RNA–Protein interactions for RNA: ENST00000330334.7

HDDC3-201, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,047 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-201ENST00000330334 TOE1Q96GM8 510 aaKnown RBP18.41■□□□□ 0.54
HDDC3-201ENST00000330334 PCED1AQ9H1Q7 454 aa18.41■□□□□ 0.54
HDDC3-201ENST00000330334 NDST4Q9H3R1 872 aa18.41■□□□□ 0.54
HDDC3-201ENST00000330334 SIX2Q9NPC8 291 aa18.41■□□□□ 0.54
HDDC3-201ENST00000330334 CD93Q9NPY3 652 aa18.41■□□□□ 0.54
HDDC3-201ENST00000330334 PI4KAP42356 2102 aa18.41■□□□□ 0.54
HDDC3-201ENST00000330334 CHD8Q9HCK8 2581 aa18.4■□□□□ 0.54
HDDC3-201ENST00000330334 KCNJ18B7U540 433 aa18.4■□□□□ 0.54
HDDC3-201ENST00000330334 TRUB2O95900 331 aaKnown RBP18.4■□□□□ 0.54
HDDC3-201ENST00000330334 APOEP02649 317 aa18.4■□□□□ 0.54
HDDC3-201ENST00000330334 CFIP05156 583 aa18.4■□□□□ 0.54
HDDC3-201ENST00000330334 SLC2A3P11169 496 aa18.4■□□□□ 0.54
HDDC3-201ENST00000330334 ACADMP11310 421 aa18.4■□□□□ 0.54
HDDC3-201ENST00000330334 GNSP15586 552 aa18.4■□□□□ 0.54
HDDC3-201ENST00000330334 POLR2EP19388 210 aaKnown RBP18.4■□□□□ 0.54
HDDC3-201ENST00000330334 CD70P32970 193 aa18.4■□□□□ 0.54
HDDC3-201ENST00000330334 USP8P40818 1118 aa18.4■□□□□ 0.54
HDDC3-201ENST00000330334 APBA1Q02410 837 aa18.4■□□□□ 0.54
HDDC3-201ENST00000330334 MTA1Q13330 715 aa18.4■□□□□ 0.54
HDDC3-201ENST00000330334 DPCR1Q3MIW9 517 aa18.4■□□□□ 0.54
HDDC3-201ENST00000330334 VWA3BQ502W6 1294 aa18.4■□□□□ 0.54
HDDC3-201ENST00000330334 FNDC3BQ53EP0 1204 aaKnown RBP18.4■□□□□ 0.54
HDDC3-201ENST00000330334 EFHC1Q5JVL4 640 aa18.4■□□□□ 0.54
HDDC3-201ENST00000330334 DPY19L2P1Q6NXN4 242 aa18.4■□□□□ 0.54
HDDC3-201ENST00000330334 MFN1Q8IWA4 741 aa18.4■□□□□ 0.54
HDDC3-201ENST00000330334 WFDC5Q8TCV5 224 aa18.4■□□□□ 0.54
HDDC3-201ENST00000330334 CYB5D2Q8WUJ1 264 aa18.4■□□□□ 0.54
HDDC3-201ENST00000330334 PPP1R13BQ96KQ4 1090 aa18.4■□□□□ 0.54
HDDC3-201ENST00000330334 BTN2A3PQ96KV6 586 aa18.4■□□□□ 0.54
HDDC3-201ENST00000330334 PRICKLE1Q96MT3 831 aaPredicted RBP18.4■□□□□ 0.54
HDDC3-201ENST00000330334 NOX5Q96PH1 765 aa18.4■□□□□ 0.54
HDDC3-201ENST00000330334 TUBGCP2Q9BSJ2 902 aa18.4■□□□□ 0.54
HDDC3-201ENST00000330334 NUP62CLQ9H1M0 184 aa18.4■□□□□ 0.54
HDDC3-201ENST00000330334 SLTMQ9NWH9 1034 aaKnown RBP eCLIP18.4■□□□□ 0.54
HDDC3-201ENST00000330334 SUN2Q9UH99 717 aa18.4■□□□□ 0.54
HDDC3-201ENST00000330334 DNAJC12Q9UKB3 198 aa18.4■□□□□ 0.54
HDDC3-201ENST00000330334 FOXN3O00409 490 aaPredicted RBP18.39■□□□□ 0.53
HDDC3-201ENST00000330334 ARHGAP33O14559 1287 aa18.39■□□□□ 0.53
HDDC3-201ENST00000330334 ASLP04424 464 aa18.39■□□□□ 0.53
HDDC3-201ENST00000330334 SYPP08247 313 aa18.39■□□□□ 0.53
HDDC3-201ENST00000330334 NOVA1P51513 510 aaKnown RBP18.39■□□□□ 0.53
HDDC3-201ENST00000330334 BPIFB4P59827 614 aa18.39■□□□□ 0.53
HDDC3-201ENST00000330334 RPS24P62847 133 aaKnown RBP18.39■□□□□ 0.53
HDDC3-201ENST00000330334 ARID5BQ14865 1188 aa18.39■□□□□ 0.53
HDDC3-201ENST00000330334 MIIPQ5JXC2 388 aa18.39■□□□□ 0.53
HDDC3-201ENST00000330334 SH3PXD2AQ5TCZ1 1133 aa18.39■□□□□ 0.53
HDDC3-201ENST00000330334 PSAPL1Q6NUJ1 521 aa18.39■□□□□ 0.53
HDDC3-201ENST00000330334 CCDC117Q8IWD4 279 aaPredicted RBP18.39■□□□□ 0.53
HDDC3-201ENST00000330334 FAM71AQ8IYT1 594 aa18.39■□□□□ 0.53
HDDC3-201ENST00000330334 ADAM32Q8TC27 787 aa18.39■□□□□ 0.53
HDDC3-201ENST00000330334 CNTNAP3BQ96NU0 1288 aa18.39■□□□□ 0.53
HDDC3-201ENST00000330334 SLC2A13Q96QE2 648 aa18.39■□□□□ 0.53
HDDC3-201ENST00000330334 CPXM1Q96SM3 734 aa18.39■□□□□ 0.53
HDDC3-201ENST00000330334 CNTNAP3Q9BZ76 1288 aa18.39■□□□□ 0.53
HDDC3-201ENST00000330334 NUCKS1Q9H1E3 243 aaKnown RBP18.39■□□□□ 0.53
HDDC3-201ENST00000330334 SLC12A6Q9UHW9 1150 aa18.39■□□□□ 0.53
HDDC3-201ENST00000330334 ATXN2Q99700 1313 aaKnown RBP18.39■□□□□ 0.53
HDDC3-201ENST00000330334 CKAP5Q14008 2032 aa18.39■□□□□ 0.53
HDDC3-201ENST00000330334 METTL12A8MUP2 240 aa18.38■□□□□ 0.53
HDDC3-201ENST00000330334 KCNU1A8MYU2 1149 aa18.38■□□□□ 0.53
HDDC3-201ENST00000330334 HSF2BPO75031 334 aa18.38■□□□□ 0.53
HDDC3-201ENST00000330334 HLA-EP13747 358 aa18.38■□□□□ 0.53
HDDC3-201ENST00000330334 CLCN1P35523 988 aa18.38■□□□□ 0.53
HDDC3-201ENST00000330334 KRT9P35527 623 aa18.38■□□□□ 0.53
HDDC3-201ENST00000330334 ATXN3P54252 364 aaPredicted RBP18.38■□□□□ 0.53
HDDC3-201ENST00000330334 CDK17Q00537 523 aa18.38■□□□□ 0.53
HDDC3-201ENST00000330334 SEMA3BQ13214 749 aa18.38■□□□□ 0.53
HDDC3-201ENST00000330334 DCAF6Q58WW2 860 aa18.38■□□□□ 0.53
HDDC3-201ENST00000330334 ZC3H12AQ5D1E8 599 aaKnown RBP18.38■□□□□ 0.53
HDDC3-201ENST00000330334 C11orf57Q6ZUT1 292 aaPredicted RBP18.38■□□□□ 0.53
HDDC3-201ENST00000330334 RGL4Q8IZJ4 473 aa18.38■□□□□ 0.53
HDDC3-201ENST00000330334 MYEOVQ96EZ4 313 aa18.38■□□□□ 0.53
HDDC3-201ENST00000330334 GPR174Q9BXC1 333 aa18.38■□□□□ 0.53
HDDC3-201ENST00000330334 ZDHHC5Q9C0B5 715 aa18.38■□□□□ 0.53
HDDC3-201ENST00000330334 PRSS16Q9NQE7 514 aa18.38■□□□□ 0.53
HDDC3-201ENST00000330334 STIM2Q9P246 746 aa18.38■□□□□ 0.53
HDDC3-201ENST00000330334 ANGPTL2Q9UKU9 493 aa18.38■□□□□ 0.53
HDDC3-201ENST00000330334 LUC7L3O95232 432 aaKnown RBP18.37■□□□□ 0.53
HDDC3-201ENST00000330334 KCNA4P22459 653 aa18.37■□□□□ 0.53
HDDC3-201ENST00000330334 MAPK8P45983 427 aa18.37■□□□□ 0.53
HDDC3-201ENST00000330334 CDH18Q13634 790 aa18.37■□□□□ 0.53
HDDC3-201ENST00000330334 TAF5Q15542 800 aa18.37■□□□□ 0.53
HDDC3-201ENST00000330334 UAP1L1Q3KQV9 507 aa18.37■□□□□ 0.53
HDDC3-201ENST00000330334 PIP4P1Q86T03 277 aa18.37■□□□□ 0.53
HDDC3-201ENST00000330334 SLC47A2Q86VL8 602 aa18.37■□□□□ 0.53
HDDC3-201ENST00000330334 ZDHHC17Q8IUH5 632 aa18.37■□□□□ 0.53
HDDC3-201ENST00000330334 ATP6V0D2Q8N8Y2 350 aa18.37■□□□□ 0.53
HDDC3-201ENST00000330334 MYO19Q96H55 970 aa18.37■□□□□ 0.53
HDDC3-201ENST00000330334 DNAAF2Q9NVR5 837 aaKnown RBP18.37■□□□□ 0.53
HDDC3-201ENST00000330334 TMEM51Q9NW97 253 aa18.37■□□□□ 0.53
HDDC3-201ENST00000330334 KIAA1522Q9P206 1035 aaPredicted RBP18.37■□□□□ 0.53
HDDC3-201ENST00000330334 TJP2Q9UDY2 1190 aa18.37■□□□□ 0.53
HDDC3-201ENST00000330334 XPO7Q9UIA9 1087 aaKnown RBP18.37■□□□□ 0.53
HDDC3-201ENST00000330334 INTS6Q9UL03 887 aaKnown RBP18.37■□□□□ 0.53
HDDC3-201ENST00000330334 CEP295Q9C0D2 2601 aa18.37■□□□□ 0.53
HDDC3-201ENST00000330334 ASCC3Q8N3C0 2202 aaKnown RBP18.37■□□□□ 0.53
HDDC3-201ENST00000330334 CACNA1EQ15878 2313 aa18.37■□□□□ 0.53
HDDC3-201ENST00000330334 A0A1B0GTW7 788 aa18.36■□□□□ 0.53
HDDC3-201ENST00000330334 MOCS2O96007 188 aaPredicted RBP18.36■□□□□ 0.53
HDDC3-201ENST00000330334 SRPRAP08240 638 aaKnown RBP18.36■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms