RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 DNAJA1P31689 397 aaKnown RBP10.69□□□□□ -0.7
LIG1-220ENST00000601091 VHLP40337 213 aa10.69□□□□□ -0.7
LIG1-220ENST00000601091 CPA2P48052 419 aa10.69□□□□□ -0.7
LIG1-220ENST00000601091 E2F2Q14209 437 aa10.69□□□□□ -0.7
LIG1-220ENST00000601091 HIC1Q14526 733 aa10.69□□□□□ -0.7
LIG1-220ENST00000601091 GOLGA7BQ2TAP0 167 aa10.69□□□□□ -0.7
LIG1-220ENST00000601091 ARL13BQ3SXY8 428 aa10.69□□□□□ -0.7
LIG1-220ENST00000601091 METTL21CQ5VZV1 264 aa10.69□□□□□ -0.7
LIG1-220ENST00000601091 DENND1BQ6P3S1 775 aa10.69□□□□□ -0.7
LIG1-220ENST00000601091 PHF6Q8IWS0 365 aaKnown RBP eCLIP10.69□□□□□ -0.7
LIG1-220ENST00000601091 SERPINI1Q99574 410 aa10.69□□□□□ -0.7
LIG1-220ENST00000601091 XPNPEP1Q9NQW7 623 aa10.69□□□□□ -0.7
LIG1-220ENST00000601091 POLIQ9UNA4 740 aa10.69□□□□□ -0.7
LIG1-220ENST00000601091 STRCP1A6NGW2 1772 aa10.69□□□□□ -0.7
LIG1-220ENST00000601091 KBTBD13C9JR72 458 aa10.69□□□□□ -0.7
LIG1-220ENST00000601091 EPHB2P29323 1055 aa10.69□□□□□ -0.7
LIG1-220ENST00000601091 HSD17B2P37059 387 aa10.69□□□□□ -0.7
LIG1-220ENST00000601091 SP140Q13342 867 aa10.69□□□□□ -0.7
LIG1-220ENST00000601091 CAPSQ13938 189 aa10.69□□□□□ -0.7
LIG1-220ENST00000601091 ZNF362Q5T0B9 420 aaPredicted RBP10.69□□□□□ -0.7
LIG1-220ENST00000601091 SYTL1Q8IYJ3 562 aa10.69□□□□□ -0.7
LIG1-220ENST00000601091 RMDN1Q96DB5 314 aa10.69□□□□□ -0.7
LIG1-220ENST00000601091 MTBPQ96DY7 904 aa10.69□□□□□ -0.7
LIG1-220ENST00000601091 ZNF570Q96NI8 536 aa10.69□□□□□ -0.7
LIG1-220ENST00000601091 TMEM120AQ9BXJ8 343 aa10.69□□□□□ -0.7
LIG1-220ENST00000601091 TCF7L2Q9NQB0 619 aa10.69□□□□□ -0.7
LIG1-220ENST00000601091 GMIPQ9P107 970 aa10.69□□□□□ -0.7
LIG1-220ENST00000601091 ZMYND8Q9ULU4 1186 aaPredicted RBP10.69□□□□□ -0.7
LIG1-220ENST00000601091 EDF1O60869 148 aaKnown RBP10.69□□□□□ -0.7
LIG1-220ENST00000601091 GPC4O75487 556 aa10.69□□□□□ -0.7
LIG1-220ENST00000601091 TCEA3O75764 348 aa10.69□□□□□ -0.7
LIG1-220ENST00000601091 TNFSF9P41273 254 aa10.69□□□□□ -0.7
LIG1-220ENST00000601091 SLC26A2P50443 739 aa10.69□□□□□ -0.7
LIG1-220ENST00000601091 TMEM132BQ14DG7 1078 aa10.69□□□□□ -0.7
LIG1-220ENST00000601091 SMAD1Q15797 465 aaKnown RBP10.69□□□□□ -0.7
LIG1-220ENST00000601091 LY6KQ17RY6 165 aa10.69□□□□□ -0.7
LIG1-220ENST00000601091 VSTM1Q6UX27 236 aa10.69□□□□□ -0.7
LIG1-220ENST00000601091 PGBD4Q96DM1 585 aa10.69□□□□□ -0.7
LIG1-220ENST00000601091 INIPQ9NRY2 104 aa10.69□□□□□ -0.7
LIG1-220ENST00000601091 DPP3Q9NY33 737 aa10.69□□□□□ -0.7
LIG1-220ENST00000601091 MRPL39Q9NYK5 338 aaKnown RBP10.69□□□□□ -0.7
LIG1-220ENST00000601091 TRAV6A0A075B6T7 132 aa10.68□□□□□ -0.7
LIG1-220ENST00000601091 TNFRSF10AO00220 468 aa10.68□□□□□ -0.7
LIG1-220ENST00000601091 CST3P01034 146 aaPredicted RBP10.68□□□□□ -0.7
LIG1-220ENST00000601091 C6orf222P0C671 652 aaPredicted RBP10.68□□□□□ -0.7
LIG1-220ENST00000601091 MTHFD1P11586 935 aaKnown RBP10.68□□□□□ -0.7
LIG1-220ENST00000601091 UBA1P22314 1058 aaKnown RBP10.68□□□□□ -0.7
LIG1-220ENST00000601091 SERPINB3P29508 390 aa10.68□□□□□ -0.7
LIG1-220ENST00000601091 SERPINB8P50452 374 aa10.68□□□□□ -0.7
LIG1-220ENST00000601091 FAAP100Q0VG06 881 aa10.68□□□□□ -0.7
LIG1-220ENST00000601091 GRAMD1BQ3KR37 738 aa10.68□□□□□ -0.7
LIG1-220ENST00000601091 EFHC2Q5JST6 749 aa10.68□□□□□ -0.7
LIG1-220ENST00000601091 MILR1Q7Z6M3 343 aa10.68□□□□□ -0.7
LIG1-220ENST00000601091 CCDC33Q8N5R6 958 aa10.68□□□□□ -0.7
LIG1-220ENST00000601091 FAM172AQ8WUF8 416 aa10.68□□□□□ -0.7
LIG1-220ENST00000601091 NKD2Q969F2 451 aaPredicted RBP10.68□□□□□ -0.7
LIG1-220ENST00000601091 TBC1D10AQ9BXI6 508 aa10.68□□□□□ -0.7
LIG1-220ENST00000601091 ACSS3Q9H6R3 686 aa10.68□□□□□ -0.7
LIG1-220ENST00000601091 GPATCH2LQ9NWQ4 482 aa10.68□□□□□ -0.7
LIG1-220ENST00000601091 GPC6Q9Y625 555 aaPredicted RBP10.68□□□□□ -0.7
LIG1-220ENST00000601091 GOLGA8QA0A0J9YX86 632 aa10.68□□□□□ -0.7
LIG1-220ENST00000601091 A0A1W2PPM1 405 aa10.68□□□□□ -0.7
LIG1-220ENST00000601091 GOLGA8OA6NCC3 632 aa10.68□□□□□ -0.7
LIG1-220ENST00000601091 GOLGA8NF8WBI6 632 aa10.68□□□□□ -0.7
LIG1-220ENST00000601091 HDAC3O15379 428 aa10.68□□□□□ -0.7
LIG1-220ENST00000601091 KPNA6O60684 536 aa10.68□□□□□ -0.7
LIG1-220ENST00000601091 ENTPD5O75356 428 aa10.68□□□□□ -0.7
LIG1-220ENST00000601091 METTL11BQ5VVY1 283 aa10.68□□□□□ -0.7
LIG1-220ENST00000601091 CATSPERGQ6ZRH7 1159 aa10.68□□□□□ -0.7
LIG1-220ENST00000601091 PRPF39Q86UA1 669 aaKnown RBP10.68□□□□□ -0.7
LIG1-220ENST00000601091 CYP4X1Q8N118 509 aa10.68□□□□□ -0.7
LIG1-220ENST00000601091 SLC26A7Q8TE54 656 aa10.68□□□□□ -0.7
LIG1-220ENST00000601091 SLC16A10Q8TF71 515 aa10.68□□□□□ -0.7
LIG1-220ENST00000601091 STK32AQ8WU08 396 aa10.68□□□□□ -0.7
LIG1-220ENST00000601091 ZNF516Q92618 1163 aa10.68□□□□□ -0.7
LIG1-220ENST00000601091 APOPT1Q96IL0 206 aa10.68□□□□□ -0.7
LIG1-220ENST00000601091 TNIP3Q96KP6 325 aa10.68□□□□□ -0.7
LIG1-220ENST00000601091 RNPEPL1Q9HAU8 725 aa10.68□□□□□ -0.7
LIG1-220ENST00000601091 CYP4F11Q9HBI6 524 aa10.68□□□□□ -0.7
LIG1-220ENST00000601091 ZC4H2Q9NQZ6 224 aa10.68□□□□□ -0.7
LIG1-220ENST00000601091 ZNF536O15090 1300 aa10.68□□□□□ -0.7
LIG1-220ENST00000601091 LIN7AO14910 233 aaPredicted RBP10.68□□□□□ -0.7
LIG1-220ENST00000601091 PRPF4O43172 522 aaKnown RBP eCLIP10.68□□□□□ -0.71e-6■■■■□ 23.6
LIG1-220ENST00000601091 KLHL2O95198 593 aa10.68□□□□□ -0.7
LIG1-220ENST00000601091 HMGCRP04035 888 aa10.68□□□□□ -0.7
LIG1-220ENST00000601091 ALADP13716 330 aa10.68□□□□□ -0.7
LIG1-220ENST00000601091 EIF2B2P49770 351 aaKnown RBP10.68□□□□□ -0.7
LIG1-220ENST00000601091 THOC5Q13769 683 aaKnown RBP10.68□□□□□ -0.7
LIG1-220ENST00000601091 MMEL1Q495T6 779 aa10.68□□□□□ -0.7
LIG1-220ENST00000601091 CAND1Q86VP6 1230 aaKnown RBP10.68□□□□□ -0.7
LIG1-220ENST00000601091 ECHDC2Q86YB7 292 aa10.68□□□□□ -0.7
LIG1-220ENST00000601091 ST13P4Q8IZP2 240 aaPredicted RBP10.68□□□□□ -0.7
LIG1-220ENST00000601091 PDZD8Q8NEN9 1154 aa10.68□□□□□ -0.7
LIG1-220ENST00000601091 ZNF398Q8TD17 642 aa10.68□□□□□ -0.7
LIG1-220ENST00000601091 FRS2Q8WU20 508 aa10.68□□□□□ -0.7
LIG1-220ENST00000601091 SYT11Q9BT88 431 aa10.68□□□□□ -0.7
LIG1-220ENST00000601091 STRA6Q9BX79 667 aa10.68□□□□□ -0.7
LIG1-220ENST00000601091 ELP3Q9H9T3 547 aa10.68□□□□□ -0.7
LIG1-220ENST00000601091 SLC12A4Q9UP95 1085 aa10.68□□□□□ -0.7
LIG1-220ENST00000601091 BANF1O75531 89 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 75.3 ms