RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-213ENST00000542641 CHST9Q7L1S5 443 aa11.94□□□□□ -0.5
YBX3-213ENST00000542641 TFAP2DQ7Z6R9 452 aa11.94□□□□□ -0.5
YBX3-213ENST00000542641 MFN1Q8IWA4 741 aa11.94□□□□□ -0.5
YBX3-213ENST00000542641 SLC35F6Q8N357 371 aa11.94□□□□□ -0.5
YBX3-213ENST00000542641 EXD1Q8NHP7 514 aa11.94□□□□□ -0.5
YBX3-213ENST00000542641 RBM41Q96IZ5 413 aaKnown RBP11.94□□□□□ -0.5
YBX3-213ENST00000542641 CSPG4P5Q96PW8 444 aa11.94□□□□□ -0.5
YBX3-213ENST00000542641 RETREG1Q9H6L5 497 aa11.94□□□□□ -0.5
YBX3-213ENST00000542641 C8orf33Q9H7E9 229 aaPredicted RBP11.94□□□□□ -0.5
YBX3-213ENST00000542641 CATSPERBQ9H7T0 1116 aa11.94□□□□□ -0.5
YBX3-213ENST00000542641 RCOR3Q9P2K3 495 aaPredicted RBP11.94□□□□□ -0.5
YBX3-213ENST00000542641 MUTYHQ9UIF7 546 aa11.94□□□□□ -0.5
YBX3-213ENST00000542641 JRKLQ9Y4A0 524 aa11.94□□□□□ -0.5
YBX3-213ENST00000542641 PIAS3Q9Y6X2 628 aa11.94□□□□□ -0.5
YBX3-213ENST00000542641 C3orf70A6NLC5 250 aaPredicted RBP11.93□□□□□ -0.5
YBX3-213ENST00000542641 SPECC1L-ADORA2AF8WAN1 911 aa11.93□□□□□ -0.5
YBX3-213ENST00000542641 FGF10O15520 208 aaPredicted RBP11.93□□□□□ -0.5
YBX3-213ENST00000542641 DDX3YO15523 660 aaKnown RBP11.93□□□□□ -0.5
YBX3-213ENST00000542641 CACNG3O60359 315 aa11.93□□□□□ -0.5
YBX3-213ENST00000542641 LUC7L3O95232 432 aaKnown RBP11.93□□□□□ -0.5
YBX3-213ENST00000542641 GLULP15104 373 aa11.93□□□□□ -0.5
YBX3-213ENST00000542641 OR1E1P30953 314 aa11.93□□□□□ -0.5
YBX3-213ENST00000542641 HOXC13P31276 330 aa11.93□□□□□ -0.5
YBX3-213ENST00000542641 CETN2P41208 172 aa11.93□□□□□ -0.5
YBX3-213ENST00000542641 SLC6A11P48066 632 aa11.93□□□□□ -0.5
YBX3-213ENST00000542641 SOX9P48436 509 aa11.93□□□□□ -0.5
YBX3-213ENST00000542641 GAB4Q2WGN9 574 aa11.93□□□□□ -0.5
YBX3-213ENST00000542641 ANKRD20A8PQ5CZ79 823 aa11.93□□□□□ -0.5
YBX3-213ENST00000542641 RALGPS2Q86X27 583 aaPredicted RBP11.93□□□□□ -0.5
YBX3-213ENST00000542641 CCDC50Q8IVM0 306 aa11.93□□□□□ -0.5
YBX3-213ENST00000542641 ZNF557Q8N988 423 aaPredicted RBP11.93□□□□□ -0.5
YBX3-213ENST00000542641 FIBINQ8TAL6 211 aa11.93□□□□□ -0.5
YBX3-213ENST00000542641 TSC1Q92574 1164 aa11.93□□□□□ -0.5
YBX3-213ENST00000542641 ALG3Q92685 438 aa11.93□□□□□ -0.5
YBX3-213ENST00000542641 ZNF670Q9BS34 389 aa11.93□□□□□ -0.5
YBX3-213ENST00000542641 MAK16Q9BXY0 300 aaKnown RBP11.93□□□□□ -0.5
YBX3-213ENST00000542641 SLC2A11Q9BYW1 496 aa11.93□□□□□ -0.5
YBX3-213ENST00000542641 DNAJC17Q9NVM6 304 aaKnown RBP11.93□□□□□ -0.5
YBX3-213ENST00000542641 DONSONQ9NYP3 566 aa11.93□□□□□ -0.5
YBX3-213ENST00000542641 DEC1Q9P2X7 70 aa11.93□□□□□ -0.5
YBX3-213ENST00000542641 FBXL21Q9UKT6 434 aa11.93□□□□□ -0.5
YBX3-213ENST00000542641 CLEC4EQ9ULY5 219 aa11.93□□□□□ -0.5
YBX3-213ENST00000542641 NEU3Q9UQ49 428 aa11.93□□□□□ -0.5
YBX3-213ENST00000542641 PALM2-AKAP2B1ALY0 433 aaPredicted RBP11.92□□□□□ -0.5
YBX3-213ENST00000542641 ENC1O14682 589 aa11.92□□□□□ -0.5
YBX3-213ENST00000542641 TULP3O75386 442 aa11.92□□□□□ -0.5
YBX3-213ENST00000542641 PYGMP11217 842 aa11.92□□□□□ -0.5
YBX3-213ENST00000542641 ERCC2P18074 760 aa11.92□□□□□ -0.5
YBX3-213ENST00000542641 AMPD1P23109 780 aa11.92□□□□□ -0.5
YBX3-213ENST00000542641 CTHP32929 405 aa11.92□□□□□ -0.5
YBX3-213ENST00000542641 EIF2DP41214 584 aaKnown RBP11.92□□□□□ -0.5
YBX3-213ENST00000542641 MAPKAPK2P49137 400 aa11.92□□□□□ -0.5
YBX3-213ENST00000542641 DGKGP49619 791 aa11.92□□□□□ -0.5
YBX3-213ENST00000542641 DPYSQ14117 519 aa11.92□□□□□ -0.5
YBX3-213ENST00000542641 C6orf118Q5T5N4 469 aa11.92□□□□□ -0.5
YBX3-213ENST00000542641 RNF43Q68DV7 783 aa11.92□□□□□ -0.5
YBX3-213ENST00000542641 MFSD7Q6UXD7 560 aa11.92□□□□□ -0.5
YBX3-213ENST00000542641 SPOCD1Q6ZMY3 1216 aa11.92□□□□□ -0.5
YBX3-213ENST00000542641 NLRP14Q86W24 1093 aa11.92□□□□□ -0.5
YBX3-213ENST00000542641 C12orf40Q86WS4 652 aa11.92□□□□□ -0.5
YBX3-213ENST00000542641 VSIG1Q86XK7 387 aa11.92□□□□□ -0.5
YBX3-213ENST00000542641 ETFBKMTQ8IXQ9 262 aa11.92□□□□□ -0.5
YBX3-213ENST00000542641 RTL3Q8N8U3 475 aaKnown RBP11.92□□□□□ -0.5
YBX3-213ENST00000542641 PCDH19Q8TAB3 1148 aa11.92□□□□□ -0.5
YBX3-213ENST00000542641 EXOC4Q96A65 974 aa11.92□□□□□ -0.5
YBX3-213ENST00000542641 CHFRQ96EP1 664 aa11.92□□□□□ -0.5
YBX3-213ENST00000542641 RNF157Q96PX1 679 aa11.92□□□□□ -0.5
YBX3-213ENST00000542641 PNKPQ96T60 521 aa11.92□□□□□ -0.5
YBX3-213ENST00000542641 TLR10Q9BXR5 811 aa11.92□□□□□ -0.5
YBX3-213ENST00000542641 ARHGEF4Q9NR80 690 aa11.92□□□□□ -0.5
YBX3-213ENST00000542641 TMEM248Q9NWD8 314 aa11.92□□□□□ -0.5
YBX3-213ENST00000542641 WNT16Q9UBV4 365 aa11.92□□□□□ -0.5
YBX3-213ENST00000542641 DNAI1Q9UI46 699 aa11.92□□□□□ -0.5
YBX3-213ENST00000542641 FBXO10Q9UK96 956 aa11.92□□□□□ -0.5
YBX3-213ENST00000542641 CA14Q9ULX7 337 aa11.92□□□□□ -0.5
YBX3-213ENST00000542641 TBC1D30Q9Y2I9 924 aa11.92□□□□□ -0.5
YBX3-213ENST00000542641 MYO10Q9HD67 2058 aa11.91□□□□□ -0.5
YBX3-213ENST00000542641 KIF26AQ9ULI4 1882 aaPredicted RBP11.91□□□□□ -0.5
YBX3-213ENST00000542641 WASH4PA8MWX3 477 aa11.91□□□□□ -0.5
YBX3-213ENST00000542641 ZNF487B1APH4 448 aa11.91□□□□□ -0.5
YBX3-213ENST00000542641 KCNK3O14649 394 aa11.91□□□□□ -0.5
YBX3-213ENST00000542641 TRIM24O15164 1050 aa11.91□□□□□ -0.5
YBX3-213ENST00000542641 RHOCP08134 193 aa11.91□□□□□ -0.5
YBX3-213ENST00000542641 CISD3P0C7P0 127 aa11.91□□□□□ -0.5
YBX3-213ENST00000542641 KRT10P13645 584 aa11.91□□□□□ -0.5
YBX3-213ENST00000542641 OPRD1P41143 372 aa11.91□□□□□ -0.5
YBX3-213ENST00000542641 CDKN2BP42772 138 aa11.91□□□□□ -0.5
YBX3-213ENST00000542641 GALK1P51570 392 aa11.91□□□□□ -0.5
YBX3-213ENST00000542641 OXCT1P55809 520 aa11.91□□□□□ -0.5
YBX3-213ENST00000542641 COPS2P61201 443 aa11.91□□□□□ -0.5
YBX3-213ENST00000542641 FOXK1P85037 733 aa11.91□□□□□ -0.5
YBX3-213ENST00000542641 ZNF211Q13398 564 aaPredicted RBP11.91□□□□□ -0.5
YBX3-213ENST00000542641 LLGL1Q15334 1064 aa11.91□□□□□ -0.5
YBX3-213ENST00000542641 MLF2Q15773 248 aaPredicted RBP11.91□□□□□ -0.5
YBX3-213ENST00000542641 PREPLQ4J6C6 727 aaPredicted RBP11.91□□□□□ -0.5
YBX3-213ENST00000542641 TFDP3Q5H9I0 405 aa11.91□□□□□ -0.5
YBX3-213ENST00000542641 FSCBQ5H9T9 825 aa11.91□□□□□ -0.5
YBX3-213ENST00000542641 KAZNQ674X7 775 aa11.91□□□□□ -0.5
YBX3-213ENST00000542641 NAIF1Q69YI7 327 aaPredicted RBP11.91□□□□□ -0.5
YBX3-213ENST00000542641 GRAMD4Q6IC98 578 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms