RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 RNF219Q5W0B1 726 aaPredicted RBP17.58■□□□□ 0.4
VPS29-204ENST00000548259 KRT39Q6A163 491 aa17.58■□□□□ 0.4
VPS29-204ENST00000548259 SND1Q7KZF4 910 aaKnown RBP eCLIP17.58■□□□□ 0.44e-6■■■□□ 14.7
VPS29-204ENST00000548259 HJURPQ8NCD3 748 aaPredicted RBP17.58■□□□□ 0.4
VPS29-204ENST00000548259 EDEM1Q92611 657 aa17.58■□□□□ 0.4
VPS29-204ENST00000548259 LGMNQ99538 433 aa17.58■□□□□ 0.4
VPS29-204ENST00000548259 NEUROG2Q9H2A3 272 aa17.58■□□□□ 0.4
VPS29-204ENST00000548259 SFMBT1Q9UHJ3 866 aa17.58■□□□□ 0.4
VPS29-204ENST00000548259 TRAF3IP3Q9Y228 551 aa17.58■□□□□ 0.4
VPS29-204ENST00000548259 CEP83Q9Y592 693 aa17.58■□□□□ 0.4
VPS29-204ENST00000548259 ZNF462Q96JM2 2506 aa17.57■□□□□ 0.4
VPS29-204ENST00000548259 ERVH48-1M5A8F1 160 aa17.57■□□□□ 0.4
VPS29-204ENST00000548259 BRINP1O60477 761 aa17.57■□□□□ 0.4
VPS29-204ENST00000548259 SIN3BO75182 1162 aa17.57■□□□□ 0.4
VPS29-204ENST00000548259 ADH1BP00325 375 aa17.57■□□□□ 0.4
VPS29-204ENST00000548259 SLC8A1P32418 973 aa17.57■□□□□ 0.4
VPS29-204ENST00000548259 CD70P32970 193 aa17.57■□□□□ 0.4
VPS29-204ENST00000548259 NUDT1P36639 197 aa17.57■□□□□ 0.4
VPS29-204ENST00000548259 RXRGP48443 463 aa17.57■□□□□ 0.4
VPS29-204ENST00000548259 RAD23BP54727 409 aa17.57■□□□□ 0.4
VPS29-204ENST00000548259 YWHAEP62258 255 aaKnown RBP17.57■□□□□ 0.4
VPS29-204ENST00000548259 CXADRP78310 365 aa17.57■□□□□ 0.4
VPS29-204ENST00000548259 PPP3CAQ08209 521 aa17.57■□□□□ 0.4
VPS29-204ENST00000548259 CCDC173Q0VFZ6 552 aa17.57■□□□□ 0.4
VPS29-204ENST00000548259 BST2Q10589 180 aaKnown RBP17.57■□□□□ 0.4
VPS29-204ENST00000548259 ARID5BQ14865 1188 aa17.57■□□□□ 0.4
VPS29-204ENST00000548259 GOLGA7BQ2TAP0 167 aa17.57■□□□□ 0.4
VPS29-204ENST00000548259 TBC1D25Q3MII6 688 aa17.57■□□□□ 0.4
VPS29-204ENST00000548259 PIK3R6Q5UE93 754 aa17.57■□□□□ 0.4
VPS29-204ENST00000548259 RESP18Q5W5W9 173 aa17.57■□□□□ 0.4
VPS29-204ENST00000548259 MMAAQ8IVH4 418 aaKnown RBP17.57■□□□□ 0.4
VPS29-204ENST00000548259 DHX40Q8IX18 779 aaKnown RBP17.57■□□□□ 0.4
VPS29-204ENST00000548259 SLC4A11Q8NBS3 891 aa17.57■□□□□ 0.4
VPS29-204ENST00000548259 ZNF248Q8NDW4 579 aa17.57■□□□□ 0.4
VPS29-204ENST00000548259 OR14C36Q8NHC7 312 aa17.57■□□□□ 0.4
VPS29-204ENST00000548259 FIBINQ8TAL6 211 aa17.57■□□□□ 0.4
VPS29-204ENST00000548259 TTC17Q96AE7 1141 aa17.57■□□□□ 0.4
VPS29-204ENST00000548259 COL5A1P20908 1838 aaPredicted RBP17.56■□□□□ 0.4
VPS29-204ENST00000548259 EDDM13A0A1B0GTR0 161 aa17.56■□□□□ 0.4
VPS29-204ENST00000548259 KLRC4O43908 158 aa17.56■□□□□ 0.4
VPS29-204ENST00000548259 WNT1P04628 370 aa17.56■□□□□ 0.4
VPS29-204ENST00000548259 SRPRAP08240 638 aaKnown RBP17.56■□□□□ 0.4
VPS29-204ENST00000548259 GOT1P17174 413 aa17.56■□□□□ 0.4
VPS29-204ENST00000548259 NNMTP40261 264 aa17.56■□□□□ 0.4
VPS29-204ENST00000548259 CLDN6P56747 220 aa17.56■□□□□ 0.4
VPS29-204ENST00000548259 NXPH1P58417 271 aa17.56■□□□□ 0.4
VPS29-204ENST00000548259 RHDQ02161 417 aa17.56■□□□□ 0.4
VPS29-204ENST00000548259 TLE3Q04726 772 aa17.56■□□□□ 0.4
VPS29-204ENST00000548259 ADIGQ0VDE8 80 aa17.56■□□□□ 0.4
VPS29-204ENST00000548259 OVGP1Q12889 678 aa17.56■□□□□ 0.4
VPS29-204ENST00000548259 CDH18Q13634 790 aa17.56■□□□□ 0.4
VPS29-204ENST00000548259 SHBQ15464 509 aa17.56■□□□□ 0.4
VPS29-204ENST00000548259 NFIL3Q16649 462 aa17.56■□□□□ 0.4
VPS29-204ENST00000548259 SGO2Q562F6 1265 aa17.56■□□□□ 0.4
VPS29-204ENST00000548259 PRPF39Q86UA1 669 aaKnown RBP17.56■□□□□ 0.4
VPS29-204ENST00000548259 GRAMD1CQ8IYS0 662 aa17.56■□□□□ 0.4
VPS29-204ENST00000548259 MFSD2AQ8NA29 543 aa17.56■□□□□ 0.4
VPS29-204ENST00000548259 FBXL13Q8NEE6 735 aa17.56■□□□□ 0.4
VPS29-204ENST00000548259 CNGB3Q9NQW8 809 aa17.56■□□□□ 0.4
VPS29-204ENST00000548259 STIM2Q9P246 746 aa17.56■□□□□ 0.4
VPS29-204ENST00000548259 USP25Q9UHP3 1055 aa17.56■□□□□ 0.4
VPS29-204ENST00000548259 TBC1D3DA0A087WVF3 549 aa17.55■□□□□ 0.4
VPS29-204ENST00000548259 TBC1D3IA0A087WXS9 549 aa17.55■□□□□ 0.4
VPS29-204ENST00000548259 TBC1D3EA0A087X179 549 aa17.55■□□□□ 0.4
VPS29-204ENST00000548259 TBC1D3KA0A087X1G2 549 aa17.55■□□□□ 0.4
VPS29-204ENST00000548259 A0A1W2PR77 199 aa17.55■□□□□ 0.4
VPS29-204ENST00000548259 TBC1D3FA6NER0 549 aaPredicted RBP17.55■□□□□ 0.4
VPS29-204ENST00000548259 TBC1D3LB9A6J9 549 aa17.55■□□□□ 0.4
VPS29-204ENST00000548259 TBC1D3HP0C7X1 549 aa17.55■□□□□ 0.4
VPS29-204ENST00000548259 SETSIPP0DME0 302 aa17.55■□□□□ 0.4
VPS29-204ENST00000548259 C5AR1P21730 350 aa17.55■□□□□ 0.4
VPS29-204ENST00000548259 CSKP41240 450 aa17.55■□□□□ 0.4
VPS29-204ENST00000548259 MXI1P50539 228 aa17.55■□□□□ 0.4
VPS29-204ENST00000548259 NUMA1Q14980 2115 aa17.55■□□□□ 0.4
VPS29-204ENST00000548259 TBC1D3GQ6DHY5 549 aa17.55■□□□□ 0.4
VPS29-204ENST00000548259 TBC1D3CQ6IPX1 549 aa17.55■□□□□ 0.4
VPS29-204ENST00000548259 NAPEPLDQ6IQ20 393 aa17.55■□□□□ 0.4
VPS29-204ENST00000548259 RFWD3Q6PCD5 774 aa17.55■□□□□ 0.4
VPS29-204ENST00000548259 IQCHQ86VS3 1027 aa17.55■□□□□ 0.4
VPS29-204ENST00000548259 SPACA3Q8IXA5 215 aa17.55■□□□□ 0.4
VPS29-204ENST00000548259 ZC3H3Q8IXZ2 948 aaKnown RBP17.55■□□□□ 0.4
VPS29-204ENST00000548259 TBC1D3Q8IZP1 549 aaPredicted RBP17.55■□□□□ 0.4
VPS29-204ENST00000548259 LSMEM2Q8N112 164 aa17.55■□□□□ 0.4
VPS29-204ENST00000548259 RFFLQ8WZ73 363 aa17.55■□□□□ 0.4
VPS29-204ENST00000548259 AZIN2Q96A70 460 aa17.55■□□□□ 0.4
VPS29-204ENST00000548259 WBP1Q96G27 269 aa17.55■□□□□ 0.4
VPS29-204ENST00000548259 PAGE5Q96GU1 130 aa17.55■□□□□ 0.4
VPS29-204ENST00000548259 RAB20Q9NX57 234 aa17.55■□□□□ 0.4
VPS29-204ENST00000548259 SERGEFQ9UGK8 458 aa17.55■□□□□ 0.4
VPS29-204ENST00000548259 SERTAD1Q9UHV2 236 aa17.55■□□□□ 0.4
VPS29-204ENST00000548259 TSPAN16Q9UKR8 245 aa17.55■□□□□ 0.4
VPS29-204ENST00000548259 YJEFN3A6XGL0 299 aa17.54■□□□□ 0.4
VPS29-204ENST00000548259 E7ENQ6 273 aa17.54■□□□□ 0.4
VPS29-204ENST00000548259 MSI1O43347 362 aaKnown RBP17.54■□□□□ 0.4
VPS29-204ENST00000548259 ACSL4O60488 711 aa17.54■□□□□ 0.4
VPS29-204ENST00000548259 CD19P15391 556 aa17.54■□□□□ 0.4
VPS29-204ENST00000548259 ACP1P24666 158 aa17.54■□□□□ 0.4
VPS29-204ENST00000548259 PSMD8P48556 350 aa17.54■□□□□ 0.4
VPS29-204ENST00000548259 PCBP4P57723 403 aaKnown RBP17.54■□□□□ 0.4
VPS29-204ENST00000548259 TMPRSS3P57727 454 aa17.54■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms