RNA–Protein interactions for RNA: ENST00000393452.7

TDP1-202, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best) BASIC

Gene TDP1, Length 2,370 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-202ENST00000393452 PDZD4Q76G19 769 aaPredicted RBP9.31□□□□□ -0.92
TDP1-202ENST00000393452 BEND5Q7L4P6 421 aa9.31□□□□□ -0.92
TDP1-202ENST00000393452 OTOAQ7RTW8 1153 aa9.31□□□□□ -0.92
TDP1-202ENST00000393452 CTU1Q7Z7A3 348 aaKnown RBP9.31□□□□□ -0.92
TDP1-202ENST00000393452 METTL23Q86XA0 190 aa9.31□□□□□ -0.92
TDP1-202ENST00000393452 TP53INP2Q8IXH6 220 aa9.31□□□□□ -0.92
TDP1-202ENST00000393452 ZNF567Q8N184 647 aa9.31□□□□□ -0.92
TDP1-202ENST00000393452 PDCD7Q8N8D1 485 aaKnown RBP9.31□□□□□ -0.92
TDP1-202ENST00000393452 ADAM32Q8TC27 787 aa9.31□□□□□ -0.92
TDP1-202ENST00000393452 ARNTL2Q8WYA1 636 aa9.31□□□□□ -0.92
TDP1-202ENST00000393452 PGBD4Q96DM1 585 aa9.31□□□□□ -0.92
TDP1-202ENST00000393452 MTBPQ96DY7 904 aa9.31□□□□□ -0.92
TDP1-202ENST00000393452 STAMBPL1Q96FJ0 436 aa9.31□□□□□ -0.92
TDP1-202ENST00000393452 UROC1Q96N76 676 aa9.31□□□□□ -0.92
TDP1-202ENST00000393452 TRIM56Q9BRZ2 755 aaKnown RBP9.31□□□□□ -0.92
TDP1-202ENST00000393452 RHOBTB2Q9BYZ6 727 aa9.31□□□□□ -0.92
TDP1-202ENST00000393452 C12orf65Q9H3J6 166 aaKnown RBP9.31□□□□□ -0.92
TDP1-202ENST00000393452 TMLHEQ9NVH6 421 aa9.31□□□□□ -0.92
TDP1-202ENST00000393452 DDIT4Q9NX09 232 aa9.31□□□□□ -0.92
TDP1-202ENST00000393452 GGT7Q9UJ14 662 aa9.31□□□□□ -0.92
TDP1-202ENST00000393452 MAD1L1Q9Y6D9 718 aa9.31□□□□□ -0.92
TDP1-202ENST00000393452 THSD7BQ9C0I4 1608 aa9.31□□□□□ -0.92
TDP1-202ENST00000393452 HMX2A2RU54 273 aa9.31□□□□□ -0.92
TDP1-202ENST00000393452 TMEM88BA6NKF7 163 aa9.31□□□□□ -0.92
TDP1-202ENST00000393452 SDR42E2A6NKP2 422 aa9.31□□□□□ -0.92
TDP1-202ENST00000393452 RFPL1O75677 317 aa9.31□□□□□ -0.92
TDP1-202ENST00000393452 ALDH1A1P00352 501 aa9.31□□□□□ -0.92
TDP1-202ENST00000393452 CSH1P0DML2 217 aa9.31□□□□□ -0.92
TDP1-202ENST00000393452 CSH2P0DML3 217 aa9.31□□□□□ -0.92
TDP1-202ENST00000393452 SKIP12755 728 aa9.31□□□□□ -0.92
TDP1-202ENST00000393452 TTC3P53804 2025 aa9.31□□□□□ -0.92
TDP1-202ENST00000393452 TPI1P60174 286 aa9.31□□□□□ -0.92
TDP1-202ENST00000393452 NCALDP61601 193 aa9.31□□□□□ -0.92
TDP1-202ENST00000393452 PPIDQ08752 370 aaKnown RBP9.31□□□□□ -0.92
TDP1-202ENST00000393452 EIF4EBP2Q13542 120 aaPredicted RBP9.31□□□□□ -0.92
TDP1-202ENST00000393452 SEPT7Q16181 437 aaKnown RBP9.31□□□□□ -0.92
TDP1-202ENST00000393452 ARL13BQ3SXY8 428 aa9.31□□□□□ -0.92
TDP1-202ENST00000393452 PAXIP1Q6ZW49 1069 aaPredicted RBP9.31□□□□□ -0.92
TDP1-202ENST00000393452 LRRTM3Q86VH5 581 aa9.31□□□□□ -0.92
TDP1-202ENST00000393452 CCNJLQ8IV13 435 aa9.31□□□□□ -0.92
TDP1-202ENST00000393452 PCSK9Q8NBP7 692 aaKnown RBP9.31□□□□□ -0.92
TDP1-202ENST00000393452 SHROOM3Q8TF72 1996 aa9.31□□□□□ -0.92
TDP1-202ENST00000393452 C10orf82Q8WW14 230 aa9.31□□□□□ -0.92
TDP1-202ENST00000393452 RSPH1Q8WYR4 309 aa9.31□□□□□ -0.92
TDP1-202ENST00000393452 TTC17Q96AE7 1141 aa9.31□□□□□ -0.92
TDP1-202ENST00000393452 HHIPL1Q96JK4 782 aa9.31□□□□□ -0.92
TDP1-202ENST00000393452 SUSD3Q96L08 255 aa9.31□□□□□ -0.92
TDP1-202ENST00000393452 BRD8Q9H0E9 1235 aa9.31□□□□□ -0.92
TDP1-202ENST00000393452 DMAP1Q9NPF5 467 aaPredicted RBP9.31□□□□□ -0.92
TDP1-202ENST00000393452 USH1CQ9Y6N9 552 aa9.31□□□□□ -0.92
TDP1-202ENST00000393452 FRMPD3Q5JV73 1810 aa9.31□□□□□ -0.92
TDP1-202ENST00000393452 CFAP73A6NFT4 308 aa9.3□□□□□ -0.92
TDP1-202ENST00000393452 UGT1A9O60656 530 aa9.3□□□□□ -0.92
TDP1-202ENST00000393452 KRT38O76015 456 aa9.3□□□□□ -0.92
TDP1-202ENST00000393452 IGLV3-25P01717 112 aa9.3□□□□□ -0.92
TDP1-202ENST00000393452 PRKAR2AP13861 404 aaKnown RBP9.3□□□□□ -0.92
TDP1-202ENST00000393452 TYMPP19971 482 aa9.3□□□□□ -0.92
TDP1-202ENST00000393452 BDNFP23560 247 aa9.3□□□□□ -0.92
TDP1-202ENST00000393452 PSMB4P28070 264 aa9.3□□□□□ -0.92
TDP1-202ENST00000393452 SERPINB9P50453 376 aa9.3□□□□□ -0.92
TDP1-202ENST00000393452 MAPRE1Q15691 268 aaKnown RBP9.3□□□□□ -0.92
TDP1-202ENST00000393452 PAN2Q504Q3 1202 aaKnown RBP9.3□□□□□ -0.92
TDP1-202ENST00000393452 BSPRYQ5W0U4 402 aa9.3□□□□□ -0.92
TDP1-202ENST00000393452 TIFABQ6ZNK6 161 aa9.3□□□□□ -0.92
TDP1-202ENST00000393452 NPWQ8N729 165 aa9.3□□□□□ -0.92
TDP1-202ENST00000393452 NETO2Q8NC67 525 aa9.3□□□□□ -0.92
TDP1-202ENST00000393452 CCNYQ8ND76 341 aa9.3□□□□□ -0.92
TDP1-202ENST00000393452 SMC1BQ8NDV3 1235 aa9.3□□□□□ -0.92
TDP1-202ENST00000393452 OR10T2Q8NGX3 314 aa9.3□□□□□ -0.92
TDP1-202ENST00000393452 ZNF398Q8TD17 642 aa9.3□□□□□ -0.92
TDP1-202ENST00000393452 EDEM1Q92611 657 aa9.3□□□□□ -0.92
TDP1-202ENST00000393452 DPF3Q92784 378 aa9.3□□□□□ -0.92
TDP1-202ENST00000393452 PTPRN2Q92932 1015 aa9.3□□□□□ -0.92
TDP1-202ENST00000393452 HDAC11Q96DB2 347 aa9.3□□□□□ -0.92
TDP1-202ENST00000393452 SRPK1Q96SB4 655 aaKnown RBP9.3□□□□□ -0.92
TDP1-202ENST00000393452 NAT9Q9BTE0 207 aa9.3□□□□□ -0.92
TDP1-202ENST00000393452 WDCPQ9H6R7 721 aa9.3□□□□□ -0.92
TDP1-202ENST00000393452 MANSC1Q9H8J5 431 aa9.3□□□□□ -0.92
TDP1-202ENST00000393452 UGT1A7Q9HAW7 530 aa9.3□□□□□ -0.92
TDP1-202ENST00000393452 UGT1A10Q9HAW8 530 aa9.3□□□□□ -0.92
TDP1-202ENST00000393452 UGT1A8Q9HAW9 530 aa9.3□□□□□ -0.92
TDP1-202ENST00000393452 TRMT13Q9NUP7 481 aaKnown RBP9.3□□□□□ -0.92
TDP1-202ENST00000393452 WDR27A2RRH5 827 aa9.3□□□□□ -0.92
TDP1-202ENST00000393452 MTSS1O43312 755 aa9.3□□□□□ -0.92
TDP1-202ENST00000393452 IL1BP01584 269 aa9.3□□□□□ -0.92
TDP1-202ENST00000393452 ITGB1P05556 798 aa9.3□□□□□ -0.92
TDP1-202ENST00000393452 CCNB1P14635 433 aa9.3□□□□□ -0.92
TDP1-202ENST00000393452 PTPN3P26045 913 aa9.3□□□□□ -0.92
TDP1-202ENST00000393452 SKIV2L2P42285 1042 aaKnown RBP9.3□□□□□ -0.92
TDP1-202ENST00000393452 NIPAL4Q0D2K0 466 aa9.3□□□□□ -0.92
TDP1-202ENST00000393452 GALNT2Q10471 571 aa9.3□□□□□ -0.92
TDP1-202ENST00000393452 ITGA7Q13683 1181 aa9.3□□□□□ -0.92
TDP1-202ENST00000393452 OVOS1Q6IE37 1185 aa9.3□□□□□ -0.92
TDP1-202ENST00000393452 CYB5D1Q6P9G0 228 aa9.3□□□□□ -0.92
TDP1-202ENST00000393452 DCLRE1AQ6PJP8 1040 aa9.3□□□□□ -0.92
TDP1-202ENST00000393452 MARK2Q7KZI7 788 aaKnown RBP9.3□□□□□ -0.92
TDP1-202ENST00000393452 FAM111AQ96PZ2 611 aa9.3□□□□□ -0.92
TDP1-202ENST00000393452 GORASP1Q9BQQ3 440 aa9.3□□□□□ -0.92
TDP1-202ENST00000393452 TRIM62Q9BVG3 475 aa9.3□□□□□ -0.92
TDP1-202ENST00000393452 KLC4Q9NSK0 619 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms