RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 PI4KAP42356 2102 aa13.39□□□□□ -0.27
CLK3-224ENST00000568605 FAM186AA6NE01 2351 aa13.38□□□□□ -0.27
CLK3-224ENST00000568605 PIEZO1Q92508 2521 aa13.38□□□□□ -0.27
CLK3-224ENST00000568605 A0A087X0T9 212 aa13.38□□□□□ -0.27
CLK3-224ENST00000568605 AKR1B15C9JRZ8 316 aaPredicted RBP13.38□□□□□ -0.27
CLK3-224ENST00000568605 E9PAM4 449 aa13.38□□□□□ -0.27
CLK3-224ENST00000568605 RPP40O75818 363 aaKnown RBP13.38□□□□□ -0.27
CLK3-224ENST00000568605 RHOCP08134 193 aa13.38□□□□□ -0.27
CLK3-224ENST00000568605 DLDP09622 509 aaKnown RBP13.38□□□□□ -0.27
CLK3-224ENST00000568605 FAM228BP0C875 321 aa13.38□□□□□ -0.27
CLK3-224ENST00000568605 ADRA1BP35368 520 aa13.38□□□□□ -0.27
CLK3-224ENST00000568605 NNMTP40261 264 aa13.38□□□□□ -0.27
CLK3-224ENST00000568605 CSKP41240 450 aa13.38□□□□□ -0.27
CLK3-224ENST00000568605 IL12RB1P42701 662 aa13.38□□□□□ -0.27
CLK3-224ENST00000568605 WASP42768 502 aa13.38□□□□□ -0.27
CLK3-224ENST00000568605 HDAC4P56524 1084 aa13.38□□□□□ -0.27
CLK3-224ENST00000568605 NRG1Q02297 640 aaPredicted RBP13.38□□□□□ -0.27
CLK3-224ENST00000568605 SULT2A1Q06520 285 aa13.38□□□□□ -0.27
CLK3-224ENST00000568605 SCAPQ12770 1279 aa13.38□□□□□ -0.27
CLK3-224ENST00000568605 MAPK8IP2Q13387 824 aaPredicted RBP13.38□□□□□ -0.27
CLK3-224ENST00000568605 SLC18A3Q16572 532 aa13.38□□□□□ -0.27
CLK3-224ENST00000568605 PLEKHG6Q3KR16 790 aa13.38□□□□□ -0.27
CLK3-224ENST00000568605 FUT11Q495W5 492 aa13.38□□□□□ -0.27
CLK3-224ENST00000568605 USP39Q53GS9 565 aaKnown RBP13.38□□□□□ -0.27
CLK3-224ENST00000568605 PITRM1Q5JRX3 1037 aa13.38□□□□□ -0.27
CLK3-224ENST00000568605 CCDC122Q5T0U0 273 aa13.38□□□□□ -0.27
CLK3-224ENST00000568605 C6orf118Q5T5N4 469 aa13.38□□□□□ -0.27
CLK3-224ENST00000568605 SCYL2Q6P3W7 929 aa13.38□□□□□ -0.27
CLK3-224ENST00000568605 PRR23BQ6ZRT6 265 aa13.38□□□□□ -0.27
CLK3-224ENST00000568605 SLFN11Q7Z7L1 901 aa13.38□□□□□ -0.27
CLK3-224ENST00000568605 ADIPOR2Q86V24 386 aa13.38□□□□□ -0.27
CLK3-224ENST00000568605 RASSF3Q86WH2 238 aa13.38□□□□□ -0.27
CLK3-224ENST00000568605 CIR1Q86X95 450 aaPredicted RBP13.38□□□□□ -0.27
CLK3-224ENST00000568605 ABCA7Q8IZY2 2146 aa13.38□□□□□ -0.27
CLK3-224ENST00000568605 MDGA1Q8NFP4 955 aa13.38□□□□□ -0.27
CLK3-224ENST00000568605 HMGB4Q8WW32 186 aa13.38□□□□□ -0.27
CLK3-224ENST00000568605 IGSF8Q969P0 613 aa13.38□□□□□ -0.27
CLK3-224ENST00000568605 ZYG11BQ9C0D3 744 aa13.38□□□□□ -0.27
CLK3-224ENST00000568605 RETREG1Q9H6L5 497 aa13.38□□□□□ -0.27
CLK3-224ENST00000568605 FBRSQ9HAH7 460 aa13.38□□□□□ -0.27
CLK3-224ENST00000568605 SMG5Q9UPR3 1016 aaKnown RBP13.38□□□□□ -0.27
CLK3-224ENST00000568605 IGLV3-10A0A075B6K4 115 aa13.37□□□□□ -0.27
CLK3-224ENST00000568605 PRR23AA6NEV1 266 aa13.37□□□□□ -0.27
CLK3-224ENST00000568605 EIF3CLB5ME19 914 aaKnown RBP13.37□□□□□ -0.27
CLK3-224ENST00000568605 GFRA3O60609 400 aa13.37□□□□□ -0.27
CLK3-224ENST00000568605 SRGAP2O75044 1071 aa13.37□□□□□ -0.27
CLK3-224ENST00000568605 EPHX1P07099 455 aa13.37□□□□□ -0.27
CLK3-224ENST00000568605 SRPRAP08240 638 aaKnown RBP13.37□□□□□ -0.27
CLK3-224ENST00000568605 EIF4A3P38919 411 aaKnown RBP13.37□□□□□ -0.27
CLK3-224ENST00000568605 PXNP49023 591 aaPredicted RBP13.37□□□□□ -0.27
CLK3-224ENST00000568605 DMWDQ09019 674 aa13.37□□□□□ -0.27
CLK3-224ENST00000568605 ENPP2Q13822 863 aa13.37□□□□□ -0.27
CLK3-224ENST00000568605 SIM2Q14190 667 aaPredicted RBP13.37□□□□□ -0.27
CLK3-224ENST00000568605 ACAP1Q15027 740 aa13.37□□□□□ -0.27
CLK3-224ENST00000568605 TMEM215Q68D42 235 aa13.37□□□□□ -0.27
CLK3-224ENST00000568605 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.37□□□□□ -0.27
CLK3-224ENST00000568605 SETD3Q86TU7 594 aaPredicted RBP13.37□□□□□ -0.27
CLK3-224ENST00000568605 CCDC185Q8N715 623 aa13.37□□□□□ -0.27
CLK3-224ENST00000568605 KDM1BQ8NB78 822 aa13.37□□□□□ -0.27
CLK3-224ENST00000568605 CTNNBL1Q8WYA6 563 aaPredicted RBP13.37□□□□□ -0.27
CLK3-224ENST00000568605 TTC17Q96AE7 1141 aa13.37□□□□□ -0.27
CLK3-224ENST00000568605 TBC1D31Q96DN5 1066 aa13.37□□□□□ -0.27
CLK3-224ENST00000568605 MYEOVQ96EZ4 313 aa13.37□□□□□ -0.27
CLK3-224ENST00000568605 CCDC42Q96M95 316 aa13.37□□□□□ -0.27
CLK3-224ENST00000568605 ACOX2Q99424 681 aa13.37□□□□□ -0.27
CLK3-224ENST00000568605 EIF3CQ99613 913 aaKnown RBP13.37□□□□□ -0.27
CLK3-224ENST00000568605 EPAS1Q99814 870 aa13.37□□□□□ -0.27
CLK3-224ENST00000568605 TPSD1Q9BZJ3 242 aa13.37□□□□□ -0.27
CLK3-224ENST00000568605 MUC3BQ9H195 1237 aa13.37□□□□□ -0.27
CLK3-224ENST00000568605 OSBPL2Q9H1P3 480 aa13.37□□□□□ -0.27
CLK3-224ENST00000568605 POLR3BQ9NW08 1133 aaPredicted RBP13.37□□□□□ -0.27
CLK3-224ENST00000568605 PPARGC1AQ9UBK2 798 aaKnown RBP13.37□□□□□ -0.27
CLK3-224ENST00000568605 OR12D3Q9UGF7 316 aa13.37□□□□□ -0.27
CLK3-224ENST00000568605 LCMT1Q9UIC8 334 aa13.37□□□□□ -0.27
CLK3-224ENST00000568605 SLC25A13Q9UJS0 675 aa13.37□□□□□ -0.27
CLK3-224ENST00000568605 VPS28Q9UK41 221 aa13.37□□□□□ -0.27
CLK3-224ENST00000568605 GMEB2Q9UKD1 530 aa13.37□□□□□ -0.27
CLK3-224ENST00000568605 OTOGLQ3ZCN5 2332 aa13.36□□□□□ -0.27
CLK3-224ENST00000568605 ANTXRLA6NF34 631 aa13.36□□□□□ -0.27
CLK3-224ENST00000568605 TMEM191CA6NGB0 347 aa13.36□□□□□ -0.27
CLK3-224ENST00000568605 GOLGA6L6A8MZA4 724 aa13.36□□□□□ -0.27
CLK3-224ENST00000568605 I6L893 689 aaPredicted RBP13.36□□□□□ -0.27
CLK3-224ENST00000568605 PRPSAP2O60256 369 aa13.36□□□□□ -0.27
CLK3-224ENST00000568605 OR1E1P30953 314 aa13.36□□□□□ -0.27
CLK3-224ENST00000568605 HTR7P34969 479 aa13.36□□□□□ -0.27
CLK3-224ENST00000568605 ETFBP38117 255 aa13.36□□□□□ -0.27
CLK3-224ENST00000568605 MRE11P49959 708 aa13.36□□□□□ -0.27
CLK3-224ENST00000568605 ZNF75DP51815 510 aa13.36□□□□□ -0.27
CLK3-224ENST00000568605 ADKP55263 362 aaKnown RBP13.36□□□□□ -0.27
CLK3-224ENST00000568605 KRT83P78385 493 aa13.36□□□□□ -0.27
CLK3-224ENST00000568605 GFPT1Q06210 699 aaPredicted RBP13.36□□□□□ -0.27
CLK3-224ENST00000568605 ELF2Q15723 593 aa13.36□□□□□ -0.27
CLK3-224ENST00000568605 FSCBQ5H9T9 825 aa13.36□□□□□ -0.27
CLK3-224ENST00000568605 SH3PXD2AQ5TCZ1 1133 aa13.36□□□□□ -0.27
CLK3-224ENST00000568605 LAIR1Q6GTX8 287 aa13.36□□□□□ -0.27
CLK3-224ENST00000568605 CXorf57Q6NSI4 855 aaKnown RBP13.36□□□□□ -0.27
CLK3-224ENST00000568605 ZNF783Q6ZMS7 281 aa13.36□□□□□ -0.27
CLK3-224ENST00000568605 CYB5D2Q8WUJ1 264 aa13.36□□□□□ -0.27
CLK3-224ENST00000568605 SORCS1Q8WY21 1168 aa13.36□□□□□ -0.27
CLK3-224ENST00000568605 PHOX2BQ99453 314 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms