RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 SSH2Q76I76 1423 aa3.08□□□□□ -1.92
LINC00643-201ENST00000334389 XP32Q5T750 250 aa3.08□□□□□ -1.92
LINC00643-201ENST00000334389 DHX57Q6P158 1386 aaKnown RBP3.08□□□□□ -1.92
LINC00643-201ENST00000334389 SNPHO15079 494 aa3.08□□□□□ -1.92
LINC00643-201ENST00000334389 KCNA6P17658 529 aa3.08□□□□□ -1.92
LINC00643-201ENST00000334389 RGS19P49795 217 aa3.08□□□□□ -1.92
LINC00643-201ENST00000334389 EIF3AQ14152 1382 aaKnown RBP3.07□□□□□ -1.92
LINC00643-201ENST00000334389 MON2Q7Z3U7 1717 aa3.07□□□□□ -1.92
LINC00643-201ENST00000334389 DDX60Q8IY21 1712 aaKnown RBP3.07□□□□□ -1.92
LINC00643-201ENST00000334389 COL5A3P25940 1745 aaPredicted RBP3.07□□□□□ -1.92
LINC00643-201ENST00000334389 COL5A2P05997 1499 aaPredicted RBP3.06□□□□□ -1.92
LINC00643-201ENST00000334389 LRPPRCP42704 1394 aaKnown RBP3.06□□□□□ -1.92
LINC00643-201ENST00000334389 THEMISQ8N1K5 641 aaPredicted RBP3.06□□□□□ -1.92
LINC00643-201ENST00000334389 KCPQ6ZWJ8 1503 aa3.05□□□□□ -1.92
LINC00643-201ENST00000334389 KIF15Q9NS87 1388 aa3.05□□□□□ -1.92
LINC00643-201ENST00000334389 SOS2Q07890 1332 aaPredicted RBP3.05□□□□□ -1.92
LINC00643-201ENST00000334389 OVOS2A0A0J9YW53 1432 aa3.05□□□□□ -1.92
LINC00643-201ENST00000334389 OVOS2Q6IE36 1432 aa3.05□□□□□ -1.92
LINC00643-201ENST00000334389 RIMS2Q9UQ26 1411 aa3.05□□□□□ -1.92
LINC00643-201ENST00000334389 METRNQ9UJH8 293 aa3.04□□□□□ -1.92
LINC00643-201ENST00000334389 TBX22Q9Y458 520 aa3.04□□□□□ -1.92
LINC00643-201ENST00000334389 JMYQ8N9B5 988 aa3.04□□□□□ -1.92
LINC00643-201ENST00000334389 RBM6P78332 1123 aaKnown RBP3.04□□□□□ -1.92
LINC00643-201ENST00000334389 SCN4AP35499 1836 aa3.04□□□□□ -1.92
LINC00643-201ENST00000334389 KDM6AO15550 1401 aaPredicted RBP3.04□□□□□ -1.92
LINC00643-201ENST00000334389 POTEJP0CG39 1038 aa3.03□□□□□ -1.92
LINC00643-201ENST00000334389 MSH6P52701 1360 aa3.03□□□□□ -1.92
LINC00643-201ENST00000334389 MYOM3Q5VTT5 1437 aa3.03□□□□□ -1.92
LINC00643-201ENST00000334389 TIAM2Q8IVF5 1701 aa3.03□□□□□ -1.92
LINC00643-201ENST00000334389 CDK11AQ9UQ88 783 aaPredicted RBP3.03□□□□□ -1.92
LINC00643-201ENST00000334389 OVOS2A0A0G2JMS6 1433 aa3.03□□□□□ -1.92
LINC00643-201ENST00000334389 PIK3C2GO75747 1445 aa3.02□□□□□ -1.93
LINC00643-201ENST00000334389 NAIPQ13075 1403 aa3.02□□□□□ -1.93
LINC00643-201ENST00000334389 ANKLE2Q86XL3 938 aa3.02□□□□□ -1.93
LINC00643-201ENST00000334389 CPDO75976 1380 aa3.02□□□□□ -1.93
LINC00643-201ENST00000334389 HSPA1LP34931 641 aa3.02□□□□□ -1.93
LINC00643-201ENST00000334389 TOGARAM1Q9Y4F4 1720 aa3.02□□□□□ -1.93
LINC00643-201ENST00000334389 NCAPD2Q15021 1401 aa3.01□□□□□ -1.93
LINC00643-201ENST00000334389 NSD2O96028 1365 aa3.01□□□□□ -1.93
LINC00643-201ENST00000334389 ZNF609O15014 1411 aa3.01□□□□□ -1.93
LINC00643-201ENST00000334389 ABCF1Q8NE71 845 aaKnown RBP eCLIP3.01□□□□□ -1.93
LINC00643-201ENST00000334389 FARP1Q9Y4F1 1045 aaPredicted RBP3.01□□□□□ -1.93
LINC00643-201ENST00000334389 MAP2P11137 1827 aaKnown RBP3.01□□□□□ -1.93
LINC00643-201ENST00000334389 SLC52A1Q9NWF4 448 aa3□□□□□ -1.93
LINC00643-201ENST00000334389 MEGF6O75095 1541 aa3□□□□□ -1.93
LINC00643-201ENST00000334389 RPGRIP1LQ68CZ1 1315 aa3□□□□□ -1.93
LINC00643-201ENST00000334389 PRELPP51888 382 aa3□□□□□ -1.93
LINC00643-201ENST00000334389 DAPK1P53355 1430 aa3□□□□□ -1.93
LINC00643-201ENST00000334389 ST18O60284 1047 aa2.99□□□□□ -1.93
LINC00643-201ENST00000334389 STAC3Q96MF2 364 aa2.99□□□□□ -1.93
LINC00643-201ENST00000334389 UBR3Q6ZT12 1888 aa2.99□□□□□ -1.93
LINC00643-201ENST00000334389 LOC100996750A0A140TA64 210 aa2.99□□□□□ -1.93
LINC00643-201ENST00000334389 PLEKHD1A6NEE1 506 aa2.99□□□□□ -1.93
LINC00643-201ENST00000334389 ATMINO43313 823 aaPredicted RBP2.99□□□□□ -1.93
LINC00643-201ENST00000334389 DCAF8L2P0C7V8 631 aa2.99□□□□□ -1.93
LINC00643-201ENST00000334389 NGLY1Q96IV0 654 aa2.99□□□□□ -1.93
LINC00643-201ENST00000334389 KRTAP4-6Q9BYQ5 205 aa2.99□□□□□ -1.93
LINC00643-201ENST00000334389 ARHGEF10O15013 1369 aa2.99□□□□□ -1.93
LINC00643-201ENST00000334389 ANKRD30BQ9BXX2 1392 aa2.99□□□□□ -1.93
LINC00643-201ENST00000334389 TNS3Q68CZ2 1445 aa2.98□□□□□ -1.93
LINC00643-201ENST00000334389 BTAF1O14981 1849 aa2.98□□□□□ -1.93
LINC00643-201ENST00000334389 PSME4Q14997 1843 aa2.97□□□□□ -1.93
LINC00643-201ENST00000334389 HDGFP51858 240 aaKnown RBP2.97□□□□□ -1.93
LINC00643-201ENST00000334389 SSUH2Q9Y2M2 353 aa2.97□□□□□ -1.93
LINC00643-201ENST00000334389 PITPNM2Q9BZ72 1349 aa2.97□□□□□ -1.93
LINC00643-201ENST00000334389 LAMB4A4D0S4 1761 aa2.97□□□□□ -1.93
LINC00643-201ENST00000334389 SLC4A2P04920 1241 aa2.97□□□□□ -1.93
LINC00643-201ENST00000334389 ZRANB1Q9UGI0 708 aa2.97□□□□□ -1.93
LINC00643-201ENST00000334389 TRPM7Q96QT4 1865 aa2.97□□□□□ -1.93
LINC00643-201ENST00000334389 ZNF335Q9H4Z2 1342 aaPredicted RBP2.97□□□□□ -1.93
LINC00643-201ENST00000334389 FRMPD3Q5JV73 1810 aa2.97□□□□□ -1.93
LINC00643-201ENST00000334389 PPP1R15AO75807 674 aaPredicted RBP2.97□□□□□ -1.93
LINC00643-201ENST00000334389 LRRC37AA6NMS7 1700 aa2.96□□□□□ -1.94
LINC00643-201ENST00000334389 SBF1O95248 1867 aa2.96□□□□□ -1.94
LINC00643-201ENST00000334389 UBAP1LF5GYI3 381 aa2.96□□□□□ -1.94
LINC00643-201ENST00000334389 RGL2O15211 777 aa2.96□□□□□ -1.94
LINC00643-201ENST00000334389 VPS72Q15906 364 aa2.96□□□□□ -1.94
LINC00643-201ENST00000334389 IER5LQ5T953 404 aa2.96□□□□□ -1.94
LINC00643-201ENST00000334389 POTEAQ6S8J7 498 aa2.96□□□□□ -1.94
LINC00643-201ENST00000334389 THRAP3Q9Y2W1 955 aaKnown RBP2.96□□□□□ -1.94
LINC00643-201ENST00000334389 NFAT5O94916 1531 aa2.96□□□□□ -1.94
LINC00643-201ENST00000334389 FBLN2P98095 1184 aa2.96□□□□□ -1.94
LINC00643-201ENST00000334389 VPS8Q8N3P4 1428 aa2.96□□□□□ -1.94
LINC00643-201ENST00000334389 N4BP2Q86UW6 1770 aaPredicted RBP2.96□□□□□ -1.94
LINC00643-201ENST00000334389 UBR2Q8IWV8 1755 aa2.96□□□□□ -1.94
LINC00643-201ENST00000334389 ITGB4P16144 1822 aa2.96□□□□□ -1.94
LINC00643-201ENST00000334389 BARGINQ6ZT62 677 aa2.95□□□□□ -1.94
LINC00643-201ENST00000334389 CADPS2Q86UW7 1296 aa2.95□□□□□ -1.94
LINC00643-201ENST00000334389 TONSLQ96HA7 1378 aa2.95□□□□□ -1.94
LINC00643-201ENST00000334389 PAPPA2Q9BXP8 1791 aa2.95□□□□□ -1.94
LINC00643-201ENST00000334389 RXRBP28702 533 aa2.95□□□□□ -1.94
LINC00643-201ENST00000334389 RNF166Q96A37 237 aaPredicted RBP2.95□□□□□ -1.94
LINC00643-201ENST00000334389 TRPC5Q9UL62 973 aaPredicted RBP2.95□□□□□ -1.94
LINC00643-201ENST00000334389 COL2A1P02458 1487 aaPredicted RBP2.95□□□□□ -1.94
LINC00643-201ENST00000334389 NPM3O75607 178 aaKnown RBP2.95□□□□□ -1.94
LINC00643-201ENST00000334389 PAK3O75914 559 aaPredicted RBP2.95□□□□□ -1.94
LINC00643-201ENST00000334389 PRDM10Q9NQV6 1147 aa2.95□□□□□ -1.94
LINC00643-201ENST00000334389 GALR2O43603 387 aaPredicted RBP2.94□□□□□ -1.94
LINC00643-201ENST00000334389 PELP1Q8IZL8 1130 aaKnown RBP2.94□□□□□ -1.94
LINC00643-201ENST00000334389 KIF20BQ96Q89 1820 aa2.94□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms