RNA–Protein interactions for RNA: ENST00000299633.6

HDGFL3-201, Transcript of HDGF like 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HDGFL3, Length 12,733 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDGFL3-201ENST00000299633 ARID3BQ8IVW6 561 aaPredicted RBP11.42□□□□□ -0.58
HDGFL3-201ENST00000299633 BRSK2Q8IWQ3 736 aa11.42□□□□□ -0.58
HDGFL3-201ENST00000299633 CLYBLQ8N0X4 340 aa11.42□□□□□ -0.58
HDGFL3-201ENST00000299633 MTG1Q9BT17 334 aaPredicted RBP11.42□□□□□ -0.58
HDGFL3-201ENST00000299633 RAPGEFL1Q9UHV5 662 aa11.42□□□□□ -0.58
HDGFL3-201ENST00000299633 PHTF1Q9UMS5 762 aa11.42□□□□□ -0.58
HDGFL3-201ENST00000299633 PPIEQ9UNP9 301 aaKnown RBP11.42□□□□□ -0.58
HDGFL3-201ENST00000299633 DMTF1Q9Y222 760 aa11.42□□□□□ -0.58
HDGFL3-201ENST00000299633 PCYT1BQ9Y5K3 369 aaPredicted RBP11.42□□□□□ -0.58
HDGFL3-201ENST00000299633 COMMD3-BMI1R4GMX3 469 aa11.42□□□□□ -0.58
HDGFL3-201ENST00000299633 TFECO14948 347 aaPredicted RBP11.42□□□□□ -0.58
HDGFL3-201ENST00000299633 HIST2H2ACQ16777 129 aaPredicted RBP11.42□□□□□ -0.58
HDGFL3-201ENST00000299633 HIST2H2AA3Q6FI13 130 aa11.42□□□□□ -0.58
HDGFL3-201ENST00000299633 DEFB107AQ8IZN7 70 aa11.42□□□□□ -0.58
HDGFL3-201ENST00000299633 MXD3Q9BW11 206 aa11.42□□□□□ -0.58
HDGFL3-201ENST00000299633 FGFR3P22607 806 aa11.42□□□□□ -0.58
HDGFL3-201ENST00000299633 TP53INP1Q96A56 240 aa11.42□□□□□ -0.58
HDGFL3-201ENST00000299633 CYTH4Q9UIA0 394 aa11.42□□□□□ -0.58
HDGFL3-201ENST00000299633 SETBP1Q9Y6X0 1596 aa11.42□□□□□ -0.58
HDGFL3-201ENST00000299633 FRMD7Q6ZUT3 714 aa11.42□□□□□ -0.58
HDGFL3-201ENST00000299633 R3HCC1LQ7Z5L2 792 aaKnown RBP11.42□□□□□ -0.58
HDGFL3-201ENST00000299633 OR4C6Q8NH72 309 aa11.42□□□□□ -0.58
HDGFL3-201ENST00000299633 BBS4Q96RK4 519 aa11.42□□□□□ -0.58
HDGFL3-201ENST00000299633 UTYO14607 1347 aa11.41□□□□□ -0.58
HDGFL3-201ENST00000299633 CDH4P55283 916 aa11.41□□□□□ -0.58
HDGFL3-201ENST00000299633 FMR1Q06787 632 aaKnown RBP eCLIP11.41□□□□□ -0.58
HDGFL3-201ENST00000299633 BLOC1S5Q8TDH9 187 aa11.41□□□□□ -0.58
HDGFL3-201ENST00000299633 MED14O60244 1454 aa11.41□□□□□ -0.58
HDGFL3-201ENST00000299633 KANTRA0A1W2PQU2 76 aa11.41□□□□□ -0.58
HDGFL3-201ENST00000299633 FAM172BPA6NC97 362 aa11.41□□□□□ -0.58
HDGFL3-201ENST00000299633 BMP10O95393 424 aa11.41□□□□□ -0.58
HDGFL3-201ENST00000299633 OVGP1Q12889 678 aa11.41□□□□□ -0.58
HDGFL3-201ENST00000299633 ZNF667Q5HYK9 610 aa11.41□□□□□ -0.58
HDGFL3-201ENST00000299633 INO80EQ8NBZ0 244 aaPredicted RBP11.41□□□□□ -0.58
HDGFL3-201ENST00000299633 WDR11Q9BZH6 1224 aa11.41□□□□□ -0.58
HDGFL3-201ENST00000299633 H3BM21 787 aa11.41□□□□□ -0.58
HDGFL3-201ENST00000299633 PTRHD1Q6GMV3 140 aaKnown RBP11.41□□□□□ -0.58
HDGFL3-201ENST00000299633 COMTD1Q86VU5 262 aa11.41□□□□□ -0.58
HDGFL3-201ENST00000299633 HS6ST3Q8IZP7 471 aa11.41□□□□□ -0.58
HDGFL3-201ENST00000299633 ZNF446Q9NWS9 450 aa11.41□□□□□ -0.58
HDGFL3-201ENST00000299633 LOC102724428A0A0B4J2F2 783 aa11.41□□□□□ -0.58
HDGFL3-201ENST00000299633 SIK1P57059 783 aa11.41□□□□□ -0.58
HDGFL3-201ENST00000299633 KCNMA1Q12791 1236 aa11.41□□□□□ -0.58
HDGFL3-201ENST00000299633 PKN1Q16512 942 aa11.41□□□□□ -0.58
HDGFL3-201ENST00000299633 FAM102AQ5T9C2 384 aaPredicted RBP11.41□□□□□ -0.58
HDGFL3-201ENST00000299633 ARMC6Q6NXE6 501 aa11.41□□□□□ -0.58
HDGFL3-201ENST00000299633 PID1Q7Z2X4 250 aa11.41□□□□□ -0.58
HDGFL3-201ENST00000299633 CLN6Q9NWW5 311 aa11.41□□□□□ -0.58
HDGFL3-201ENST00000299633 IFNA7P01567 189 aa11.41□□□□□ -0.58
HDGFL3-201ENST00000299633 GEMIN4P57678 1058 aaKnown RBP11.41□□□□□ -0.58
HDGFL3-201ENST00000299633 VEPH1Q14D04 833 aa11.41□□□□□ -0.58
HDGFL3-201ENST00000299633 ATP6AP1LQ52LC2 224 aa11.41□□□□□ -0.58
HDGFL3-201ENST00000299633 RGS14O43566 566 aa11.41□□□□□ -0.58
HDGFL3-201ENST00000299633 BNIP1Q12981 228 aa11.41□□□□□ -0.58
HDGFL3-201ENST00000299633 DCAF15Q66K64 600 aa11.41□□□□□ -0.58
HDGFL3-201ENST00000299633 RAD9BQ6WBX8 426 aa11.41□□□□□ -0.58
HDGFL3-201ENST00000299633 SH3RF3Q8TEJ3 882 aaPredicted RBP11.41□□□□□ -0.58
HDGFL3-201ENST00000299633 RAB6BQ9NRW1 208 aa11.41□□□□□ -0.58
HDGFL3-201ENST00000299633 POLIQ9UNA4 740 aa11.41□□□□□ -0.58
HDGFL3-201ENST00000299633 LYNP07948 512 aa11.41□□□□□ -0.58
HDGFL3-201ENST00000299633 TWF1Q12792 350 aa11.41□□□□□ -0.58
HDGFL3-201ENST00000299633 UNC13DQ70J99 1090 aa11.41□□□□□ -0.58
HDGFL3-201ENST00000299633 OR2L5Q8NG80 312 aa11.41□□□□□ -0.58
HDGFL3-201ENST00000299633 SNIP1Q8TAD8 396 aaKnown RBP11.41□□□□□ -0.58
HDGFL3-201ENST00000299633 PLEKHG1Q9ULL1 1385 aa11.41□□□□□ -0.58
HDGFL3-201ENST00000299633 TSPAN1O60635 241 aa11.41□□□□□ -0.58
HDGFL3-201ENST00000299633 SLC9A3P48764 834 aa11.41□□□□□ -0.58
HDGFL3-201ENST00000299633 CDK8P49336 464 aa11.41□□□□□ -0.58
HDGFL3-201ENST00000299633 CYP24A1Q07973 514 aa11.41□□□□□ -0.58
HDGFL3-201ENST00000299633 FAM83EQ2M2I3 478 aa11.41□□□□□ -0.58
HDGFL3-201ENST00000299633 PREPLQ4J6C6 727 aaPredicted RBP11.41□□□□□ -0.58
HDGFL3-201ENST00000299633 CDKL4Q5MAI5 379 aa11.41□□□□□ -0.58
HDGFL3-201ENST00000299633 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.41□□□□□ -0.581e-6■□□□□ 9.8
HDGFL3-201ENST00000299633 MIGA2Q7L4E1 593 aa11.41□□□□□ -0.58
HDGFL3-201ENST00000299633 UGT2B28Q9BY64 529 aa11.41□□□□□ -0.58
HDGFL3-201ENST00000299633 CYP3A43Q9HB55 503 aa11.41□□□□□ -0.58
HDGFL3-201ENST00000299633 AK5Q9Y6K8 562 aa11.41□□□□□ -0.58
HDGFL3-201ENST00000299633 INO80Q9ULG1 1556 aaPredicted RBP11.41□□□□□ -0.58
HDGFL3-201ENST00000299633 SKIV2LQ15477 1246 aaKnown RBP11.41□□□□□ -0.58
HDGFL3-201ENST00000299633 ZNF655Q8N720 491 aaPredicted RBP11.41□□□□□ -0.58
HDGFL3-201ENST00000299633 STAT3P40763 770 aa11.41□□□□□ -0.58
HDGFL3-201ENST00000299633 ITFG2Q969R8 447 aa11.41□□□□□ -0.58
HDGFL3-201ENST00000299633 EHD4Q9H223 541 aa11.41□□□□□ -0.58
HDGFL3-201ENST00000299633 LYVE1Q9Y5Y7 322 aa11.41□□□□□ -0.58
HDGFL3-201ENST00000299633 KCNK1O00180 336 aa11.4□□□□□ -0.58
HDGFL3-201ENST00000299633 PTPN4P29074 926 aa11.4□□□□□ -0.58
HDGFL3-201ENST00000299633 PTPN7P35236 360 aa11.4□□□□□ -0.58
HDGFL3-201ENST00000299633 CCNA1P78396 465 aa11.4□□□□□ -0.58
HDGFL3-201ENST00000299633 ERO1BQ86YB8 467 aa11.4□□□□□ -0.58
HDGFL3-201ENST00000299633 TRIM48Q8IWZ4 208 aa11.4□□□□□ -0.58
HDGFL3-201ENST00000299633 ARHGEF26Q96DR7 871 aa11.4□□□□□ -0.58
HDGFL3-201ENST00000299633 TMEM237Q96Q45 408 aa11.4□□□□□ -0.58
HDGFL3-201ENST00000299633 SAV1Q9H4B6 383 aaPredicted RBP11.4□□□□□ -0.58
HDGFL3-201ENST00000299633 DOLKQ9UPQ8 538 aa11.4□□□□□ -0.58
HDGFL3-201ENST00000299633 ABCB11O95342 1321 aa11.4□□□□□ -0.58
HDGFL3-201ENST00000299633 PPRC1Q5VV67 1664 aaKnown RBP11.4□□□□□ -0.58
HDGFL3-201ENST00000299633 C15orf38-AP3S2A0A0A6YYH1 394 aa11.4□□□□□ -0.58
HDGFL3-201ENST00000299633 CHURC1-FNTBB4DL54 471 aa11.4□□□□□ -0.58
HDGFL3-201ENST00000299633 NEK6Q9HC98 313 aa11.4□□□□□ -0.58
HDGFL3-201ENST00000299633 UBQLN1Q9UMX0 589 aaKnown RBP11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms