RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 TERF2IPQ9NYB0 399 aa17.74■□□□□ 0.43
SS18-202ENST00000269138 NINLQ9Y2I6 1382 aa17.74■□□□□ 0.43
SS18-202ENST00000269138 SSH2Q76I76 1423 aa17.74■□□□□ 0.43
SS18-202ENST00000269138 CABLES1Q8TDN4 633 aa17.73■□□□□ 0.43
SS18-202ENST00000269138 KIF7Q2M1P5 1343 aa17.73■□□□□ 0.43
SS18-202ENST00000269138 SHPRHQ149N8 1683 aa17.73■□□□□ 0.43
SS18-202ENST00000269138 A0A1W2PP64 1363 aa17.73■□□□□ 0.43
SS18-202ENST00000269138 SPATA31A6Q5VVP1 1343 aa17.72■□□□□ 0.43
SS18-202ENST00000269138 TTC21BQ7Z4L5 1316 aa17.72■□□□□ 0.43
SS18-202ENST00000269138 ARHGEF10O15013 1369 aa17.71■□□□□ 0.43
SS18-202ENST00000269138 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.71■□□□□ 0.43
SS18-202ENST00000269138 ABTB2Q8N961 1025 aa17.71■□□□□ 0.43
SS18-202ENST00000269138 LRP6O75581 1613 aa17.71■□□□□ 0.42
SS18-202ENST00000269138 AKAP12Q02952 1782 aa17.7■□□□□ 0.42
SS18-202ENST00000269138 BRD4O60885 1362 aaPredicted RBP17.7■□□□□ 0.42
SS18-202ENST00000269138 ANKRD36BQ8N2N9 1353 aa17.7■□□□□ 0.42
SS18-202ENST00000269138 ALS2Q96Q42 1657 aa17.7■□□□□ 0.42
SS18-202ENST00000269138 WASHC2AQ641Q2 1341 aa17.69■□□□□ 0.42
SS18-202ENST00000269138 MYOM1P52179 1685 aa17.69■□□□□ 0.42
SS18-202ENST00000269138 COL22A1Q8NFW1 1626 aaPredicted RBP17.69■□□□□ 0.42
SS18-202ENST00000269138 CARD14Q9BXL6 1004 aa17.68■□□□□ 0.42
SS18-202ENST00000269138 ZRANB1Q9UGI0 708 aa17.68■□□□□ 0.42
SS18-202ENST00000269138 CCDC7Q96M83 1385 aa17.68■□□□□ 0.42
SS18-202ENST00000269138 ADAMTS2O95450 1211 aa17.67■□□□□ 0.42
SS18-202ENST00000269138 NME9Q86XW9 330 aa17.67■□□□□ 0.42
SS18-202ENST00000269138 EDC4Q6P2E9 1401 aaKnown RBP17.67■□□□□ 0.42
SS18-202ENST00000269138 MON2Q7Z3U7 1717 aa17.67■□□□□ 0.42
SS18-202ENST00000269138 TTC21AQ8NDW8 1320 aa17.67■□□□□ 0.42
SS18-202ENST00000269138 NLRP6P59044 892 aa17.67■□□□□ 0.42
SS18-202ENST00000269138 MED1Q15648 1581 aaPredicted RBP17.66■□□□□ 0.42
SS18-202ENST00000269138 NRKQ7Z2Y5 1582 aa17.66■□□□□ 0.42
SS18-202ENST00000269138 PANK3Q9H999 370 aa17.66■□□□□ 0.42
SS18-202ENST00000269138 MEX3CQ5U5Q3 659 aaKnown RBP17.65■□□□□ 0.42
SS18-202ENST00000269138 HAP1P54257 671 aaPredicted RBP17.64■□□□□ 0.41
SS18-202ENST00000269138 NLRP13Q86W25 1043 aa17.64■□□□□ 0.41
SS18-202ENST00000269138 PIK3C2AO00443 1686 aa17.63■□□□□ 0.41
SS18-202ENST00000269138 USP19O94966 1318 aa17.63■□□□□ 0.41
SS18-202ENST00000269138 NSD3Q9BZ95 1437 aa17.62■□□□□ 0.41
SS18-202ENST00000269138 C8orf37Q96NL8 207 aa17.62■□□□□ 0.41
SS18-202ENST00000269138 FYB1O15117 783 aa17.6■□□□□ 0.41
SS18-202ENST00000269138 GCP02774 474 aa17.6■□□□□ 0.41
SS18-202ENST00000269138 USP31Q70CQ4 1352 aa17.6■□□□□ 0.41
SS18-202ENST00000269138 ABCA3Q99758 1704 aa17.59■□□□□ 0.41
SS18-202ENST00000269138 ZC3H6P61129 1189 aaKnown RBP17.59■□□□□ 0.41
SS18-202ENST00000269138 NGLY1Q96IV0 654 aa17.59■□□□□ 0.41
SS18-202ENST00000269138 GGNBP2Q9H3C7 697 aa17.59■□□□□ 0.41
SS18-202ENST00000269138 CRYBG1Q9Y4K1 1723 aa17.59■□□□□ 0.41
SS18-202ENST00000269138 FAM83GA6ND36 823 aa17.58■□□□□ 0.41
SS18-202ENST00000269138 SOX12O15370 315 aa17.58■□□□□ 0.41
SS18-202ENST00000269138 RGS17Q9UGC6 210 aaPredicted RBP17.58■□□□□ 0.41
SS18-202ENST00000269138 PHF23Q9BUL5 403 aaPredicted RBP17.57■□□□□ 0.4
SS18-202ENST00000269138 AFF2P51816 1311 aa17.56■□□□□ 0.4
SS18-202ENST00000269138 MARF1Q9Y4F3 1742 aaKnown RBP17.56■□□□□ 0.4
SS18-202ENST00000269138 PHRF1Q9P1Y6 1649 aaKnown RBP17.56■□□□□ 0.4
SS18-202ENST00000269138 KIAA0232Q92628 1395 aa17.56■□□□□ 0.4
SS18-202ENST00000269138 SLIT3O75094 1523 aa17.56■□□□□ 0.4
SS18-202ENST00000269138 CHRNA2Q15822 529 aa17.56■□□□□ 0.4
SS18-202ENST00000269138 COG3Q96JB2 828 aa17.56■□□□□ 0.4
SS18-202ENST00000269138 OVOS2A0A0J9YW53 1432 aa17.56■□□□□ 0.4
SS18-202ENST00000269138 OVOS2Q6IE36 1432 aa17.56■□□□□ 0.4
SS18-202ENST00000269138 PRDM11Q9NQV5 511 aa17.55■□□□□ 0.4
SS18-202ENST00000269138 CGNL1Q0VF96 1302 aa17.55■□□□□ 0.4
SS18-202ENST00000269138 ZBTB7CA1YPR0 619 aa17.54■□□□□ 0.4
SS18-202ENST00000269138 PER1O15534 1290 aaPredicted RBP17.54■□□□□ 0.4
SS18-202ENST00000269138 FBLN1P23142 703 aa17.54■□□□□ 0.4
SS18-202ENST00000269138 FNBP4Q8N3X1 1017 aaPredicted RBP17.54■□□□□ 0.4
SS18-202ENST00000269138 KCNH5Q8NCM2 988 aa17.53■□□□□ 0.4
SS18-202ENST00000269138 KNSTRNQ9Y448 316 aa17.53■□□□□ 0.4
SS18-202ENST00000269138 CPDO75976 1380 aa17.52■□□□□ 0.4
SS18-202ENST00000269138 ARHGEF25Q86VW2 580 aa17.52■□□□□ 0.39
SS18-202ENST00000269138 USP21Q9UK80 565 aa17.52■□□□□ 0.39
SS18-202ENST00000269138 NFAT5O94916 1531 aa17.51■□□□□ 0.39
SS18-202ENST00000269138 USP54Q70EL1 1684 aa17.51■□□□□ 0.39
SS18-202ENST00000269138 AMER1Q5JTC6 1135 aaPredicted RBP17.51■□□□□ 0.39
SS18-202ENST00000269138 POTEAQ6S8J7 498 aa17.51■□□□□ 0.39
SS18-202ENST00000269138 BCL9LQ86UU0 1499 aa17.5■□□□□ 0.39
SS18-202ENST00000269138 SLIT2O94813 1529 aa17.5■□□□□ 0.39
SS18-202ENST00000269138 BTG4Q9NY30 223 aa17.5■□□□□ 0.39
SS18-202ENST00000269138 KIF20BQ96Q89 1820 aa17.49■□□□□ 0.39
SS18-202ENST00000269138 DDX10Q13206 875 aaKnown RBP17.48■□□□□ 0.39
SS18-202ENST00000269138 ZNF772Q68DY9 489 aaPredicted RBP17.48■□□□□ 0.39
SS18-202ENST00000269138 ZNF316A6NFI3 1004 aaPredicted RBP17.47■□□□□ 0.39
SS18-202ENST00000269138 UNC5CLQ8IV45 518 aa17.47■□□□□ 0.39
SS18-202ENST00000269138 QTRT2Q9H974 415 aaKnown RBP17.47■□□□□ 0.39
SS18-202ENST00000269138 AXIN2Q9Y2T1 843 aa17.47■□□□□ 0.39
SS18-202ENST00000269138 COL14A1Q05707 1796 aaKnown RBP17.47■□□□□ 0.39
SS18-202ENST00000269138 CNGB1Q14028 1251 aaPredicted RBP17.47■□□□□ 0.39
SS18-202ENST00000269138 RRS1Q15050 365 aaKnown RBP17.47■□□□□ 0.39
SS18-202ENST00000269138 AATKQ6ZMQ8 1374 aa17.46■□□□□ 0.39
SS18-202ENST00000269138 TNNT2P45379 298 aaPredicted RBP17.46■□□□□ 0.39
SS18-202ENST00000269138 CC2D1BQ5T0F9 858 aaKnown RBP17.46■□□□□ 0.39
SS18-202ENST00000269138 PLCH1Q4KWH8 1693 aa17.45■□□□□ 0.38
SS18-202ENST00000269138 CAMTA1Q9Y6Y1 1673 aa17.45■□□□□ 0.38
SS18-202ENST00000269138 MAP3K19Q56UN5 1328 aa17.45■□□□□ 0.38
SS18-202ENST00000269138 STRN4Q9NRL3 753 aa17.45■□□□□ 0.38
SS18-202ENST00000269138 NSD2O96028 1365 aa17.44■□□□□ 0.38
SS18-202ENST00000269138 MORC1Q86VD1 984 aa17.44■□□□□ 0.38
SS18-202ENST00000269138 TRPC5Q9UL62 973 aaPredicted RBP17.43■□□□□ 0.38
SS18-202ENST00000269138 LMO7Q8WWI1 1683 aa17.43■□□□□ 0.38
SS18-202ENST00000269138 ATRNO75882 1429 aa17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms