RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 APPP05067 770 aa10.46□□□□□ -0.73
HMGB1-203ENST00000341423 ATP6V1AP38606 617 aa10.46□□□□□ -0.73
HMGB1-203ENST00000341423 HOOK2Q96ED9 719 aa10.46□□□□□ -0.73
HMGB1-203ENST00000341423 SYNE3Q6ZMZ3 975 aa10.46□□□□□ -0.74
HMGB1-203ENST00000341423 WDR62O43379 1518 aa10.46□□□□□ -0.74
HMGB1-203ENST00000341423 FRAT1Q92837 279 aaPredicted RBP10.46□□□□□ -0.74
HMGB1-203ENST00000341423 MPHOSPH9Q99550 1183 aa10.46□□□□□ -0.74
HMGB1-203ENST00000341423 SLC3A2P08195 630 aaKnown RBP10.45□□□□□ -0.74
HMGB1-203ENST00000341423 PPP4R2Q9NY27 417 aa10.45□□□□□ -0.74
HMGB1-203ENST00000341423 HSP90AB3PQ58FF7 597 aa10.45□□□□□ -0.74
HMGB1-203ENST00000341423 SEPT12Q8IYM1 358 aa10.45□□□□□ -0.74
HMGB1-203ENST00000341423 LARGE2Q8N3Y3 721 aa10.45□□□□□ -0.74
HMGB1-203ENST00000341423 TNNI2P48788 182 aa10.45□□□□□ -0.74
HMGB1-203ENST00000341423 SLF2Q8IX21 1173 aa10.45□□□□□ -0.74
HMGB1-203ENST00000341423 TCP11L2Q8N4U5 519 aa10.45□□□□□ -0.74
HMGB1-203ENST00000341423 SUPT20HQ8NEM7 779 aa10.45□□□□□ -0.74
HMGB1-203ENST00000341423 MYOM3Q5VTT5 1437 aa10.44□□□□□ -0.74
HMGB1-203ENST00000341423 ZNF335Q9H4Z2 1342 aaPredicted RBP10.44□□□□□ -0.74
HMGB1-203ENST00000341423 POLA1P09884 1462 aaPredicted RBP10.44□□□□□ -0.74
HMGB1-203ENST00000341423 PLCD3Q8N3E9 789 aa10.44□□□□□ -0.74
HMGB1-203ENST00000341423 NOD1Q9Y239 953 aa10.44□□□□□ -0.74
HMGB1-203ENST00000341423 IGF1RP08069 1367 aa10.44□□□□□ -0.74
HMGB1-203ENST00000341423 ECM2O94769 699 aaPredicted RBP10.44□□□□□ -0.74
HMGB1-203ENST00000341423 NIM1KQ8IY84 436 aa10.44□□□□□ -0.74
HMGB1-203ENST00000341423 PNISRQ8TF01 805 aaKnown RBP10.44□□□□□ -0.74
HMGB1-203ENST00000341423 CCDC34Q96HJ3 373 aa10.44□□□□□ -0.74
HMGB1-203ENST00000341423 SCLT1Q96NL6 688 aa10.43□□□□□ -0.74
HMGB1-203ENST00000341423 GRIN2AQ12879 1464 aa10.43□□□□□ -0.74
HMGB1-203ENST00000341423 ZBTB24O43167 697 aaPredicted RBP10.43□□□□□ -0.74
HMGB1-203ENST00000341423 SULF1Q8IWU6 871 aa10.43□□□□□ -0.74
HMGB1-203ENST00000341423 GNPATO15228 680 aa10.43□□□□□ -0.74
HMGB1-203ENST00000341423 DIAPH1O60610 1272 aaKnown RBP10.43□□□□□ -0.74
HMGB1-203ENST00000341423 NCLP19338 710 aaKnown RBP10.43□□□□□ -0.74
HMGB1-203ENST00000341423 ECE1P42892 770 aa10.43□□□□□ -0.74
HMGB1-203ENST00000341423 DCPSQ96C86 337 aaKnown RBP10.43□□□□□ -0.74
HMGB1-203ENST00000341423 TBC1D2BQ9UPU7 963 aa10.42□□□□□ -0.74
HMGB1-203ENST00000341423 JCADQ9P266 1359 aa10.42□□□□□ -0.74
HMGB1-203ENST00000341423 IVNS1ABPQ9Y6Y0 642 aa10.42□□□□□ -0.74
HMGB1-203ENST00000341423 RPRD2Q5VT52 1461 aaKnown RBP10.42□□□□□ -0.74
HMGB1-203ENST00000341423 IL2RBP14784 551 aa10.41□□□□□ -0.74
HMGB1-203ENST00000341423 BRDTQ58F21 947 aaPredicted RBP10.41□□□□□ -0.74
HMGB1-203ENST00000341423 ZC3H12CQ9C0D7 883 aaKnown RBP10.41□□□□□ -0.74
HMGB1-203ENST00000341423 BMS1Q14692 1282 aaKnown RBP10.41□□□□□ -0.74
HMGB1-203ENST00000341423 ZMYM3Q14202 1370 aa10.41□□□□□ -0.74
HMGB1-203ENST00000341423 PPP1R42Q7Z4L9 355 aa10.41□□□□□ -0.74
HMGB1-203ENST00000341423 ADRA2BP18089 450 aa10.41□□□□□ -0.74
HMGB1-203ENST00000341423 KCNA4P22459 653 aa10.41□□□□□ -0.74
HMGB1-203ENST00000341423 SART3Q15020 963 aaKnown RBP10.41□□□□□ -0.74
HMGB1-203ENST00000341423 TPTE2Q6XPS3 522 aa10.41□□□□□ -0.74
HMGB1-203ENST00000341423 ZBTB33Q86T24 672 aa10.41□□□□□ -0.74
HMGB1-203ENST00000341423 ZCRB1Q8TBF4 217 aaKnown RBP10.41□□□□□ -0.74
HMGB1-203ENST00000341423 TSPYL4Q9UJ04 414 aa10.41□□□□□ -0.74
HMGB1-203ENST00000341423 CCDC85CA6NKD9 419 aa10.4□□□□□ -0.74
HMGB1-203ENST00000341423 NUDT16Q96DE0 195 aaKnown RBP10.4□□□□□ -0.74
HMGB1-203ENST00000341423 TSPYL2Q9H2G4 693 aaPredicted RBP10.4□□□□□ -0.74
HMGB1-203ENST00000341423 IQCA1LA6NCM1 817 aa10.4□□□□□ -0.74
HMGB1-203ENST00000341423 ZBTB7AO95365 584 aa10.4□□□□□ -0.74
HMGB1-203ENST00000341423 B4DLN1 442 aa10.4□□□□□ -0.75
HMGB1-203ENST00000341423 MRPL12P52815 198 aaKnown RBP10.4□□□□□ -0.75
HMGB1-203ENST00000341423 SPATA31A6Q5VVP1 1343 aa10.4□□□□□ -0.75
HMGB1-203ENST00000341423 SPC25Q9HBM1 224 aa10.39□□□□□ -0.75
HMGB1-203ENST00000341423 CABLES1Q8TDN4 633 aa10.39□□□□□ -0.75
HMGB1-203ENST00000341423 MCCP23508 829 aa10.39□□□□□ -0.75
HMGB1-203ENST00000341423 NLGN1Q8N2Q7 840 aa10.39□□□□□ -0.75
HMGB1-203ENST00000341423 NYXQ9GZU5 481 aa10.39□□□□□ -0.75
HMGB1-203ENST00000341423 ERICH2A1L162 156 aa10.38□□□□□ -0.75
HMGB1-203ENST00000341423 NECTIN2Q92692 538 aa10.38□□□□□ -0.75
HMGB1-203ENST00000341423 DNMBPQ6XZF7 1577 aa10.38□□□□□ -0.75
HMGB1-203ENST00000341423 MSL1Q68DK7 614 aa10.38□□□□□ -0.75
HMGB1-203ENST00000341423 DRC1Q96MC2 740 aa10.38□□□□□ -0.75
HMGB1-203ENST00000341423 VEZTQ9HBM0 779 aa10.38□□□□□ -0.75
HMGB1-203ENST00000341423 NCOA2Q15596 1464 aa10.38□□□□□ -0.75
HMGB1-203ENST00000341423 G3BP1Q13283 466 aaKnown RBP eCLIP10.38□□□□□ -0.75
HMGB1-203ENST00000341423 AMOTQ4VCS5 1084 aa10.38□□□□□ -0.75
HMGB1-203ENST00000341423 NLRP3Q96P20 1036 aa10.38□□□□□ -0.75
HMGB1-203ENST00000341423 LRRFIP2Q9Y608 721 aaKnown RBP10.38□□□□□ -0.75
HMGB1-203ENST00000341423 DDX10Q13206 875 aaKnown RBP10.38□□□□□ -0.75
HMGB1-203ENST00000341423 RRBP1Q9P2E9 1410 aaKnown RBP10.38□□□□□ -0.75
HMGB1-203ENST00000341423 IFNL2Q8IZJ0 200 aa10.37□□□□□ -0.75
HMGB1-203ENST00000341423 XPO5Q9HAV4 1204 aaKnown RBP eCLIP10.37□□□□□ -0.75
HMGB1-203ENST00000341423 CHAF1AQ13111 956 aaPredicted RBP10.37□□□□□ -0.75
HMGB1-203ENST00000341423 CAVIN4Q5BKX8 364 aa10.37□□□□□ -0.75
HMGB1-203ENST00000341423 CEP89Q96ST8 783 aa10.37□□□□□ -0.75
HMGB1-203ENST00000341423 CABP5Q9NP86 173 aa10.37□□□□□ -0.75
HMGB1-203ENST00000341423 ARHGEF10O15013 1369 aa10.37□□□□□ -0.75
HMGB1-203ENST00000341423 GLRX3O76003 335 aaKnown RBP10.37□□□□□ -0.75
HMGB1-203ENST00000341423 IDI1Q13907 227 aa10.37□□□□□ -0.75
HMGB1-203ENST00000341423 C2orf69Q8N8R5 385 aa10.37□□□□□ -0.75
HMGB1-203ENST00000341423 LBHD1Q9BQE6 289 aaPredicted RBP10.37□□□□□ -0.75
HMGB1-203ENST00000341423 ZNF608Q9ULD9 1512 aaPredicted RBP10.37□□□□□ -0.75
HMGB1-203ENST00000341423 CCDC152Q4G0S7 254 aa10.37□□□□□ -0.75
HMGB1-203ENST00000341423 NEUROD6Q96NK8 337 aa10.37□□□□□ -0.75
HMGB1-203ENST00000341423 WASHC4Q2M389 1173 aa10.37□□□□□ -0.75
HMGB1-203ENST00000341423 DALRD3Q5D0E6 543 aaKnown RBP10.36□□□□□ -0.75
HMGB1-203ENST00000341423 UNC5CLQ8IV45 518 aa10.36□□□□□ -0.75
HMGB1-203ENST00000341423 SLC5A4Q9NY91 659 aa10.36□□□□□ -0.75
HMGB1-203ENST00000341423 TBX22Q9Y458 520 aa10.36□□□□□ -0.75
HMGB1-203ENST00000341423 ARHGEF11O15085 1522 aa10.36□□□□□ -0.75
HMGB1-203ENST00000341423 TRDNQ13061 729 aa10.36□□□□□ -0.75
HMGB1-203ENST00000341423 TNS4Q8IZW8 715 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms