RNA–Protein interactions for RNA: ENST00000239243.6

MSX2-201, Transcript of msh homeobox 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX2, Length 2,241 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2-201ENST00000239243 AMOTL2Q9Y2J4 779 aa30.51■■■□□ 2.48
MSX2-201ENST00000239243 ADAMTSL3P82987 1691 aa30.51■■■□□ 2.47
MSX2-201ENST00000239243 PNPLA6Q8IY17 1366 aa30.51■■■□□ 2.47
MSX2-201ENST00000239243 NKTRP30414 1462 aaKnown RBP30.5■■■□□ 2.47
MSX2-201ENST00000239243 TOPAZ1Q8N9V7 1692 aa30.5■■■□□ 2.47
MSX2-201ENST00000239243 WWC1Q8IX03 1113 aa30.5■■■□□ 2.47
MSX2-201ENST00000239243 TCP11L2Q8N4U5 519 aa30.5■■■□□ 2.47
MSX2-201ENST00000239243 ZNF142P52746 1687 aaPredicted RBP30.49■■■□□ 2.47
MSX2-201ENST00000239243 CCDC136Q96JN2 1154 aa30.49■■■□□ 2.47
MSX2-201ENST00000239243 DNAJC5Q9H3Z4 198 aa30.49■■■□□ 2.47
MSX2-201ENST00000239243 PIK3R4Q99570 1358 aa30.48■■■□□ 2.47
MSX2-201ENST00000239243 CCDC27Q2M243 656 aa30.48■■■□□ 2.47
MSX2-201ENST00000239243 PRR36Q9H6K5 1346 aa30.48■■■□□ 2.47
MSX2-201ENST00000239243 XRN1Q8IZH2 1706 aaKnown RBP30.46■■■□□ 2.47
MSX2-201ENST00000239243 PHF23Q9BUL5 403 aaPredicted RBP30.46■■■□□ 2.47
MSX2-201ENST00000239243 DIAPH1O60610 1272 aaKnown RBP30.45■■■□□ 2.46
MSX2-201ENST00000239243 PNNQ9H307 717 aaKnown RBP30.44■■■□□ 2.46
MSX2-201ENST00000239243 WDR63Q8IWG1 891 aa30.43■■■□□ 2.46
MSX2-201ENST00000239243 GOLGA6L2Q8N9W4 650 aaPredicted RBP30.43■■■□□ 2.46
MSX2-201ENST00000239243 AATKQ6ZMQ8 1374 aa30.43■■■□□ 2.46
MSX2-201ENST00000239243 PLEKHG3A1L390 1219 aa30.42■■■□□ 2.46
MSX2-201ENST00000239243 U2SURPO15042 1029 aaKnown RBP30.42■■■□□ 2.46
MSX2-201ENST00000239243 SPINK5Q9NQ38 1064 aaPredicted RBP30.42■■■□□ 2.46
MSX2-201ENST00000239243 NCKAP5LQ9HCH0 1330 aa30.42■■■□□ 2.46
MSX2-201ENST00000239243 COG3Q96JB2 828 aa30.41■■■□□ 2.46
MSX2-201ENST00000239243 NME9Q86XW9 330 aa30.4■■■□□ 2.46
MSX2-201ENST00000239243 POLKQ9UBT6 870 aa30.39■■■□□ 2.46
MSX2-201ENST00000239243 MAP2P11137 1827 aaKnown RBP30.39■■■□□ 2.46
MSX2-201ENST00000239243 NRKQ7Z2Y5 1582 aa30.39■■■□□ 2.46
MSX2-201ENST00000239243 EXOC6Q8TAG9 804 aa30.39■■■□□ 2.46
MSX2-201ENST00000239243 SETD1BQ9UPS6 1966 aaKnown RBP30.38■■■□□ 2.45
MSX2-201ENST00000239243 NEUROD2Q15784 382 aa30.38■■■□□ 2.45
MSX2-201ENST00000239243 ANKLE2Q86XL3 938 aa30.38■■■□□ 2.45
MSX2-201ENST00000239243 RRP7AQ9Y3A4 280 aaKnown RBP30.37■■■□□ 2.45
MSX2-201ENST00000239243 MAPK8IP3Q9UPT6 1336 aa30.37■■■□□ 2.45
MSX2-201ENST00000239243 CDK12Q9NYV4 1490 aaPredicted RBP30.36■■■□□ 2.45
MSX2-201ENST00000239243 PLEKHF1Q96S99 279 aa30.36■■■□□ 2.45
MSX2-201ENST00000239243 DMRT2Q9Y5R5 561 aa30.35■■■□□ 2.45
MSX2-201ENST00000239243 ACEP12821 1306 aa30.35■■■□□ 2.45
MSX2-201ENST00000239243 PLIN1O60240 522 aa30.35■■■□□ 2.45
MSX2-201ENST00000239243 USP6P35125 1406 aa30.34■■■□□ 2.45
MSX2-201ENST00000239243 TTC21BQ7Z4L5 1316 aa30.32■■■□□ 2.44
MSX2-201ENST00000239243 FCHSD2O94868 740 aa30.31■■■□□ 2.44
MSX2-201ENST00000239243 PPM1GO15355 546 aaPredicted RBP30.3■■■□□ 2.44
MSX2-201ENST00000239243 ANKARQ7Z5J8 1434 aa30.3■■■□□ 2.44
MSX2-201ENST00000239243 MYH16Q9H6N6 1097 aa30.3■■■□□ 2.44
MSX2-201ENST00000239243 KCNA6P17658 529 aa30.28■■■□□ 2.44
MSX2-201ENST00000239243 TMPOP42166 694 aaKnown RBP30.28■■■□□ 2.44
MSX2-201ENST00000239243 NUTM2FA1L443 756 aa30.27■■■□□ 2.44
MSX2-201ENST00000239243 ZRANB1Q9UGI0 708 aa30.27■■■□□ 2.44
MSX2-201ENST00000239243 NEFMP07197 916 aa30.27■■■□□ 2.44
MSX2-201ENST00000239243 CRBNQ96SW2 442 aa30.27■■■□□ 2.44
MSX2-201ENST00000239243 EMILIN1Q9Y6C2 1016 aa30.26■■■□□ 2.43
MSX2-201ENST00000239243 CHD2O14647 1828 aaKnown RBP30.26■■■□□ 2.43
MSX2-201ENST00000239243 TTC21AQ8NDW8 1320 aa30.26■■■□□ 2.43
MSX2-201ENST00000239243 OVOS2A0A0J9YW53 1432 aa30.26■■■□□ 2.43
MSX2-201ENST00000239243 OVOS2Q6IE36 1432 aa30.26■■■□□ 2.43
MSX2-201ENST00000239243 LRRC7Q96NW7 1537 aa30.25■■■□□ 2.43
MSX2-201ENST00000239243 SSH2Q76I76 1423 aa30.25■■■□□ 2.43
MSX2-201ENST00000239243 FBLN1P23142 703 aa30.24■■■□□ 2.43
MSX2-201ENST00000239243 NALCNQ8IZF0 1738 aa30.22■■■□□ 2.43
MSX2-201ENST00000239243 FMN2Q9NZ56 1722 aa30.22■■■□□ 2.43
MSX2-201ENST00000239243 RSPH6AQ9H0K4 717 aa30.22■■■□□ 2.43
MSX2-201ENST00000239243 IL16Q14005 1332 aa30.21■■■□□ 2.43
MSX2-201ENST00000239243 IL13P35225 146 aa30.2■■■□□ 2.43
MSX2-201ENST00000239243 C20orf194Q5TEA3 1177 aa30.2■■■□□ 2.42
MSX2-201ENST00000239243 RGPD8O14715 1765 aaPredicted RBP30.19■■■□□ 2.42
MSX2-201ENST00000239243 NGDNQ8NEJ9 315 aaKnown RBP30.19■■■□□ 2.42
MSX2-201ENST00000239243 TRIM35Q9UPQ4 493 aa30.18■■■□□ 2.42
MSX2-201ENST00000239243 RIPK4P57078 832 aa30.18■■■□□ 2.42
MSX2-201ENST00000239243 RBM19Q9Y4C8 960 aaKnown RBP30.18■■■□□ 2.42
MSX2-201ENST00000239243 USP31Q70CQ4 1352 aa30.18■■■□□ 2.42
MSX2-201ENST00000239243 BCAR3O75815 825 aa30.17■■■□□ 2.42
MSX2-201ENST00000239243 CT47B1P0C2W7 299 aaPredicted RBP30.17■■■□□ 2.42
MSX2-201ENST00000239243 PRKAR2BP31323 418 aa30.17■■■□□ 2.42
MSX2-201ENST00000239243 RRS1Q15050 365 aaKnown RBP30.17■■■□□ 2.42
MSX2-201ENST00000239243 PMFBP1Q8TBY8 1022 aa30.16■■■□□ 2.42
MSX2-201ENST00000239243 NPHP4O75161 1426 aaPredicted RBP30.15■■■□□ 2.42
MSX2-201ENST00000239243 PDE3AQ14432 1141 aa30.14■■■□□ 2.41
MSX2-201ENST00000239243 RARSP54136 660 aaKnown RBP30.12■■■□□ 2.41
MSX2-201ENST00000239243 FANCIQ9NVI1 1328 aa30.1■■■□□ 2.41
MSX2-201ENST00000239243 HMOX1P09601 288 aa30.1■■■□□ 2.41
MSX2-201ENST00000239243 CANXP27824 592 aaKnown RBP30.1■■■□□ 2.41
MSX2-201ENST00000239243 NFE2L2Q16236 605 aa30.1■■■□□ 2.41
MSX2-201ENST00000239243 CALD1Q05682 793 aaKnown RBP30.07■■■□□ 2.4
MSX2-201ENST00000239243 ADGRL3Q9HAR2 1447 aa30.07■■■□□ 2.4
MSX2-201ENST00000239243 PIK3C2AO00443 1686 aa30.06■■■□□ 2.4
MSX2-201ENST00000239243 LMOD3Q0VAK6 560 aa30.04■■■□□ 2.4
MSX2-201ENST00000239243 USP54Q70EL1 1684 aa30.04■■■□□ 2.4
MSX2-201ENST00000239243 PEAK1Q9H792 1746 aa30.03■■■□□ 2.4
MSX2-201ENST00000239243 EIF4A2Q14240 407 aaKnown RBP30.03■■■□□ 2.4
MSX2-201ENST00000239243 PHACTR3Q96KR7 559 aa30.03■■■□□ 2.4
MSX2-201ENST00000239243 TSR2Q969E8 191 aaKnown RBP30.02■■■□□ 2.4
MSX2-201ENST00000239243 NWD1Q149M9 1564 aa30.02■■■□□ 2.4
MSX2-201ENST00000239243 SBNO1A3KN83 1393 aa30■■■□□ 2.39
MSX2-201ENST00000239243 EXOSC9Q06265 439 aaKnown RBP29.99■■■□□ 2.39
MSX2-201ENST00000239243 CENPQQ7L2Z9 268 aaPredicted RBP29.99■■■□□ 2.39
MSX2-201ENST00000239243 FRAT1Q92837 279 aaPredicted RBP29.99■■■□□ 2.39
MSX2-201ENST00000239243 PHF8Q9UPP1 1060 aa29.99■■■□□ 2.39
MSX2-201ENST00000239243 FLT4P35916 1363 aa29.99■■■□□ 2.39
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms