RNA–Protein interactions for RNA: ENST00000374730.2

USP48-202, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-202ENST00000374730 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.09□□□□□ -0.95
USP48-202ENST00000374730 ZNF511Q8NB15 262 aa9.08□□□□□ -0.96
USP48-202ENST00000374730 EHBP1Q8NDI1 1231 aa9.08□□□□□ -0.96
USP48-202ENST00000374730 TSC1Q92574 1164 aa9.08□□□□□ -0.96
USP48-202ENST00000374730 MAP10Q9P2G4 905 aa9.08□□□□□ -0.96
USP48-202ENST00000374730 PER1O15534 1290 aaPredicted RBP9.07□□□□□ -0.96
USP48-202ENST00000374730 SMPD1P17405 629 aa9.07□□□□□ -0.96
USP48-202ENST00000374730 NEUROD2Q15784 382 aa9.07□□□□□ -0.96
USP48-202ENST00000374730 CTC1Q2NKJ3 1217 aa9.07□□□□□ -0.96
USP48-202ENST00000374730 PPP2R2DQ66LE6 453 aa9.07□□□□□ -0.96
USP48-202ENST00000374730 BAP1Q92560 729 aa9.07□□□□□ -0.96
USP48-202ENST00000374730 SIAH2O43255 324 aa9.06□□□□□ -0.96
USP48-202ENST00000374730 SMCPP49901 116 aaPredicted RBP9.06□□□□□ -0.96
USP48-202ENST00000374730 LINC01559Q495D7 138 aa9.06□□□□□ -0.96
USP48-202ENST00000374730 TPRNQ4KMQ1 711 aa9.06□□□□□ -0.96
USP48-202ENST00000374730 GOPCQ9HD26 462 aa9.06□□□□□ -0.96
USP48-202ENST00000374730 AAASQ9NRG9 546 aa9.05□□□□□ -0.96
USP48-202ENST00000374730 J3QL48 77 aa9.04□□□□□ -0.96
USP48-202ENST00000374730 VARSP26640 1264 aaKnown RBP9.04□□□□□ -0.96
USP48-202ENST00000374730 PROCA1Q8NCQ7 364 aaPredicted RBP9.04□□□□□ -0.96
USP48-202ENST00000374730 ARMC2Q8NEN0 867 aa9.04□□□□□ -0.96
USP48-202ENST00000374730 ST8SIA5O15466 376 aa9.03□□□□□ -0.96
USP48-202ENST00000374730 BRPF1P55201 1214 aaPredicted RBP9.03□□□□□ -0.96
USP48-202ENST00000374730 MPNDQ8N594 471 aa9.03□□□□□ -0.96
USP48-202ENST00000374730 AXIN1O15169 862 aa9.02□□□□□ -0.97
USP48-202ENST00000374730 ALDH1A1P00352 501 aa9.02□□□□□ -0.97
USP48-202ENST00000374730 FBXO31Q5XUX0 539 aaPredicted RBP9.01□□□□□ -0.97
USP48-202ENST00000374730 ZNF787Q6DD87 383 aa9.01□□□□□ -0.97
USP48-202ENST00000374730 CTDSPL2Q05D32 466 aa9□□□□□ -0.97
USP48-202ENST00000374730 NBPF14Q5TI25 921 aa9□□□□□ -0.97
USP48-202ENST00000374730 GPKOWQ92917 476 aaPredicted RBP eCLIP9□□□□□ -0.972e-10■□□□□ 8.7
USP48-202ENST00000374730 ATP1B4Q9UN42 357 aaPredicted RBP9□□□□□ -0.97
USP48-202ENST00000374730 FAM174AQ8TBP5 190 aa8.99□□□□□ -0.97
USP48-202ENST00000374730 HPS1Q92902 700 aa8.99□□□□□ -0.97
USP48-202ENST00000374730 PCMTD1Q96MG8 357 aaPredicted RBP8.99□□□□□ -0.97
USP48-202ENST00000374730 BPHLQ86WA6 291 aaPredicted RBP8.98□□□□□ -0.97
USP48-202ENST00000374730 FOXJ1Q92949 421 aa8.98□□□□□ -0.97
USP48-202ENST00000374730 TLL2Q9Y6L7 1015 aa8.98□□□□□ -0.97
USP48-202ENST00000374730 WASF2Q9Y6W5 498 aa8.98□□□□□ -0.97
USP48-202ENST00000374730 RFC5P40937 340 aa8.96□□□□□ -0.98
USP48-202ENST00000374730 IL27Q8NEV9 243 aa8.96□□□□□ -0.98
USP48-202ENST00000374730 LRRN4Q8WUT4 740 aa8.96□□□□□ -0.98
USP48-202ENST00000374730 ZC3H4Q9UPT8 1303 aaKnown RBP8.96□□□□□ -0.98
USP48-202ENST00000374730 AP1G2O75843 785 aa8.95□□□□□ -0.98
USP48-202ENST00000374730 AGERQ15109 404 aa8.95□□□□□ -0.98
USP48-202ENST00000374730 C4orf48Q5BLP8 95 aa8.95□□□□□ -0.98
USP48-202ENST00000374730 SH3BP5LQ7L8J4 393 aa8.95□□□□□ -0.98
USP48-202ENST00000374730 SH3RF1Q7Z6J0 888 aa8.95□□□□□ -0.98
USP48-202ENST00000374730 CDK15Q96Q40 435 aa8.95□□□□□ -0.98
USP48-202ENST00000374730 C1QTNF2Q9BXJ5 285 aa8.95□□□□□ -0.98
USP48-202ENST00000374730 USP17L8P0C7I0 530 aa8.94□□□□□ -0.98
USP48-202ENST00000374730 DACH1Q9UI36 760 aa8.94□□□□□ -0.98
USP48-202ENST00000374730 FKBPLQ9UIM3 349 aa8.94□□□□□ -0.98
USP48-202ENST00000374730 ADH1CP00326 375 aa8.93□□□□□ -0.98
USP48-202ENST00000374730 POTECB2RU33 542 aa8.92□□□□□ -0.98
USP48-202ENST00000374730 TMEM259Q4ZIN3 620 aa8.92□□□□□ -0.98
USP48-202ENST00000374730 PDXDC2PQ6P474 469 aa8.92□□□□□ -0.98
USP48-202ENST00000374730 TRMT44Q8IYL2 757 aaKnown RBP8.92□□□□□ -0.98
USP48-202ENST00000374730 ATP13A2Q9NQ11 1180 aa8.92□□□□□ -0.98
USP48-202ENST00000374730 NNTQ13423 1086 aa8.91□□□□□ -0.98
USP48-202ENST00000374730 NR6A1Q15406 480 aa8.91□□□□□ -0.98
USP48-202ENST00000374730 GMPR2Q9P2T1 348 aaKnown RBP8.91□□□□□ -0.98
USP48-202ENST00000374730 MAP4K5Q9Y4K4 846 aa8.91□□□□□ -0.98
USP48-202ENST00000374730 PNMA1Q8ND90 353 aa8.9□□□□□ -0.98
USP48-202ENST00000374730 CAPN5O15484 640 aaPredicted RBP8.89□□□□□ -0.99
USP48-202ENST00000374730 NR5A1Q13285 461 aa8.89□□□□□ -0.99
USP48-202ENST00000374730 SENP2Q9HC62 589 aa8.89□□□□□ -0.99
USP48-202ENST00000374730 HMX1Q9NP08 348 aaPredicted RBP8.89□□□□□ -0.99
USP48-202ENST00000374730 MAGEB6P1A0A0J9YX57 407 aa8.88□□□□□ -0.99
USP48-202ENST00000374730 ARID5BQ14865 1188 aa8.88□□□□□ -0.99
USP48-202ENST00000374730 ARHGAP9Q9BRR9 750 aa8.88□□□□□ -0.99
USP48-202ENST00000374730 GPSM3Q9Y4H4 160 aa8.88□□□□□ -0.99
USP48-202ENST00000374730 ERFEQ4G0M1 354 aa8.87□□□□□ -0.99
USP48-202ENST00000374730 KIFC2Q96AC6 838 aa8.87□□□□□ -0.99
USP48-202ENST00000374730 CARD14Q9BXL6 1004 aa8.87□□□□□ -0.99
USP48-202ENST00000374730 C11orf95C9JLR9 678 aaPredicted RBP8.86□□□□□ -0.99
USP48-202ENST00000374730 TIMP2P16035 220 aa8.86□□□□□ -0.99
USP48-202ENST00000374730 GRM5P41594 1212 aa8.86□□□□□ -0.99
USP48-202ENST00000374730 TRIM47Q96LD4 638 aa8.86□□□□□ -0.99
USP48-202ENST00000374730 KLF16Q9BXK1 252 aaPredicted RBP8.86□□□□□ -0.99
USP48-202ENST00000374730 CDV3Q9UKY7 258 aaKnown RBP8.86□□□□□ -0.99
USP48-202ENST00000374730 SOCS7O14512 581 aa8.85□□□□□ -0.99
USP48-202ENST00000374730 WDR4P57081 412 aaKnown RBP8.85□□□□□ -0.99
USP48-202ENST00000374730 PTK2Q05397 1052 aa8.85□□□□□ -0.99
USP48-202ENST00000374730 VASH1Q7L8A9 365 aaPredicted RBP8.85□□□□□ -0.99
USP48-202ENST00000374730 EPS8L1Q8TE68 723 aa8.85□□□□□ -0.99
USP48-202ENST00000374730 ZNF775Q96BV0 537 aaPredicted RBP8.85□□□□□ -0.99
USP48-202ENST00000374730 FSHRP23945 695 aa8.84□□□□□ -0.99
USP48-202ENST00000374730 ZBTB33Q86T24 672 aa8.84□□□□□ -0.99
USP48-202ENST00000374730 BANK1Q8NDB2 785 aa8.84□□□□□ -0.99
USP48-202ENST00000374730 SLC10A4Q96EP9 437 aa8.84□□□□□ -0.99
USP48-202ENST00000374730 TRIM34Q9BYJ4 488 aa8.84□□□□□ -0.99
USP48-202ENST00000374730 NR3C2P08235 984 aa8.83□□□□□ -1
USP48-202ENST00000374730 TRIM46Q7Z4K8 759 aa8.83□□□□□ -1
USP48-202ENST00000374730 OCSTAMPQ9BR26 566 aa8.83□□□□□ -1
USP48-202ENST00000374730 BMP1P13497 986 aa8.82□□□□□ -1
USP48-202ENST00000374730 ZIC2O95409 532 aaPredicted RBP8.81□□□□□ -1
USP48-202ENST00000374730 PRKCSHP14314 528 aaPredicted RBP8.81□□□□□ -1
USP48-202ENST00000374730 GJD4Q96KN9 370 aaPredicted RBP8.81□□□□□ -1
USP48-202ENST00000374730 MRPL14Q6P1L8 145 aaKnown RBP8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 175.8 ms