RNA–Protein interactions for RNA: ENST00000409915.8

SF3B1-202, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2 BASIC

Gene SF3B1, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-202ENST00000409915 TRIM68Q6AZZ1 485 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 EFCAB12Q6NXP0 572 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 FAM117BQ6P1L5 589 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 CCDC73Q6ZRK6 1079 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 CCDC80Q76M96 950 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 KCNK18Q7Z418 384 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 RTN4RL1Q86UN2 441 aaPredicted RBP4.78□□□□□ -1.64
SF3B1-202ENST00000409915 TAX1BP1Q86VP1 789 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 CATSPER3Q86XQ3 398 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 KSR1Q8IVT5 923 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 C4orf19Q8IY42 314 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 LINC01465Q8N7H1 131 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 SMYD1Q8NB12 490 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 AVL9Q8NBF6 648 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 DBF4BQ8NFT6 615 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 SPPL3Q8TCT6 385 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 LRRC15Q8TF66 581 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 CYB5D2Q8WUJ1 264 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 EDARADDQ8WWZ3 215 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 LINC01599Q8WXQ3 324 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 LZICQ8WZA0 190 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 SLC35B4Q969S0 331 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 TMEM143Q96AN5 459 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 PPP1R14BQ96C90 147 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 WDR89Q96FK6 387 aaPredicted RBP4.78□□□□□ -1.64
SF3B1-202ENST00000409915 CCDC43Q96MW1 224 aaKnown RBP4.78□□□□□ -1.64
SF3B1-202ENST00000409915 ALS2CR12Q96Q35 445 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 SLC30A3Q99726 388 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 HSD17B14Q9BPX1 270 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 HEPHQ9BQS7 1158 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 JPH2Q9BR39 696 aaPredicted RBP4.78□□□□□ -1.64
SF3B1-202ENST00000409915 PAIP1Q9H074 479 aaKnown RBP4.78□□□□□ -1.64
SF3B1-202ENST00000409915 IGFLR1Q9H665 355 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 ZMAT4Q9H898 229 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 AGO3Q9H9G7 860 aaKnown RBP4.78□□□□□ -1.64
SF3B1-202ENST00000409915 SP110Q9HB58 689 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 XAB2Q9HCS7 855 aaKnown RBP4.78□□□□□ -1.64
SF3B1-202ENST00000409915 POLD4Q9HCU8 107 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 GPRC5CQ9NQ84 441 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 XPNPEP1Q9NQW7 623 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 NRBP2Q9NSY0 501 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 DDX19AQ9NUU7 478 aaKnown RBP4.78□□□□□ -1.64
SF3B1-202ENST00000409915 QPCTLQ9NXS2 382 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 SPATA7Q9P0W8 599 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 LRWD1Q9UFC0 647 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 CORO1CQ9ULV4 474 aaPredicted RBP4.78□□□□□ -1.64
SF3B1-202ENST00000409915 CBLCQ9ULV8 474 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 C19orf53Q9UNZ5 99 aaPredicted RBP4.78□□□□□ -1.64
SF3B1-202ENST00000409915 ZNF510Q9Y2H8 683 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 PCDHB12Q9Y5F1 795 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 PCDHA2Q9Y5H9 948 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP4.78□□□□□ -1.646e-12■□□□□ 9.9
SF3B1-202ENST00000409915 TRPV2Q9Y5S1 764 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 NPFFR2Q9Y5X5 522 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 ATP23Q9Y6H3 246 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 IKBKGQ9Y6K9 419 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 WDR81Q562E7 1941 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 ARID2Q68CP9 1835 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 MYH9P35579 1960 aaKnown RBP4.77□□□□□ -1.65
SF3B1-202ENST00000409915 A0A088AWK7 358 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 LOC100996750A0A140TA64 210 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 SLC12A8A0AV02 714 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 CCDC151A5D8V7 595 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 E9PMD0 336 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 INO80B-WBP1J3KQ70 363 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 M0QZ92 97 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 LAD1O00515 517 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 ABLIM1O14639 778 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 DVL2O14641 736 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 WNT9AO14904 365 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 POLR3GO15318 223 aaPredicted RBP4.77□□□□□ -1.65
SF3B1-202ENST00000409915 PHGDHO43175 533 aaKnown RBP4.77□□□□□ -1.65
SF3B1-202ENST00000409915 AP5Z1O43299 807 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 TBCAO75347 108 aaKnown RBP4.77□□□□□ -1.65
SF3B1-202ENST00000409915 PTP4A3O75365 173 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 GPR32O75388 356 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 RASSF9O75901 435 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 TPPPO94811 219 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 LYPLA2O95372 231 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 PENKP01210 267 aaPredicted RBP4.77□□□□□ -1.65
SF3B1-202ENST00000409915 CXCL10P02778 98 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 FTLP02792 175 aaPredicted RBP4.77□□□□□ -1.65
SF3B1-202ENST00000409915 CLEC2LP0C7M8 214 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 LCP1P13796 627 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 IDO1P14902 403 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 MYOGP15173 224 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 CHMP24386 653 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 CD40P25942 277 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 COL8A1P27658 744 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 STIP1P31948 543 aaKnown RBP4.77□□□□□ -1.65
SF3B1-202ENST00000409915 RFC2P35250 354 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 GCKP35557 465 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 HNF4AP41235 474 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 AFMP43652 599 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 RARRES1P49788 294 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 SEPHS1P49903 392 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 NLRP11P59045 1033 aaKnown RBP4.77□□□□□ -1.65
SF3B1-202ENST00000409915 WDR5P61964 334 aaKnown RBP4.77□□□□□ -1.65
SF3B1-202ENST00000409915 LAMB3Q13751 1172 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 KARSQ15046 597 aaKnown RBP4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 81.2 ms