RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 ARHGAP5Q13017 1502 aa16.22■□□□□ 0.19
SF3A1-201ENST00000215793 CCT4P50991 539 aaKnown RBP16.22■□□□□ 0.19
SF3A1-201ENST00000215793 CCDC173Q0VFZ6 552 aa16.22■□□□□ 0.19
SF3A1-201ENST00000215793 FYB1O15117 783 aa16.22■□□□□ 0.19
SF3A1-201ENST00000215793 MTERF4Q7Z6M4 381 aaKnown RBP16.22■□□□□ 0.19
SF3A1-201ENST00000215793 PNISRQ8TF01 805 aaKnown RBP16.22■□□□□ 0.19
SF3A1-201ENST00000215793 TRIM5Q9C035 493 aa16.22■□□□□ 0.19
SF3A1-201ENST00000215793 EPS15P42566 896 aa16.22■□□□□ 0.19
SF3A1-201ENST00000215793 CAVIN1Q6NZI2 390 aaKnown RBP16.22■□□□□ 0.19
SF3A1-201ENST00000215793 WDR63Q8IWG1 891 aa16.22■□□□□ 0.19
SF3A1-201ENST00000215793 PRAM1Q96QH2 718 aa16.22■□□□□ 0.19
SF3A1-201ENST00000215793 HDGFL1Q5TGJ6 251 aa16.21■□□□□ 0.19
SF3A1-201ENST00000215793 TXNDC2Q86VQ3 553 aa16.21■□□□□ 0.19
SF3A1-201ENST00000215793 ZNF396Q96N95 335 aaPredicted RBP16.21■□□□□ 0.19
SF3A1-201ENST00000215793 DNAJC2Q99543 621 aaKnown RBP16.21■□□□□ 0.19
SF3A1-201ENST00000215793 SYNJ2O15056 1496 aa16.21■□□□□ 0.19
SF3A1-201ENST00000215793 SLC3A2P08195 630 aaKnown RBP16.21■□□□□ 0.19
SF3A1-201ENST00000215793 ODF2Q5BJF6 829 aa16.21■□□□□ 0.19
SF3A1-201ENST00000215793 R3HCC1Q9Y3T6 440 aaKnown RBP16.21■□□□□ 0.19
SF3A1-201ENST00000215793 KIF6Q6ZMV9 814 aa16.21■□□□□ 0.18
SF3A1-201ENST00000215793 CWC22Q9HCG8 908 aaKnown RBP16.21■□□□□ 0.18
SF3A1-201ENST00000215793 SMG6Q86US8 1419 aaKnown RBP16.2■□□□□ 0.18
SF3A1-201ENST00000215793 PDILTQ8N807 584 aa16.2■□□□□ 0.18
SF3A1-201ENST00000215793 AQRO60306 1485 aaKnown RBP eCLIP16.2■□□□□ 0.181e-8■■■■□ 23.6
SF3A1-201ENST00000215793 SLC4A2P04920 1241 aa16.2■□□□□ 0.18
SF3A1-201ENST00000215793 NBPF1Q3BBV0 1214 aa16.2■□□□□ 0.18
SF3A1-201ENST00000215793 JMYQ8N9B5 988 aa16.2■□□□□ 0.18
SF3A1-201ENST00000215793 PIP4K2AP48426 406 aaPredicted RBP16.2■□□□□ 0.18
SF3A1-201ENST00000215793 MAP7D2Q96T17 732 aa16.2■□□□□ 0.18
SF3A1-201ENST00000215793 NOB1Q9ULX3 412 aaKnown RBP16.2■□□□□ 0.18
SF3A1-201ENST00000215793 TXLNAP40222 546 aa16.19■□□□□ 0.18
SF3A1-201ENST00000215793 FILIP1LQ4L180 1135 aa16.19■□□□□ 0.18
SF3A1-201ENST00000215793 SLC12A5Q9H2X9 1139 aa16.19■□□□□ 0.18
SF3A1-201ENST00000215793 KIAA1107Q9UPP5 1409 aa16.19■□□□□ 0.18
SF3A1-201ENST00000215793 ANKRD1Q15327 319 aa16.19■□□□□ 0.18
SF3A1-201ENST00000215793 CCDC158Q5M9N0 1113 aa16.19■□□□□ 0.18
SF3A1-201ENST00000215793 SLC52A1Q9NWF4 448 aa16.19■□□□□ 0.18
SF3A1-201ENST00000215793 CCP110O43303 1012 aa16.19■□□□□ 0.18
SF3A1-201ENST00000215793 TATP17735 454 aaPredicted RBP16.19■□□□□ 0.18
SF3A1-201ENST00000215793 ESCO1Q5FWF5 840 aa16.19■□□□□ 0.18
SF3A1-201ENST00000215793 TSPY26PQ9H489 355 aa16.19■□□□□ 0.18
SF3A1-201ENST00000215793 PRPF40AO75400 957 aaKnown RBP16.18■□□□□ 0.18
SF3A1-201ENST00000215793 ERCC4Q92889 916 aaPredicted RBP16.18■□□□□ 0.18
SF3A1-201ENST00000215793 GRIN2BQ13224 1484 aa16.18■□□□□ 0.18
SF3A1-201ENST00000215793 PRDM2Q13029 1718 aa16.18■□□□□ 0.18
SF3A1-201ENST00000215793 DHX8Q14562 1220 aaKnown RBP16.18■□□□□ 0.18
SF3A1-201ENST00000215793 SULT6B1Q6IMI4 303 aa16.18■□□□□ 0.18
SF3A1-201ENST00000215793 STK38Q15208 465 aa16.18■□□□□ 0.18
SF3A1-201ENST00000215793 ATF7IPQ6VMQ6 1270 aa16.18■□□□□ 0.18
SF3A1-201ENST00000215793 SRCIN1Q9C0H9 1055 aa16.18■□□□□ 0.18
SF3A1-201ENST00000215793 CYP46A1Q9Y6A2 500 aa16.18■□□□□ 0.18
SF3A1-201ENST00000215793 LRRCC1Q9C099 1032 aa16.17■□□□□ 0.18
SF3A1-201ENST00000215793 SAMD1Q6SPF0 538 aaPredicted RBP16.17■□□□□ 0.18
SF3A1-201ENST00000215793 TSR2Q969E8 191 aaKnown RBP16.17■□□□□ 0.18
SF3A1-201ENST00000215793 ZNF428Q96B54 188 aa16.17■□□□□ 0.18
SF3A1-201ENST00000215793 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.17■□□□□ 0.181e-6■□□□□ 10.3
SF3A1-201ENST00000215793 SMARCE1Q969G3 411 aa16.17■□□□□ 0.18
SF3A1-201ENST00000215793 PLEKHH2Q8IVE3 1493 aa16.17■□□□□ 0.18
SF3A1-201ENST00000215793 FIBPO43427 364 aa16.17■□□□□ 0.18
SF3A1-201ENST00000215793 AEBP1Q8IUX7 1158 aa16.17■□□□□ 0.18
SF3A1-201ENST00000215793 GNL3LQ9NVN8 582 aaKnown RBP16.17■□□□□ 0.18
SF3A1-201ENST00000215793 ATP2B1P20020 1258 aa16.16■□□□□ 0.18
SF3A1-201ENST00000215793 HMGN5P82970 282 aaKnown RBP16.16■□□□□ 0.18
SF3A1-201ENST00000215793 C1orf115Q9H7X2 142 aa16.16■□□□□ 0.18
SF3A1-201ENST00000215793 NCAPD3P42695 1498 aa16.16■□□□□ 0.18
SF3A1-201ENST00000215793 IKQ13123 557 aaPredicted RBP16.16■□□□□ 0.18
SF3A1-201ENST00000215793 ERICH3Q5RHP9 1530 aa16.16■□□□□ 0.18
SF3A1-201ENST00000215793 PATL2C9JE40 543 aaKnown RBP16.16■□□□□ 0.18
SF3A1-201ENST00000215793 BCAR3O75815 825 aa16.16■□□□□ 0.18
SF3A1-201ENST00000215793 CAGE1Q8TC20 777 aa16.15■□□□□ 0.18
SF3A1-201ENST00000215793 CFTRP13569 1480 aa16.15■□□□□ 0.18
SF3A1-201ENST00000215793 WDR33Q9C0J8 1336 aaKnown RBP16.15■□□□□ 0.18
SF3A1-201ENST00000215793 SMC2O95347 1197 aa16.15■□□□□ 0.18
SF3A1-201ENST00000215793 RDXP35241 583 aaKnown RBP16.15■□□□□ 0.18
SF3A1-201ENST00000215793 PROSER2Q86WR7 435 aaPredicted RBP16.15■□□□□ 0.18
SF3A1-201ENST00000215793 CNNM1Q9NRU3 951 aa16.15■□□□□ 0.18
SF3A1-201ENST00000215793 THEMISQ8N1K5 641 aaPredicted RBP16.15■□□□□ 0.18
SF3A1-201ENST00000215793 CABP1Q9NZU7 370 aa16.15■□□□□ 0.18
SF3A1-201ENST00000215793 MVPQ14764 893 aaKnown RBP16.14■□□□□ 0.17
SF3A1-201ENST00000215793 CDK5RAP3Q96JB5 506 aa16.14■□□□□ 0.17
SF3A1-201ENST00000215793 RBM42Q9BTD8 480 aaKnown RBP16.14■□□□□ 0.17
SF3A1-201ENST00000215793 CDK19Q9BWU1 502 aa16.14■□□□□ 0.17
SF3A1-201ENST00000215793 C9orf84Q5VXU9 1444 aa16.14■□□□□ 0.17
SF3A1-201ENST00000215793 NACAP1Q9BZK3 213 aa16.14■□□□□ 0.17
SF3A1-201ENST00000215793 MYO6Q9UM54 1294 aa16.14■□□□□ 0.17
SF3A1-201ENST00000215793 NOM1Q5C9Z4 860 aaKnown RBP16.14■□□□□ 0.17
SF3A1-201ENST00000215793 TTC39AQ5SRH9 613 aa16.14■□□□□ 0.17
SF3A1-201ENST00000215793 FMNL2Q96PY5 1086 aa16.14■□□□□ 0.17
SF3A1-201ENST00000215793 MAGEC2Q9UBF1 373 aaPredicted RBP16.14■□□□□ 0.17
SF3A1-201ENST00000215793 MTMR7Q9Y216 660 aa16.14■□□□□ 0.17
SF3A1-201ENST00000215793 TRIM22Q8IYM9 498 aa16.14■□□□□ 0.17
SF3A1-201ENST00000215793 BACH2Q9BYV9 841 aa16.14■□□□□ 0.17
SF3A1-201ENST00000215793 RRP12Q5JTH9 1297 aaKnown RBP16.13■□□□□ 0.17
SF3A1-201ENST00000215793 CCDC192P0DO97 292 aa16.13■□□□□ 0.17
SF3A1-201ENST00000215793 ZNF530Q6P9A1 599 aaPredicted RBP16.13■□□□□ 0.17
SF3A1-201ENST00000215793 CCAR1Q8IX12 1150 aaKnown RBP16.13■□□□□ 0.17
SF3A1-201ENST00000215793 ARAP1Q96P48 1450 aa16.12■□□□□ 0.17
SF3A1-201ENST00000215793 K7ELQ4 463 aaPredicted RBP16.12■□□□□ 0.17
SF3A1-201ENST00000215793 NBPF8Q3BBV2 869 aa16.12■□□□□ 0.17
SF3A1-201ENST00000215793 CNKSR2Q8WXI2 1034 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 143.1 ms