RNA–Protein interactions for RNA: ENST00000298966.6

SMCO4-201, Transcript of single-pass membrane protein with coiled-coil domains 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMCO4, Length 1,104 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCO4-201ENST00000298966 GPRASP1Q5JY77 1395 aa30.39■■■□□ 2.45
SMCO4-201ENST00000298966 ADGRB2O60241 1585 aa30.37■■■□□ 2.45
SMCO4-201ENST00000298966 ALS2Q96Q42 1657 aa30.36■■■□□ 2.45
SMCO4-201ENST00000298966 SPATA31A5Q5VU36 1347 aa30.35■■■□□ 2.45
SMCO4-201ENST00000298966 SPATA31A7Q8IWB4 1347 aa30.35■■■□□ 2.45
SMCO4-201ENST00000298966 EIF3AQ14152 1382 aaKnown RBP30.34■■■□□ 2.45
SMCO4-201ENST00000298966 FAM182BQ5T319 152 aa30.34■■■□□ 2.45
SMCO4-201ENST00000298966 R3HDM1Q15032 1099 aaKnown RBP30.33■■■□□ 2.45
SMCO4-201ENST00000298966 DISP2A7MBM2 1401 aa30.31■■■□□ 2.44
SMCO4-201ENST00000298966 THSD7AQ9UPZ6 1657 aa30.3■■■□□ 2.44
SMCO4-201ENST00000298966 HIRIP3Q9BW71 556 aaPredicted RBP30.3■■■□□ 2.44
SMCO4-201ENST00000298966 TNS1Q9HBL0 1735 aaKnown RBP30.3■■■□□ 2.44
SMCO4-201ENST00000298966 PRDM11Q9NQV5 511 aa30.28■■■□□ 2.44
SMCO4-201ENST00000298966 TRAK1Q9UPV9 953 aa30.28■■■□□ 2.44
SMCO4-201ENST00000298966 TULP4Q9NRJ4 1543 aa30.27■■■□□ 2.44
SMCO4-201ENST00000298966 MINK1Q8N4C8 1332 aaPredicted RBP30.27■■■□□ 2.44
SMCO4-201ENST00000298966 CRYBG1Q9Y4K1 1723 aa30.27■■■□□ 2.44
SMCO4-201ENST00000298966 PRR36Q9H6K5 1346 aa30.26■■■□□ 2.44
SMCO4-201ENST00000298966 PAK3O75914 559 aaPredicted RBP30.26■■■□□ 2.43
SMCO4-201ENST00000298966 NGDNQ8NEJ9 315 aaKnown RBP30.26■■■□□ 2.43
SMCO4-201ENST00000298966 EZH2Q15910 746 aaKnown RBP30.25■■■□□ 2.43
SMCO4-201ENST00000298966 ADGRB1O14514 1584 aa30.24■■■□□ 2.43
SMCO4-201ENST00000298966 WASLO00401 505 aaPredicted RBP30.23■■■□□ 2.43
SMCO4-201ENST00000298966 FAM196AQ6ZSG2 479 aa30.21■■■□□ 2.43
SMCO4-201ENST00000298966 SPATA31A1Q5TZJ5 1347 aa30.21■■■□□ 2.43
SMCO4-201ENST00000298966 TRIM37O94972 964 aa30.2■■■□□ 2.43
SMCO4-201ENST00000298966 CAMKK2Q96RR4 588 aa30.19■■■□□ 2.42
SMCO4-201ENST00000298966 KIAA0232Q92628 1395 aa30.18■■■□□ 2.42
SMCO4-201ENST00000298966 STRN4Q9NRL3 753 aa30.18■■■□□ 2.42
SMCO4-201ENST00000298966 PARD3Q8TEW0 1356 aa30.17■■■□□ 2.42
SMCO4-201ENST00000298966 ITSN1Q15811 1721 aa30.16■■■□□ 2.42
SMCO4-201ENST00000298966 APBA3O96018 575 aa30.16■■■□□ 2.42
SMCO4-201ENST00000298966 CHRNA2Q15822 529 aa30.15■■■□□ 2.42
SMCO4-201ENST00000298966 TIMELESSQ9UNS1 1208 aa30.15■■■□□ 2.42
SMCO4-201ENST00000298966 PHRF1Q9P1Y6 1649 aaKnown RBP30.14■■■□□ 2.41
SMCO4-201ENST00000298966 ZC3H6P61129 1189 aaKnown RBP30.11■■■□□ 2.41
SMCO4-201ENST00000298966 KDM2AQ9Y2K7 1162 aa30.11■■■□□ 2.41
SMCO4-201ENST00000298966 ATP7BP35670 1465 aa30.11■■■□□ 2.41
SMCO4-201ENST00000298966 PDE3BQ13370 1112 aa30.1■■■□□ 2.41
SMCO4-201ENST00000298966 USP35Q9P2H5 1018 aa30.1■■■□□ 2.41
SMCO4-201ENST00000298966 EVA1CP58658 441 aa30.09■■■□□ 2.41
SMCO4-201ENST00000298966 NUDT16Q96DE0 195 aaKnown RBP30.09■■■□□ 2.41
SMCO4-201ENST00000298966 RREB1Q92766 1687 aa30.07■■■□□ 2.41
SMCO4-201ENST00000298966 NBPF8Q3BBV2 869 aa30.07■■■□□ 2.4
SMCO4-201ENST00000298966 NBPF14Q5TI25 921 aa30.07■■■□□ 2.4
SMCO4-201ENST00000298966 BARGINQ6ZT62 677 aa30.07■■■□□ 2.4
SMCO4-201ENST00000298966 DCAF11Q8TEB1 546 aa30.07■■■□□ 2.4
SMCO4-201ENST00000298966 SSH2Q76I76 1423 aa30.05■■■□□ 2.4
SMCO4-201ENST00000298966 NUTM2GQ5VZR2 741 aa30.05■■■□□ 2.4
SMCO4-201ENST00000298966 NUP188Q5SRE5 1749 aa30.05■■■□□ 2.4
SMCO4-201ENST00000298966 ARHGEF28Q8N1W1 1705 aaKnown RBP30.05■■■□□ 2.4
SMCO4-201ENST00000298966 STAC3Q96MF2 364 aa30.04■■■□□ 2.4
SMCO4-201ENST00000298966 YY1P25490 414 aa30.02■■■□□ 2.4
SMCO4-201ENST00000298966 TCP11L2Q8N4U5 519 aa30■■■□□ 2.39
SMCO4-201ENST00000298966 LARP1Q6PKG0 1096 aaKnown RBP29.98■■■□□ 2.39
SMCO4-201ENST00000298966 CDK19Q9BWU1 502 aa29.98■■■□□ 2.39
SMCO4-201ENST00000298966 PPP1R1BQ9UD71 204 aaPredicted RBP29.98■■■□□ 2.39
SMCO4-201ENST00000298966 POLR3AO14802 1390 aaPredicted RBP29.98■■■□□ 2.39
SMCO4-201ENST00000298966 NRKQ7Z2Y5 1582 aa29.98■■■□□ 2.39
SMCO4-201ENST00000298966 CAMTA1Q9Y6Y1 1673 aa29.98■■■□□ 2.39
SMCO4-201ENST00000298966 ACEP12821 1306 aa29.97■■■□□ 2.39
SMCO4-201ENST00000298966 TOPAZ1Q8N9V7 1692 aa29.96■■■□□ 2.39
SMCO4-201ENST00000298966 SPON1Q9HCB6 807 aa29.96■■■□□ 2.39
SMCO4-201ENST00000298966 DCAF8L1A6NGE4 600 aa29.95■■■□□ 2.39
SMCO4-201ENST00000298966 ABTB2Q8N961 1025 aa29.95■■■□□ 2.39
SMCO4-201ENST00000298966 THRAP3Q9Y2W1 955 aaKnown RBP29.95■■■□□ 2.39
SMCO4-201ENST00000298966 CCDC61Q9Y6R9 512 aa29.95■■■□□ 2.39
SMCO4-201ENST00000298966 CPDO75976 1380 aa29.94■■■□□ 2.38
SMCO4-201ENST00000298966 LMO7Q8WWI1 1683 aa29.94■■■□□ 2.38
SMCO4-201ENST00000298966 C11orf95C9JLR9 678 aaPredicted RBP29.92■■■□□ 2.38
SMCO4-201ENST00000298966 SIN3AQ96ST3 1273 aa29.92■■■□□ 2.38
SMCO4-201ENST00000298966 TONSLQ96HA7 1378 aa29.91■■■□□ 2.38
SMCO4-201ENST00000298966 PLEKHG3A1L390 1219 aa29.91■■■□□ 2.38
SMCO4-201ENST00000298966 KCNQ2O43526 872 aa29.91■■■□□ 2.38
SMCO4-201ENST00000298966 USP19O94966 1318 aa29.91■■■□□ 2.38
SMCO4-201ENST00000298966 PARP4Q9UKK3 1724 aaKnown RBP29.91■■■□□ 2.38
SMCO4-201ENST00000298966 NLRP13Q86W25 1043 aa29.89■■■□□ 2.38
SMCO4-201ENST00000298966 NINLQ9Y2I6 1382 aa29.89■■■□□ 2.37
SMCO4-201ENST00000298966 NEUROD1Q13562 356 aa29.88■■■□□ 2.37
SMCO4-201ENST00000298966 COL5A2P05997 1499 aaPredicted RBP29.86■■■□□ 2.37
SMCO4-201ENST00000298966 GCP02774 474 aa29.85■■■□□ 2.37
SMCO4-201ENST00000298966 OVOS2A0A0G2JMS6 1433 aa29.85■■■□□ 2.37
SMCO4-201ENST00000298966 OVOS2A0A0J9YW53 1432 aa29.85■■■□□ 2.37
SMCO4-201ENST00000298966 OVOS2Q6IE36 1432 aa29.85■■■□□ 2.37
SMCO4-201ENST00000298966 CRB1P82279 1406 aa29.83■■■□□ 2.37
SMCO4-201ENST00000298966 RGPD3A6NKT7 1758 aaPredicted RBP29.82■■■□□ 2.36
SMCO4-201ENST00000298966 RGPD4Q7Z3J3 1758 aa29.82■■■□□ 2.36
SMCO4-201ENST00000298966 PEAK1Q9H792 1746 aa29.8■■■□□ 2.36
SMCO4-201ENST00000298966 ZBTB7CA1YPR0 619 aa29.8■■■□□ 2.36
SMCO4-201ENST00000298966 SBF2Q86WG5 1849 aa29.8■■■□□ 2.36
SMCO4-201ENST00000298966 PLSCR1O15162 318 aa29.79■■■□□ 2.36
SMCO4-201ENST00000298966 KIAA1210Q9ULL0 1709 aa29.79■■■□□ 2.36
SMCO4-201ENST00000298966 PPIP5K1Q6PFW1 1433 aa29.79■■■□□ 2.36
SMCO4-201ENST00000298966 SRPK2P78362 688 aaKnown RBP29.78■■■□□ 2.36
SMCO4-201ENST00000298966 BRD4O60885 1362 aaPredicted RBP29.77■■■□□ 2.36
SMCO4-201ENST00000298966 DDB1Q16531 1140 aa29.77■■■□□ 2.36
SMCO4-201ENST00000298966 LRRC37A3O60309 1634 aa29.76■■■□□ 2.35
SMCO4-201ENST00000298966 AATKQ6ZMQ8 1374 aa29.74■■■□□ 2.35
SMCO4-201ENST00000298966 CASZ1Q86V15 1759 aa29.73■■■□□ 2.35
SMCO4-201ENST00000298966 NLRP6P59044 892 aa29.73■■■□□ 2.35
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms