RBP18.48■□□□□ 0.55
VPS28-202ENST00000377348 LMO7Q8WWI1 1683 aa18.47■□□□□ 0.55
VPS28-202ENST00000377348 STRN4Q9NRL3 753 aa18.47■□□□□ 0.55
VPS28-202ENST00000377348 RGS12O14924 1447 aa18.47■□□□□ 0.55
VPS28-202ENST00000377348 GLI3P10071 1580 aa18.47■□□□□ 0.55
VPS28-202ENST00000377348 FBLN1P23142 703 aa18.46■□□□□ 0.55
VPS28-202ENST00000377348 AATKQ6ZMQ8 1374 aa18.45■□□□□ 0.54
VPS28-202ENST00000377348 CCDC7Q96M83 1385 aa18.45■□□□□ 0.54
VPS28-202ENST00000377348 AXIN2Q9Y2T1 843 aa18.45■□□□□ 0.54
VPS28-202ENST00000377348 WASHC2AQ641Q2 1341 aa18.45■□□□□ 0.54
VPS28-202ENST00000377348 CDK12Q9NYV4 1490 aaPredicted RBP18.44■□□□□ 0.54
VPS28-202ENST00000377348 KIF20BQ96Q89 1820 aa18.44■□□□□ 0.54
VPS28-202ENST00000377348 COL18A1P39060 1754 aa18.43■□□□□ 0.54
VPS28-202ENST00000377348 EVA1CP58658 441 aa18.43■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 108.4 ms