RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 SSH2Q76I76 1423 aa3.08□□□□□ -1.92
LINC00643-201ENST00000334389 XP32Q5T750 250 aa3.08□□□□□ -1.92
LINC00643-201ENST00000334389 DHX57Q6P158 1386 aaKnown RBP3.08□□□□□ -1.92
LINC00643-201ENST00000334389 SNPHO15079 494 aa3.08□□□□□ -1.92
LINC00643-201ENST00000334389 KCNA6P17658 529 aa3.08□□□□□ -1.92
LINC00643-201ENST00000334389 RGS19P49795 217 aa3.08□□□□□ -1.92
LINC00643-201ENST00000334389 EIF3AQ14152 1382 aaKnown RBP3.07□□□□□ -1.92
LINC00643-201ENST00000334389 MON2Q7Z3U7 1717 aa3.07□□□□□ -1.92
LINC00643-201ENST00000334389 DDX60Q8IY21 1712 aaKnown RBP3.07□□□□□ -1.92
LINC00643-201ENST00000334389 COL5A3P25940 1745 aaPredicted RBP3.07□□□□□ -1.92
LINC00643-201ENST00000334389 COL5A2P05997 1499 aaPredicted RBP3.06□□□□□ -1.92
LINC00643-201ENST00000334389 LRPPRCP42704 1394 aaKnown RBP3.06□□□□□ -1.92
LINC00643-201ENST00000334389 THEMISQ8N1K5 641 aaPredicted RBP3.06□□□□□ -1.92
LINC00643-201ENST00000334389 KCPQ6ZWJ8 1503 aa3.05□□□□□ -1.92
LINC00643-201ENST00000334389 KIF15Q9NS87 1388 aa3.05□□□□□ -1.92
LINC00643-201ENST00000334389 SOS2Q07890 1332 aaPredicted RBP3.05□□□□□ -1.92
LINC00643-201ENST00000334389 OVOS2A0A0J9YW53 1432 aa3.05□□□□□ -1.92
LINC00643-201ENST00000334389 OVOS2Q6IE36 1432 aa3.05□□□□□ -1.92
LINC00643-201ENST00000334389 RIMS2Q9UQ26 1411 aa3.05□□□□□ -1.92
LINC00643-201ENST00000334389 METRNQ9UJH8 293 aa3.04□□□□□ -1.92
LINC00643-201ENST00000334389 TBX22Q9Y458 520 aa3.04□□□□□ -1.92
LINC00643-201ENST00000334389 JMYQ8N9B5 988 aa3.04□□□□□ -1.92
LINC00643-201ENST00000334389 RBM6P78332 1123 aaKnown RBP3.04□□□□□ -1.92
LINC00643-201ENST00000334389 SCN4AP35499 1836 aa3.04□□□□□ -1.92
LINC00643-201ENST00000334389 KDM6AO15550 1401 aaPredicted RBP3.04□□□□□ -1.92
LINC00643-201ENST00000334389 POTEJP0CG39 1038 aa3.03□□□□□ -1.92
LINC00643-201ENST00000334389 MSH6P52701 1360 aa3.03□□□□□ -1.92
LINC00643-201ENST00000334389 MYOM3Q5VTT5 1437 aa3.03□□□□□ -1.92
LINC00643-201ENST00000334389 TIAM2Q8IVF5 1701 aa3.03□□□□□ -1.92
LINC00643-201ENST00000334389 CDK11AQ9UQ88 783 aaPredicted RBP3.03□□□□□ -1.92
LINC00643-201ENST00000334389 OVOS2A0A0G2JMS6 1433 aa3.03□□□□□ -1.92
LINC00643-201ENST00000334389 PIK3C2GO75747 1445 aa3.02□□□□□ -1.93
LINC00643-201ENST00000334389 NAIPQ13075 1403 aa3.02□□□□□ -1.93
LINC00643-201ENST00000334389 ANKLE2Q86XL3 938 aa3.02□□□□□ -1.93
LINC00643-201ENST00000334389 CPDO75976 1380 aa3.02□□□□□ -1.93
LINC00643-201ENST00000334389 HSPA1LP34931 641 aa3.02□□□□□ -1.93
LINC00643-201ENST00000334389 TOGARAM1Q9Y4F4 1720 aa3.02□□□□□ -1.93
LINC00643-201ENST00000334389 NCAPD2Q15021 1401 aa3.01□□□□□ -1.93
LINC00643-201ENST00000334389 NSD2O96028 1365 aa3.01□□□□□ -1.93
LINC00643-201ENST00000334389 ZNF609O15014 1411 aa3.01□□□□□ -1.93
LINC00643-201ENST00000334389 ABCF1Q8NE71 845 aaKnown RBP eCLIP3.01□□□□□ -1.93
LINC00643-201ENST00000334389 FARP1Q9Y4F1 1045 aaPredicted RBP3.01□□□□□ -1.93
LINC00643-201ENST00000334389 MAP2P11137 1827 aaKnown RBP3.01□□□□□ -1.93
LINC00643-201ENST00000334389 SLC52A1Q9NWF4 448 aa3□□□□□ -1.93
LINC00643-201ENST00000334389 MEGF6O75095 1541 aa3□□□□□ -1.93
LINC00643-201ENST00000334389 RPGRIP1LQ68CZ1 1315 aa3□□□□□ -1.93
LINC00643-201ENST00000334389 PRELPP51888 382 aa3□□□□□ -1.93
LINC00643-201ENST00000334389 DAPK1P53355 1430 aa3□□□□□ -1.93
LINC00643-201ENST00000334389 ST18O60284 1047 aa2.99□□□□□ -1.93
LINC00643-201ENST00000334389 STAC3Q96MF2 364 aa2.99□□□□□ -1.93
LINC00643-201ENST00000334389 UBR3Q6ZT12 1888 aa2.99□□□□□ -1.93
LINC00643-201ENST00000334389 LOC100996750A0A140TA64 210 aa2.99□□□□□ -1.93
LINC00643-201ENST00000334389 PLEKHD1A6NEE1 506 aa2.99□□□□□ -1.93
LINC00643-201ENST00000334389 ATMINO43313 823 aaPredicted RBP2.99□□□□□ -1.93
LINC00643-201ENST00000334389 DCAF8L2P0C7V8 631 aa2.99□□□□□ -1.93
LINC00643-201ENST00000334389 NGLY1Q96IV0 654 aa2.99□□□□□ -1.93
LINC00643-201ENST00000334389 KRTAP4-6Q9BYQ5 205 aa2.99□□□□□ -1.93
LINC00643-201ENST00000334389 ARHGEF10O15013 1369 aa2.99□□□□□ -1.93
LINC00643-201ENST00000334389 ANKRD30BQ9BXX2 1392 aa2.99□□□□□ -1.93
LINC00643-201ENST00000334389 TNS3Q68CZ2 1445 aa2.98□□□□□ -1.93
LINC00643-201ENST00000334389 BTAF1O14981 1849 aa2.98□□□□□ -1.93
LINC00643-201ENST00000334389 PSME4Q14997 1843 aa2.97□□□□□ -1.93
LINC00643-201ENST00000334389 HDGFP51858 240 aaKnown RBP2.97□□□□□ -1.93
LINC00643-201ENST00000334389 SSUH2Q9Y2M2 353 aa2.97□□□□□ -1.93
LINC00643-201ENST00000334389 PITPNM2Q9BZ72 1349 aa2.97□□□□□ -1.93
LINC00643-201ENST00000334389 LAMB4A4D0S4 1761 aa2.97□□□□□ -1.93
LINC00643-201ENST00000334389 SLC4A2P04920 1241 aa2.97□□□□□ -1.93
LINC00643-201ENST00000334389 ZRANB1Q9UGI0 708 aa2.97□□□□□ -1.93
LINC00643-201ENST00000334389 TRPM7Q96QT4 1865 aa2.97□□□□□ -1.93
LINC00643-201ENST00000334389 ZNF335Q9H4Z2 1342 aaPredicted RBP2.97□□□□□ -1.93
LINC00643-201ENST00000334389 FRMPD3Q5JV73 1810 aa2.97□□□□□ -1.93
LINC00643-201ENST00000334389 PPP1R15AO75807 674 aaPredicted RBP2.97□□□□□ -1.93
LINC00643-201ENST00000334389 LRRC37AA6NMS7 1700 aa2.96□□□□□ -1.94
LINC00643-201ENST00000334389 SBF1O95248 1867 aa2.96□□□□□ -1.94
LINC00643-201ENST00000334389 UBAP1LF5GYI3 381 aa2.96□□□□□ -1.94
LINC00643-201ENST00000334389 RGL2O15211 777 aa2.96□□□□□ -1.94
LINC00643-201ENST00000334389 VPS72Q15906 364 aa2.96□□□□□ -1.94
LINC00643-201ENST00000334389 IER5LQ5T953 404 aa2.96□□□□□ -1.94
LINC00643-201ENST00000334389 POTEAQ6S8J7 498 aa2.96□□□□□ -1.94
LINC00643-201ENST00000334389 THRAP3Q9Y2W1 955 aaKnown RBP2.96□□□□□ -1.94
LINC00643-201ENST00000334389 NFAT5O94916 1531 aa2.96□□□□□ -1.94
LINC00643-201ENST00000334389 FBLN2P98095 1184 aa2.96□□□□□ -1.94
LINC00643-201ENST00000334389 VPS8Q8N3P4 1428 aa2.96□□□□□ -1.94
LINC00643-201ENST00000334389 N4BP2Q86UW6 1770 aaPredicted RBP2.96□□□□□ -1.94
LINC00643-201ENST00000334389 UBR2Q8IWV8 1755 aa2.96□□□□□ -1.94
LINC00643-201ENST00000334389 ITGB4P16144 1822 aa2.96□□□□□ -1.94
LINC00643-201ENST00000334389 BARGINQ6ZT62 677 aa2.95□□□□□ -1.94
LINC00643-201ENST00000334389 CADPS2Q86UW7 1296 aa2.95□□□□□ -1.94
LINC00643-201ENST00000334389 TONSLQ96HA7 1378 aa2.95□□□□□ -1.94
LINC00643-201ENST00000334389 PAPPA2Q9BXP8 1791 aa2.95□□□□□ -1.94
LINC00643-201ENST00000334389 RXRBP28702 533 aa2.95□□□□□ -1.94
LINC00643-201ENST00000334389 RNF166Q96A37 237 aaPredicted RBP2.95□□□□□ -1.94
LINC00643-201ENST00000334389 TRPC5Q9UL62 973 aaPredicted RBP2.95□□□□□ -1.94
LINC00643-201ENST00000334389 COL2A1P02458 1487 aaPredicted RBP2.95□□□□□ -1.94
LINC00643-201ENST00000334389 NPM3O75607 178 aaKnown RBP2.95□□□□□ -1.94
LINC00643-201ENST00000334389 PAK3O75914 559 aaPredicted RBP2.95□□□□□ -1.94
LINC00643-201ENST00000334389 PRDM10Q9NQV6 1147 aa2.95□□□□□ -1.94
LINC00643-201ENST00000334389 GALR2O43603 387 aaPredicted RBP2.94□□□□□ -1.94
LINC00643-201ENST00000334389 PELP1Q8IZL8 1130 aaKnown RBP2.94□□□□□ -1.94
LINC00643-201ENST00000334389 KIF20BQ96Q89 1820 aa2.94□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms