RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 MRNIPQ6NTE8 343 aa19.75■□□□□ 0.75
USP48-201ENST00000308271 CYLDQ9NQC7 956 aa19.75■□□□□ 0.75
USP48-201ENST00000308271 DMAC2Q9NW81 257 aa19.75■□□□□ 0.75
USP48-201ENST00000308271 GPRC5DQ9NZD1 345 aa19.75■□□□□ 0.75
USP48-201ENST00000308271 NOCTQ9UK39 431 aaKnown RBP19.75■□□□□ 0.75
USP48-201ENST00000308271 TRIM38O00635 465 aa19.75■□□□□ 0.75
USP48-201ENST00000308271 PEX1O43933 1283 aa19.75■□□□□ 0.75
USP48-201ENST00000308271 UPP2O95045 317 aa19.75■□□□□ 0.75
USP48-201ENST00000308271 FKBP9O95302 570 aa19.75■□□□□ 0.75
USP48-201ENST00000308271 TRUB2O95900 331 aaKnown RBP19.75■□□□□ 0.75
USP48-201ENST00000308271 MMP8P22894 467 aa19.75■□□□□ 0.75
USP48-201ENST00000308271 SCARA3Q6AZY7 606 aa19.75■□□□□ 0.75
USP48-201ENST00000308271 FKBP9P1Q75LS8 142 aa19.75■□□□□ 0.75
USP48-201ENST00000308271 BTBD9Q96Q07 612 aa19.75■□□□□ 0.75
USP48-201ENST00000308271 FETUBQ9UGM5 382 aa19.75■□□□□ 0.75
USP48-201ENST00000308271 CFAP99D6REC4 459 aa19.75■□□□□ 0.75
USP48-201ENST00000308271 INPP4BO15327 924 aa19.75■□□□□ 0.75
USP48-201ENST00000308271 DNAJB2P25686 324 aa19.75■□□□□ 0.75
USP48-201ENST00000308271 NDST1P52848 882 aa19.75■□□□□ 0.75
USP48-201ENST00000308271 ANO7Q6IWH7 933 aa19.75■□□□□ 0.75
USP48-201ENST00000308271 CES3Q6UWW8 571 aa19.75■□□□□ 0.75
USP48-201ENST00000308271 CLPTM1LQ96KA5 538 aa19.75■□□□□ 0.75
USP48-201ENST00000308271 C1orf50Q9BV19 199 aa19.75■□□□□ 0.75
USP48-201ENST00000308271 ZCWPW1Q9H0M4 648 aa19.75■□□□□ 0.75
USP48-201ENST00000308271 PIH1D1Q9NWS0 290 aaKnown RBP19.75■□□□□ 0.75
USP48-201ENST00000308271 POLIQ9UNA4 740 aa19.75■□□□□ 0.75
USP48-201ENST00000308271 SPDYE5A6NIY4 337 aa19.74■□□□□ 0.75
USP48-201ENST00000308271 RHOBTB1O94844 696 aa19.74■□□□□ 0.75
USP48-201ENST00000308271 WDR47O94967 919 aa19.74■□□□□ 0.75
USP48-201ENST00000308271 CYP2C9P11712 490 aa19.74■□□□□ 0.75
USP48-201ENST00000308271 BST2Q10589 180 aaKnown RBP19.74■□□□□ 0.75
USP48-201ENST00000308271 TRIM60Q495X7 471 aa19.74■□□□□ 0.75
USP48-201ENST00000308271 PPP1R15BQ5SWA1 713 aa19.74■□□□□ 0.75
USP48-201ENST00000308271 PRDM16Q9HAZ2 1276 aa19.74■□□□□ 0.75
USP48-201ENST00000308271 NDUFAF1Q9Y375 327 aa19.74■□□□□ 0.75
USP48-201ENST00000308271 LRRC42Q9Y546 428 aa19.74■□□□□ 0.75
USP48-201ENST00000308271 A0A0A0MRY4 1105 aa19.74■□□□□ 0.75
USP48-201ENST00000308271 NAGLUP54802 743 aa19.74■□□□□ 0.75
USP48-201ENST00000308271 CDH8P55286 799 aa19.74■□□□□ 0.75
USP48-201ENST00000308271 POU4F1Q01851 419 aa19.74■□□□□ 0.75
USP48-201ENST00000308271 DCAF4L1Q3SXM0 396 aa19.74■□□□□ 0.75
USP48-201ENST00000308271 DALRD3Q5D0E6 543 aaKnown RBP19.74■□□□□ 0.75
USP48-201ENST00000308271 PCDH20Q8N6Y1 951 aaKnown RBP19.74■□□□□ 0.75
USP48-201ENST00000308271 CPT1BQ92523 772 aa19.74■□□□□ 0.75
USP48-201ENST00000308271 SPATA13Q96N96 652 aa19.74■□□□□ 0.75
USP48-201ENST00000308271 KCTD14Q9BQ13 255 aaPredicted RBP19.74■□□□□ 0.75
USP48-201ENST00000308271 RTKNQ9BST9 563 aa19.74■□□□□ 0.75
USP48-201ENST00000308271 RNPEPQ9H4A4 650 aa19.74■□□□□ 0.75
USP48-201ENST00000308271 PACSIN3Q9UKS6 424 aa19.74■□□□□ 0.75
USP48-201ENST00000308271 PCDHGB4Q9UN71 923 aa19.74■□□□□ 0.75
USP48-201ENST00000308271 BCL9LQ86UU0 1499 aa19.74■□□□□ 0.75
USP48-201ENST00000308271 HK2P52789 917 aa19.74■□□□□ 0.75
USP48-201ENST00000308271 DRICH1Q6PGQ1 229 aaPredicted RBP19.74■□□□□ 0.75
USP48-201ENST00000308271 CASS4Q9NQ75 786 aa19.74■□□□□ 0.75
USP48-201ENST00000308271 CRHR1P34998 444 aa19.73■□□□□ 0.75
USP48-201ENST00000308271 CLK2P49760 499 aaKnown RBP19.73■□□□□ 0.75
USP48-201ENST00000308271 SLC6A3Q01959 620 aa19.73■□□□□ 0.75
USP48-201ENST00000308271 MSLNQ13421 630 aaPredicted RBP19.73■□□□□ 0.75
USP48-201ENST00000308271 FRG1Q14331 258 aaKnown RBP19.73■□□□□ 0.75
USP48-201ENST00000308271 VPS72Q15906 364 aa19.73■□□□□ 0.75
USP48-201ENST00000308271 RFWD3Q6PCD5 774 aa19.73■□□□□ 0.75
USP48-201ENST00000308271 NSMCE2Q96MF7 247 aa19.73■□□□□ 0.75
USP48-201ENST00000308271 IQCA1LA6NCM1 817 aa19.73■□□□□ 0.75
USP48-201ENST00000308271 PSMD12O00232 456 aaPredicted RBP19.73■□□□□ 0.75
USP48-201ENST00000308271 MT-CO1P00395 513 aa19.73■□□□□ 0.75
USP48-201ENST00000308271 ERVK-10P10266 1014 aa19.73■□□□□ 0.75
USP48-201ENST00000308271 PSME3P61289 254 aa19.73■□□□□ 0.75
USP48-201ENST00000308271 HORMAD1Q86X24 394 aa19.73■□□□□ 0.75
USP48-201ENST00000308271 CEP41Q9BYV8 373 aa19.73■□□□□ 0.75
USP48-201ENST00000308271 TSR3Q9UJK0 312 aaKnown RBP19.73■□□□□ 0.75
USP48-201ENST00000308271 AJAP1Q9UKB5 411 aaPredicted RBP19.73■□□□□ 0.75
USP48-201ENST00000308271 TRHDEQ9UKU6 1024 aa19.73■□□□□ 0.75
USP48-201ENST00000308271 CAPN8A6NHC0 703 aa19.73■□□□□ 0.75
USP48-201ENST00000308271 EVPLLA8MZ36 301 aa19.73■□□□□ 0.75
USP48-201ENST00000308271 LYPLA2O95372 231 aa19.73■□□□□ 0.75
USP48-201ENST00000308271 CCDC130P13994 396 aa19.73■□□□□ 0.75
USP48-201ENST00000308271 PCSK1P29120 753 aa19.73■□□□□ 0.75
USP48-201ENST00000308271 CHRNA5P30532 468 aa19.73■□□□□ 0.75
USP48-201ENST00000308271 LAMTOR4Q0VGL1 99 aa19.73■□□□□ 0.75
USP48-201ENST00000308271 TRAF2Q12933 501 aa19.73■□□□□ 0.75
USP48-201ENST00000308271 LAMC2Q13753 1193 aa19.73■□□□□ 0.75
USP48-201ENST00000308271 LLGL2Q6P1M3 1020 aa19.73■□□□□ 0.75
USP48-201ENST00000308271 UCMAQ8WVF2 138 aa19.73■□□□□ 0.75
USP48-201ENST00000308271 CERS2Q96G23 380 aa19.73■□□□□ 0.75
USP48-201ENST00000308271 DNAJB4Q9UDY4 337 aa19.73■□□□□ 0.75
USP48-201ENST00000308271 SLC13A4Q9UKG4 626 aa19.73■□□□□ 0.75
USP48-201ENST00000308271 RAP2CQ9Y3L5 183 aa19.73■□□□□ 0.75
USP48-201ENST00000308271 C2orf71A6NGG8 1288 aa19.73■□□□□ 0.75
USP48-201ENST00000308271 IFNA8P32881 189 aa19.73■□□□□ 0.75
USP48-201ENST00000308271 LRRC8DQ7L1W4 858 aa19.73■□□□□ 0.75
USP48-201ENST00000308271 EFCAB3Q8N7B9 438 aa19.73■□□□□ 0.75
USP48-201ENST00000308271 SYBUQ9NX95 663 aa19.73■□□□□ 0.75
USP48-201ENST00000308271 WASF2Q9Y6W5 498 aa19.73■□□□□ 0.75
USP48-201ENST00000308271 E5RJQ4 531 aa19.72■□□□□ 0.75
USP48-201ENST00000308271 MAP3K13O43283 966 aa19.72■□□□□ 0.75
USP48-201ENST00000308271 ITGA2BP08514 1039 aa19.72■□□□□ 0.75
USP48-201ENST00000308271 SNX17Q15036 470 aa19.72■□□□□ 0.75
USP48-201ENST00000308271 MON1BQ7L1V2 547 aa19.72■□□□□ 0.75
USP48-201ENST00000308271 ZFPM1Q8IX07 1006 aa19.72■□□□□ 0.75
USP48-201ENST00000308271 DCUN1D1Q96GG9 259 aa19.72■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms