RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 ADAM9Q13443 819 aa17.54■□□□□ 0.4
VPS29-204ENST00000548259 C9orf64Q5T6V5 341 aa17.54■□□□□ 0.4
VPS29-204ENST00000548259 SFMBT2Q5VUG0 894 aa17.54■□□□□ 0.4
VPS29-204ENST00000548259 ATL3Q6DD88 541 aa17.54■□□□□ 0.4
VPS29-204ENST00000548259 MSANTD2Q6P1R3 559 aa17.54■□□□□ 0.4
VPS29-204ENST00000548259 BHLHA9Q7RTU4 235 aa17.54■□□□□ 0.4
VPS29-204ENST00000548259 SCML4Q8N228 414 aa17.54■□□□□ 0.4
VPS29-204ENST00000548259 CARNMT1Q8N4J0 409 aa17.54■□□□□ 0.4
VPS29-204ENST00000548259 DCBLD1Q8N8Z6 715 aa17.54■□□□□ 0.4
VPS29-204ENST00000548259 KCTD13Q8WZ19 329 aa17.54■□□□□ 0.4
VPS29-204ENST00000548259 NDRG1Q92597 394 aaKnown RBP17.54■□□□□ 0.4
VPS29-204ENST00000548259 KDM4CQ9H3R0 1056 aa17.54■□□□□ 0.4
VPS29-204ENST00000548259 MTG2Q9H4K7 406 aa17.54■□□□□ 0.4
VPS29-204ENST00000548259 EBF2Q9HAK2 575 aa17.54■□□□□ 0.4
VPS29-204ENST00000548259 FOXD4L1Q9NU39 408 aa17.54■□□□□ 0.4
VPS29-204ENST00000548259 CFAP45Q9UL16 551 aa17.54■□□□□ 0.4
VPS29-204ENST00000548259 KIAA1257Q9ULG3 409 aa17.54■□□□□ 0.4
VPS29-204ENST00000548259 PCDHA7Q9UN72 937 aa17.54■□□□□ 0.4
VPS29-204ENST00000548259 DMTF1Q9Y222 760 aa17.54■□□□□ 0.4
VPS29-204ENST00000548259 PTPRQQ9UMZ3 2332 aa17.54■□□□□ 0.4
VPS29-204ENST00000548259 CFAP46Q8IYW2 2715 aa17.54■□□□□ 0.4
VPS29-204ENST00000548259 SGSHP51688 502 aa17.53■□□□□ 0.4
VPS29-204ENST00000548259 ADPRHP54922 357 aa17.53■□□□□ 0.4
VPS29-204ENST00000548259 TBX4P57082 545 aa17.53■□□□□ 0.4
VPS29-204ENST00000548259 DAB2P98082 770 aa17.53■□□□□ 0.4
VPS29-204ENST00000548259 ECT2LQ008S8 904 aa17.53■□□□□ 0.4
VPS29-204ENST00000548259 KCNH2Q12809 1159 aa17.53■□□□□ 0.4
VPS29-204ENST00000548259 BNIP3Q12983 259 aa17.53■□□□□ 0.4
VPS29-204ENST00000548259 KCNJ12Q14500 433 aa17.53■□□□□ 0.4
VPS29-204ENST00000548259 ELAVL3Q14576 367 aaKnown RBP17.53■□□□□ 0.4
VPS29-204ENST00000548259 STAT4Q14765 748 aa17.53■□□□□ 0.4
VPS29-204ENST00000548259 DSG4Q86SJ6 1040 aa17.53■□□□□ 0.4
VPS29-204ENST00000548259 WFDC5Q8TCV5 224 aa17.53■□□□□ 0.4
VPS29-204ENST00000548259 IRGQQ8WZA9 623 aa17.53■□□□□ 0.4
VPS29-204ENST00000548259 TATDN2Q93075 761 aa17.53■□□□□ 0.4
VPS29-204ENST00000548259 ZNF578Q96N58 590 aaPredicted RBP17.53■□□□□ 0.4
VPS29-204ENST00000548259 EVA1BQ9NVM1 165 aa17.53■□□□□ 0.4
VPS29-204ENST00000548259 ERVW-1Q9UQF0 538 aa17.53■□□□□ 0.4
VPS29-204ENST00000548259 SHROOM3Q8TF72 1996 aa17.52■□□□□ 0.4
VPS29-204ENST00000548259 IL1BP01584 269 aa17.52■□□□□ 0.4
VPS29-204ENST00000548259 IGLV3-27P01718 113 aa17.52■□□□□ 0.4
VPS29-204ENST00000548259 LCP1P13796 627 aa17.52■□□□□ 0.4
VPS29-204ENST00000548259 DAOAP59103 153 aa17.52■□□□□ 0.4
VPS29-204ENST00000548259 NUCB2P80303 420 aa17.52■□□□□ 0.4
VPS29-204ENST00000548259 INSM1Q01101 510 aaPredicted RBP17.52■□□□□ 0.4
VPS29-204ENST00000548259 FAM133BQ5BKY9 247 aaKnown RBP17.52■□□□□ 0.4
VPS29-204ENST00000548259 KDM7AQ6ZMT4 941 aa17.52■□□□□ 0.4
VPS29-204ENST00000548259 ERICH1Q86X53 443 aa17.52■□□□□ 0.4
VPS29-204ENST00000548259 MYO19Q96H55 970 aa17.52■□□□□ 0.4
VPS29-204ENST00000548259 MAST4O15021 2626 aa17.52■□□□□ 0.4
VPS29-204ENST00000548259 GOLGA6L7A0A1B0GV03 622 aa17.51■□□□□ 0.39
VPS29-204ENST00000548259 TTC34A8MYJ7 566 aa17.51■□□□□ 0.39
VPS29-204ENST00000548259 TULP2O00295 520 aa17.51■□□□□ 0.39
VPS29-204ENST00000548259 SLC7A4O43246 635 aa17.51■□□□□ 0.39
VPS29-204ENST00000548259 LATO43561 262 aa17.51■□□□□ 0.39
VPS29-204ENST00000548259 ACTN4O43707 911 aaKnown RBP17.51■□□□□ 0.39
VPS29-204ENST00000548259 MT-CO3P00414 261 aa17.51■□□□□ 0.39
VPS29-204ENST00000548259 EPB41P11171 864 aaKnown RBP17.51■□□□□ 0.39
VPS29-204ENST00000548259 VDRP11473 427 aa17.51■□□□□ 0.39
VPS29-204ENST00000548259 ZNF211Q13398 564 aaPredicted RBP17.51■□□□□ 0.39
VPS29-204ENST00000548259 FOXD4L6Q3SYB3 417 aaPredicted RBP17.51■□□□□ 0.39
VPS29-204ENST00000548259 PITRM1Q5JRX3 1037 aa17.51■□□□□ 0.39
VPS29-204ENST00000548259 FAM46CQ5VWP2 391 aa17.51■□□□□ 0.39
VPS29-204ENST00000548259 FOXD4L3Q6VB84 417 aaPredicted RBP17.51■□□□□ 0.39
VPS29-204ENST00000548259 AADATQ8N5Z0 425 aa17.51■□□□□ 0.39
VPS29-204ENST00000548259 UBA3Q8TBC4 463 aa17.51■□□□□ 0.39
VPS29-204ENST00000548259 TMEM131Q92545 1883 aa17.51■□□□□ 0.39
VPS29-204ENST00000548259 MRGPRX3Q96LB0 322 aa17.51■□□□□ 0.39
VPS29-204ENST00000548259 SERPINB11Q96P15 392 aa17.51■□□□□ 0.39
VPS29-204ENST00000548259 ITIH6Q6UXX5 1313 aa17.5■□□□□ 0.39
VPS29-204ENST00000548259 ALPPL2P10696 532 aa17.5■□□□□ 0.39
VPS29-204ENST00000548259 MZF1P28698 734 aaPredicted RBP17.5■□□□□ 0.39
VPS29-204ENST00000548259 SLC6A4P31645 630 aa17.5■□□□□ 0.39
VPS29-204ENST00000548259 SULT2A1Q06520 285 aa17.5■□□□□ 0.39
VPS29-204ENST00000548259 CUL2Q13617 745 aa17.5■□□□□ 0.39
VPS29-204ENST00000548259 SLC12A1Q13621 1099 aa17.5■□□□□ 0.39
VPS29-204ENST00000548259 PROX2Q3B8N5 592 aa17.5■□□□□ 0.39
VPS29-204ENST00000548259 SETMARQ53H47 684 aaPredicted RBP17.5■□□□□ 0.39
VPS29-204ENST00000548259 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP17.5■□□□□ 0.39
VPS29-204ENST00000548259 STK40Q8N2I9 435 aa17.5■□□□□ 0.39
VPS29-204ENST00000548259 SEMA4DQ92854 862 aa17.5■□□□□ 0.39
VPS29-204ENST00000548259 LMLNQ96KR4 655 aa17.5■□□□□ 0.39
VPS29-204ENST00000548259 DEPDC7Q96QD5 511 aa17.5■□□□□ 0.39
VPS29-204ENST00000548259 SPAG5Q96R06 1193 aa17.5■□□□□ 0.39
VPS29-204ENST00000548259 PPP1R9BQ96SB3 815 aa17.5■□□□□ 0.39
VPS29-204ENST00000548259 FAM129BQ96TA1 746 aa17.5■□□□□ 0.39
VPS29-204ENST00000548259 INTS6Q9UL03 887 aaKnown RBP17.5■□□□□ 0.39
VPS29-204ENST00000548259 PRAMEF26H0Y7S4 382 aa17.49■□□□□ 0.39
VPS29-204ENST00000548259 K7ELQ4 463 aaPredicted RBP17.49■□□□□ 0.39
VPS29-204ENST00000548259 WNT9AO14904 365 aa17.49■□□□□ 0.39
VPS29-204ENST00000548259 FBXO21O94952 628 aa17.49■□□□□ 0.39
VPS29-204ENST00000548259 LUC7L3O95232 432 aaKnown RBP17.49■□□□□ 0.39
VPS29-204ENST00000548259 LTFP02788 710 aa17.49■□□□□ 0.39
VPS29-204ENST00000548259 ERVPABLB-1P60509 514 aa17.49■□□□□ 0.39
VPS29-204ENST00000548259 RPS24P62847 133 aaKnown RBP17.49■□□□□ 0.39
VPS29-204ENST00000548259 NNTQ13423 1086 aa17.49■□□□□ 0.39
VPS29-204ENST00000548259 PKDCCQ504Y2 493 aa17.49■□□□□ 0.39
VPS29-204ENST00000548259 FOXD4L5Q5VV16 416 aaPredicted RBP17.49■□□□□ 0.39
VPS29-204ENST00000548259 GUF1Q8N442 669 aaKnown RBP17.49■□□□□ 0.39
VPS29-204ENST00000548259 FOXD4L4Q8WXT5 416 aaPredicted RBP17.49■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms