RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 TGM5O43548 720 aa8.93□□□□□ -0.98
LIMCH1-209ENST00000509277 SNX3O60493 162 aa8.93□□□□□ -0.98
LIMCH1-209ENST00000509277 OAZ2O95190 189 aa8.93□□□□□ -0.98
LIMCH1-209ENST00000509277 MIPP30301 263 aa8.93□□□□□ -0.98
LIMCH1-209ENST00000509277 HSPA9P38646 679 aaKnown RBP8.93□□□□□ -0.98
LIMCH1-209ENST00000509277 MRPS5P82675 430 aaKnown RBP8.93□□□□□ -0.98
LIMCH1-209ENST00000509277 MAP7Q14244 749 aa8.93□□□□□ -0.98
LIMCH1-209ENST00000509277 SLMAPQ14BN4 828 aa8.93□□□□□ -0.98
LIMCH1-209ENST00000509277 SYCP2LQ5T4T6 812 aa8.93□□□□□ -0.98
LIMCH1-209ENST00000509277 TMC3Q7Z5M5 1100 aa8.93□□□□□ -0.98
LIMCH1-209ENST00000509277 RIBC1Q8N443 379 aaPredicted RBP8.93□□□□□ -0.98
LIMCH1-209ENST00000509277 KREMEN2Q8NCW0 462 aa8.93□□□□□ -0.98
LIMCH1-209ENST00000509277 OLIG1Q8TAK6 271 aa8.93□□□□□ -0.98
LIMCH1-209ENST00000509277 C11orf84Q9BUA3 381 aaPredicted RBP8.93□□□□□ -0.98
LIMCH1-209ENST00000509277 MAK16Q9BXY0 300 aaKnown RBP8.93□□□□□ -0.98
LIMCH1-209ENST00000509277 LHX5Q9H2C1 402 aa8.93□□□□□ -0.98
LIMCH1-209ENST00000509277 ASNSD1Q9NWL6 643 aa8.93□□□□□ -0.98
LIMCH1-209ENST00000509277 SDK1Q7Z5N4 2213 aa8.93□□□□□ -0.98
LIMCH1-209ENST00000509277 SLC12A8A0AV02 714 aa8.92□□□□□ -0.98
LIMCH1-209ENST00000509277 LCA5LO95447 670 aa8.92□□□□□ -0.98
LIMCH1-209ENST00000509277 CYP11A1P05108 521 aa8.92□□□□□ -0.98
LIMCH1-209ENST00000509277 CYP1A2P05177 515 aa8.92□□□□□ -0.98
LIMCH1-209ENST00000509277 GABRR2P28476 465 aa8.92□□□□□ -0.98
LIMCH1-209ENST00000509277 ACADSBP45954 432 aa8.92□□□□□ -0.98
LIMCH1-209ENST00000509277 YWHAGP61981 247 aaKnown RBP eCLIP8.92□□□□□ -0.98
LIMCH1-209ENST00000509277 MMRN1Q13201 1228 aa8.92□□□□□ -0.98
LIMCH1-209ENST00000509277 GPR17Q13304 367 aa8.92□□□□□ -0.98
LIMCH1-209ENST00000509277 SMAD1Q15797 465 aaKnown RBP8.92□□□□□ -0.98
LIMCH1-209ENST00000509277 KBTBD12Q3ZCT8 623 aa8.92□□□□□ -0.98
LIMCH1-209ENST00000509277 PPM1LQ5SGD2 360 aa8.92□□□□□ -0.98
LIMCH1-209ENST00000509277 PRUNE1Q86TP1 453 aa8.92□□□□□ -0.98
LIMCH1-209ENST00000509277 HS6ST3Q8IZP7 471 aa8.92□□□□□ -0.98
LIMCH1-209ENST00000509277 PYROXD2Q8N2H3 581 aa8.92□□□□□ -0.98
LIMCH1-209ENST00000509277 ZNF461Q8TAF7 563 aa8.92□□□□□ -0.98
LIMCH1-209ENST00000509277 C1orf54Q8WWF1 131 aa8.92□□□□□ -0.98
LIMCH1-209ENST00000509277 ALG3Q92685 438 aa8.92□□□□□ -0.98
LIMCH1-209ENST00000509277 KHSRPQ92945 711 aaKnown RBP eCLIP8.92□□□□□ -0.98
LIMCH1-209ENST00000509277 MPP4Q96JB8 637 aa8.92□□□□□ -0.98
LIMCH1-209ENST00000509277 SIKE1Q9BRV8 207 aa8.92□□□□□ -0.98
LIMCH1-209ENST00000509277 EMILIN2Q9BXX0 1053 aa8.92□□□□□ -0.98
LIMCH1-209ENST00000509277 CCSER2Q9H7U1 834 aa8.92□□□□□ -0.98
LIMCH1-209ENST00000509277 NMUR1Q9HB89 426 aa8.92□□□□□ -0.98
LIMCH1-209ENST00000509277 NMRK1Q9NWW6 199 aa8.92□□□□□ -0.98
LIMCH1-209ENST00000509277 ARHGEF38Q9NXL2 777 aa8.92□□□□□ -0.98
LIMCH1-209ENST00000509277 YIPF1Q9Y548 306 aa8.92□□□□□ -0.98
LIMCH1-209ENST00000509277 A0A1W2PRU2 124 aa8.92□□□□□ -0.98
LIMCH1-209ENST00000509277 GYG2O15488 501 aa8.92□□□□□ -0.98
LIMCH1-209ENST00000509277 PJA2O43164 708 aa8.92□□□□□ -0.98
LIMCH1-209ENST00000509277 USP1O94782 785 aa8.92□□□□□ -0.98
LIMCH1-209ENST00000509277 IFNB1P01574 187 aa8.92□□□□□ -0.98
LIMCH1-209ENST00000509277 CALB2P22676 271 aa8.92□□□□□ -0.98
LIMCH1-209ENST00000509277 PAX3P23760 479 aa8.92□□□□□ -0.98
LIMCH1-209ENST00000509277 CCR3P51677 355 aa8.92□□□□□ -0.98
LIMCH1-209ENST00000509277 EPHB3P54753 998 aa8.92□□□□□ -0.98
LIMCH1-209ENST00000509277 RPL10AP62906 217 aaKnown RBP8.92□□□□□ -0.98
LIMCH1-209ENST00000509277 THOC5Q13769 683 aaKnown RBP8.92□□□□□ -0.98
LIMCH1-209ENST00000509277 ZNF268Q14587 947 aaPredicted RBP8.92□□□□□ -0.98
LIMCH1-209ENST00000509277 KYNUQ16719 465 aa8.92□□□□□ -0.98
LIMCH1-209ENST00000509277 EFHC1Q5JVL4 640 aa8.92□□□□□ -0.98
LIMCH1-209ENST00000509277 RFWD3Q6PCD5 774 aa8.92□□□□□ -0.98
LIMCH1-209ENST00000509277 C1orf228Q6PIY5 440 aa8.92□□□□□ -0.98
LIMCH1-209ENST00000509277 ADGRD2Q7Z7M1 963 aa8.92□□□□□ -0.98
LIMCH1-209ENST00000509277 SPPL2BQ8TCT7 592 aa8.92□□□□□ -0.98
LIMCH1-209ENST00000509277 ATG4AQ8WYN0 398 aa8.92□□□□□ -0.98
LIMCH1-209ENST00000509277 MYLK2Q9H1R3 596 aa8.92□□□□□ -0.98
LIMCH1-209ENST00000509277 RNPEPL1Q9HAU8 725 aa8.92□□□□□ -0.98
LIMCH1-209ENST00000509277 WDR35Q9P2L0 1181 aa8.92□□□□□ -0.98
LIMCH1-209ENST00000509277 STAP1Q9ULZ2 295 aa8.92□□□□□ -0.98
LIMCH1-209ENST00000509277 ARL2BPQ9Y2Y0 163 aa8.92□□□□□ -0.98
LIMCH1-209ENST00000509277 TMEM191CA6NGB0 347 aa8.92□□□□□ -0.98
LIMCH1-209ENST00000509277 SMAPO00193 183 aa8.92□□□□□ -0.98
LIMCH1-209ENST00000509277 PROSCO94903 275 aa8.92□□□□□ -0.98
LIMCH1-209ENST00000509277 CD48P09326 243 aa8.92□□□□□ -0.98
LIMCH1-209ENST00000509277 KITP10721 976 aa8.92□□□□□ -0.98
LIMCH1-209ENST00000509277 CETN2P41208 172 aa8.92□□□□□ -0.98
LIMCH1-209ENST00000509277 TAP1Q03518 808 aa8.92□□□□□ -0.98
LIMCH1-209ENST00000509277 PTP4A2Q12974 167 aa8.92□□□□□ -0.98
LIMCH1-209ENST00000509277 CUL1Q13616 776 aa8.92□□□□□ -0.98
LIMCH1-209ENST00000509277 TXNDC8Q6A555 127 aa8.92□□□□□ -0.98
LIMCH1-209ENST00000509277 TRNP1Q6NT89 227 aa8.92□□□□□ -0.98
LIMCH1-209ENST00000509277 OLFML1Q6UWY5 402 aa8.92□□□□□ -0.98
LIMCH1-209ENST00000509277 SDCCAG8Q86SQ7 713 aaPredicted RBP8.92□□□□□ -0.98
LIMCH1-209ENST00000509277 DDX53Q86TM3 631 aaKnown RBP8.92□□□□□ -0.98
LIMCH1-209ENST00000509277 NT5DC3Q86UY8 548 aa8.92□□□□□ -0.98
LIMCH1-209ENST00000509277 ELMOD1Q8N336 334 aa8.92□□□□□ -0.98
LIMCH1-209ENST00000509277 SPPL3Q8TCT6 385 aa8.92□□□□□ -0.98
LIMCH1-209ENST00000509277 TIFAQ96CG3 184 aa8.92□□□□□ -0.98
LIMCH1-209ENST00000509277 GKN1Q9NS71 199 aa8.92□□□□□ -0.98
LIMCH1-209ENST00000509277 STOML1Q9UBI4 398 aa8.92□□□□□ -0.98
LIMCH1-209ENST00000509277 MTRRQ9UBK8 725 aa8.92□□□□□ -0.98
LIMCH1-209ENST00000509277 USP18Q9UMW8 372 aa8.92□□□□□ -0.98
LIMCH1-209ENST00000509277 MAGEA13PA6NCF6 341 aa8.91□□□□□ -0.98
LIMCH1-209ENST00000509277 SIGLEC16A6NMB1 481 aa8.91□□□□□ -0.98
LIMCH1-209ENST00000509277 SLC38A8A6NNN8 435 aa8.91□□□□□ -0.98
LIMCH1-209ENST00000509277 PYGMP11217 842 aa8.91□□□□□ -0.98
LIMCH1-209ENST00000509277 RARGP13631 454 aa8.91□□□□□ -0.98
LIMCH1-209ENST00000509277 DAOAP59103 153 aa8.91□□□□□ -0.98
LIMCH1-209ENST00000509277 KDSRQ06136 332 aa8.91□□□□□ -0.98
LIMCH1-209ENST00000509277 KPNB1Q14974 876 aaKnown RBP8.91□□□□□ -0.98
LIMCH1-209ENST00000509277 GRAMD1BQ3KR37 738 aa8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms