RNA–Protein interactions for RNA: ENST00000377047.8

GPC6-201, Transcript of glypican 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GPC6, Length 6,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC6-201ENST00000377047 ERBINQ96RT1 1412 aa16.48■□□□□ 0.23
GPC6-201ENST00000377047 ZNF530Q6P9A1 599 aaPredicted RBP16.48■□□□□ 0.23
GPC6-201ENST00000377047 CCAR2Q8N163 923 aaKnown RBP16.48■□□□□ 0.23
GPC6-201ENST00000377047 PRDM11Q9NQV5 511 aa16.48■□□□□ 0.23
GPC6-201ENST00000377047 ARAP1Q96P48 1450 aa16.48■□□□□ 0.23
GPC6-201ENST00000377047 TWISTNBQ3B726 338 aaPredicted RBP16.48■□□□□ 0.23
GPC6-201ENST00000377047 TROQ12816 1431 aaPredicted RBP16.47■□□□□ 0.23
GPC6-201ENST00000377047 BRD4O60885 1362 aaPredicted RBP16.47■□□□□ 0.23
GPC6-201ENST00000377047 EXOSC9Q06265 439 aaKnown RBP16.47■□□□□ 0.23
GPC6-201ENST00000377047 POLA1P09884 1462 aaPredicted RBP16.47■□□□□ 0.23
GPC6-201ENST00000377047 BRMS1Q9HCU9 246 aa16.47■□□□□ 0.23
GPC6-201ENST00000377047 TTC39AQ5SRH9 613 aa16.46■□□□□ 0.23
GPC6-201ENST00000377047 HDGFL1Q5TGJ6 251 aa16.46■□□□□ 0.23
GPC6-201ENST00000377047 KIAA1107Q9UPP5 1409 aa16.46■□□□□ 0.22
GPC6-201ENST00000377047 MYL6BP14649 208 aa16.45■□□□□ 0.22
GPC6-201ENST00000377047 CDC45O75419 566 aa16.45■□□□□ 0.22
GPC6-201ENST00000377047 IPO7O95373 1038 aaKnown RBP16.44■□□□□ 0.22
GPC6-201ENST00000377047 SLC4A2P04920 1241 aa16.44■□□□□ 0.22
GPC6-201ENST00000377047 C1orf115Q9H7X2 142 aa16.44■□□□□ 0.22
GPC6-201ENST00000377047 XBP1P17861 261 aa16.44■□□□□ 0.22
GPC6-201ENST00000377047 SART3Q15020 963 aaKnown RBP16.44■□□□□ 0.22
GPC6-201ENST00000377047 GNL3LQ9NVN8 582 aaKnown RBP16.43■□□□□ 0.22
GPC6-201ENST00000377047 RRP12Q5JTH9 1297 aaKnown RBP16.43■□□□□ 0.22
GPC6-201ENST00000377047 PSMA5P28066 241 aa16.43■□□□□ 0.22
GPC6-201ENST00000377047 CCAR1Q8IX12 1150 aaKnown RBP16.43■□□□□ 0.22
GPC6-201ENST00000377047 TSR2Q969E8 191 aaKnown RBP16.43■□□□□ 0.22
GPC6-201ENST00000377047 SLC3A2P08195 630 aaKnown RBP16.43■□□□□ 0.22
GPC6-201ENST00000377047 CCDC158Q5M9N0 1113 aa16.43■□□□□ 0.22
GPC6-201ENST00000377047 RRS1Q15050 365 aaKnown RBP16.42■□□□□ 0.22
GPC6-201ENST00000377047 PNISRQ8TF01 805 aaKnown RBP16.42■□□□□ 0.22
GPC6-201ENST00000377047 GNAI2P04899 355 aa16.42■□□□□ 0.22
GPC6-201ENST00000377047 C22orf23Q9BZE7 217 aa16.42■□□□□ 0.22
GPC6-201ENST00000377047 ERC1Q8IUD2 1116 aa16.41■□□□□ 0.22
GPC6-201ENST00000377047 ZC3H6P61129 1189 aaKnown RBP16.41■□□□□ 0.22
GPC6-201ENST00000377047 KRI1Q8N9T8 703 aaKnown RBP16.41■□□□□ 0.22
GPC6-201ENST00000377047 AAMPQ13685 434 aa16.41■□□□□ 0.22
GPC6-201ENST00000377047 CCDC73Q6ZRK6 1079 aa16.41■□□□□ 0.22
GPC6-201ENST00000377047 NOB1Q9ULX3 412 aaKnown RBP16.41■□□□□ 0.22
GPC6-201ENST00000377047 SIL1Q9H173 461 aa16.41■□□□□ 0.22
GPC6-201ENST00000377047 CDCA7LQ96GN5 454 aa16.41■□□□□ 0.22
GPC6-201ENST00000377047 SASS6Q6UVJ0 657 aa16.4■□□□□ 0.22
GPC6-201ENST00000377047 CCDC70Q6NSX1 233 aa16.4■□□□□ 0.22
GPC6-201ENST00000377047 RPGRIP1LQ68CZ1 1315 aa16.4■□□□□ 0.22
GPC6-201ENST00000377047 ATP2B2Q01814 1243 aa16.4■□□□□ 0.22
GPC6-201ENST00000377047 DNMBPQ6XZF7 1577 aa16.39■□□□□ 0.21
GPC6-201ENST00000377047 ZNF592Q92610 1267 aa16.39■□□□□ 0.21
GPC6-201ENST00000377047 R3HCC1Q9Y3T6 440 aaKnown RBP16.39■□□□□ 0.21
GPC6-201ENST00000377047 CHMP5Q9NZZ3 219 aa16.39■□□□□ 0.21
GPC6-201ENST00000377047 DAPK1P53355 1430 aa16.39■□□□□ 0.21
GPC6-201ENST00000377047 BTBD11A6QL63 1104 aa16.39■□□□□ 0.21
GPC6-201ENST00000377047 STK11IPQ8N1F8 1099 aa16.39■□□□□ 0.21
GPC6-201ENST00000377047 TOP2BQ02880 1626 aa16.38■□□□□ 0.21
GPC6-201ENST00000377047 SUPT6HQ7KZ85 1726 aaKnown RBP16.38■□□□□ 0.21
GPC6-201ENST00000377047 HMGXB3Q12766 1538 aa16.38■□□□□ 0.21
GPC6-201ENST00000377047 RBM5P52756 815 aaKnown RBP eCLIP16.38■□□□□ 0.21
GPC6-201ENST00000377047 MPHOSPH8Q99549 860 aa16.38■□□□□ 0.21
GPC6-201ENST00000377047 NUCB2P80303 420 aa16.38■□□□□ 0.21
GPC6-201ENST00000377047 HIP1O00291 1037 aa16.37■□□□□ 0.21
GPC6-201ENST00000377047 BICDL1Q6ZP65 573 aa16.37■□□□□ 0.21
GPC6-201ENST00000377047 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.37■□□□□ 0.21
GPC6-201ENST00000377047 CDK13Q14004 1512 aaKnown RBP16.37■□□□□ 0.21
GPC6-201ENST00000377047 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.37■□□□□ 0.21
GPC6-201ENST00000377047 TMEM132AQ24JP5 1023 aa16.36■□□□□ 0.21
GPC6-201ENST00000377047 CCDC57Q2TAC2 916 aa16.36■□□□□ 0.21
GPC6-201ENST00000377047 NUDT16Q96DE0 195 aaKnown RBP16.36■□□□□ 0.21
GPC6-201ENST00000377047 EPS15P42566 896 aa16.36■□□□□ 0.21
GPC6-201ENST00000377047 CCT4P50991 539 aaKnown RBP16.36■□□□□ 0.21
GPC6-201ENST00000377047 SRCIN1Q9C0H9 1055 aa16.36■□□□□ 0.21
GPC6-201ENST00000377047 ATP2B1P20020 1258 aa16.36■□□□□ 0.21
GPC6-201ENST00000377047 ATAD2Q6PL18 1390 aa16.35■□□□□ 0.21
GPC6-201ENST00000377047 CD109Q6YHK3 1445 aa16.35■□□□□ 0.21
GPC6-201ENST00000377047 NBPF8Q3BBV2 869 aa16.35■□□□□ 0.21
GPC6-201ENST00000377047 ANKRD30BQ9BXX2 1392 aa16.35■□□□□ 0.21
GPC6-201ENST00000377047 NAP1L1P55209 391 aaKnown RBP16.34■□□□□ 0.21
GPC6-201ENST00000377047 CT47A1Q5JQC4 288 aaPredicted RBP16.34■□□□□ 0.21
GPC6-201ENST00000377047 ARHGEF11O15085 1522 aa16.33■□□□□ 0.21
GPC6-201ENST00000377047 HOMER1Q86YM7 354 aa16.33■□□□□ 0.21
GPC6-201ENST00000377047 OLFM4Q6UX06 510 aa16.33■□□□□ 0.2
GPC6-201ENST00000377047 EPRSP07814 1512 aaKnown RBP16.33■□□□□ 0.2
GPC6-201ENST00000377047 MAP4K4O95819 1239 aaPredicted RBP16.33■□□□□ 0.2
GPC6-201ENST00000377047 WAPLQ7Z5K2 1190 aa16.32■□□□□ 0.2
GPC6-201ENST00000377047 CDK5RAP3Q96JB5 506 aa16.32■□□□□ 0.2
GPC6-201ENST00000377047 KIAA0586Q9BVV6 1533 aa16.31■□□□□ 0.2
GPC6-201ENST00000377047 ODF2Q5BJF6 829 aa16.31■□□□□ 0.2
GPC6-201ENST00000377047 KCNH5Q8NCM2 988 aa16.31■□□□□ 0.2
GPC6-201ENST00000377047 GCC1Q96CN9 775 aa16.31■□□□□ 0.2
GPC6-201ENST00000377047 LRRCC1Q9C099 1032 aa16.31■□□□□ 0.2
GPC6-201ENST00000377047 PDZRN3Q9UPQ7 1066 aa16.31■□□□□ 0.2
GPC6-201ENST00000377047 NACAP1Q9BZK3 213 aa16.31■□□□□ 0.2
GPC6-201ENST00000377047 BCAR3O75815 825 aa16.31■□□□□ 0.2
GPC6-201ENST00000377047 TIAM1Q13009 1591 aa16.31■□□□□ 0.2
GPC6-201ENST00000377047 FKBP4Q02790 459 aaKnown RBP eCLIP16.3■□□□□ 0.2
GPC6-201ENST00000377047 GSE1Q14687 1217 aa16.3■□□□□ 0.2
GPC6-201ENST00000377047 SDF4Q9BRK5 362 aa16.3■□□□□ 0.2
GPC6-201ENST00000377047 FBXO3Q9UK99 471 aa16.3■□□□□ 0.2
GPC6-201ENST00000377047 ADAMTS2O95450 1211 aa16.3■□□□□ 0.2
GPC6-201ENST00000377047 CCDC61Q9Y6R9 512 aa16.3■□□□□ 0.2
GPC6-201ENST00000377047 IQGAP2Q13576 1575 aa16.3■□□□□ 0.2
GPC6-201ENST00000377047 NEK4P51957 841 aa16.29■□□□□ 0.2
GPC6-201ENST00000377047 CCDC85AQ96PX6 553 aaPredicted RBP16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms