RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 GAS6Q14393 721 aa13.47□□□□□ -0.25
CLK3-224ENST00000568605 EIF4HQ15056 248 aaKnown RBP13.47□□□□□ -0.25
CLK3-224ENST00000568605 FAM133BQ5BKY9 247 aaKnown RBP13.47□□□□□ -0.25
CLK3-224ENST00000568605 EOGTQ5NDL2 527 aa13.47□□□□□ -0.25
CLK3-224ENST00000568605 RABGAP1LQ5R372 815 aa13.47□□□□□ -0.25
CLK3-224ENST00000568605 MPP7Q5T2T1 576 aa13.47□□□□□ -0.25
CLK3-224ENST00000568605 ACBD5Q5T8D3 534 aaPredicted RBP13.47□□□□□ -0.25
CLK3-224ENST00000568605 MON1BQ7L1V2 547 aa13.47□□□□□ -0.25
CLK3-224ENST00000568605 SYT13Q7L8C5 426 aa13.47□□□□□ -0.25
CLK3-224ENST00000568605 PHTF2Q8N3S3 785 aa13.47□□□□□ -0.25
CLK3-224ENST00000568605 ZNF513Q8N8E2 541 aaPredicted RBP13.47□□□□□ -0.25
CLK3-224ENST00000568605 USP33Q8TEY7 942 aa13.47□□□□□ -0.25
CLK3-224ENST00000568605 TRIM11Q96F44 468 aa13.47□□□□□ -0.25
CLK3-224ENST00000568605 VCPIP1Q96JH7 1222 aa13.47□□□□□ -0.25
CLK3-224ENST00000568605 PCDHB18PQ96TA0 734 aa13.47□□□□□ -0.25
CLK3-224ENST00000568605 MMP17Q9ULZ9 603 aa13.47□□□□□ -0.25
CLK3-224ENST00000568605 SLC27A6Q9Y2P4 619 aa13.47□□□□□ -0.25
CLK3-224ENST00000568605 PCDHGA2Q9Y5H1 932 aa13.47□□□□□ -0.25
CLK3-224ENST00000568605 FAM170AA1A519 330 aa13.46□□□□□ -0.25
CLK3-224ENST00000568605 K7EQS6 105 aa13.46□□□□□ -0.25
CLK3-224ENST00000568605 NPC1O15118 1278 aa13.46□□□□□ -0.25
CLK3-224ENST00000568605 TSPAN3O60637 253 aa13.46□□□□□ -0.25
CLK3-224ENST00000568605 TBL1XO60907 577 aa13.46□□□□□ -0.25
CLK3-224ENST00000568605 GYPCP04921 128 aa13.46□□□□□ -0.25
CLK3-224ENST00000568605 SERPING1P05155 500 aa13.46□□□□□ -0.25
CLK3-224ENST00000568605 KRT3P12035 628 aa13.46□□□□□ -0.25
CLK3-224ENST00000568605 GZMAP12544 262 aa13.46□□□□□ -0.25
CLK3-224ENST00000568605 RDXP35241 583 aaKnown RBP13.46□□□□□ -0.25
CLK3-224ENST00000568605 FLT3P36888 993 aa13.46□□□□□ -0.25
CLK3-224ENST00000568605 PLA2G5P39877 138 aa13.46□□□□□ -0.25
CLK3-224ENST00000568605 PITX1P78337 314 aaPredicted RBP13.46□□□□□ -0.25
CLK3-224ENST00000568605 CDH18Q13634 790 aa13.46□□□□□ -0.25
CLK3-224ENST00000568605 TSR1Q2NL82 804 aaKnown RBP13.46□□□□□ -0.25
CLK3-224ENST00000568605 C2orf27AQ580R0 203 aa13.46□□□□□ -0.25
CLK3-224ENST00000568605 MS4A13Q5J8X5 152 aa13.46□□□□□ -0.25
CLK3-224ENST00000568605 PIK3R6Q5UE93 754 aa13.46□□□□□ -0.25
CLK3-224ENST00000568605 RAP1GAP2Q684P5 730 aa13.46□□□□□ -0.25
CLK3-224ENST00000568605 SDE2Q6IQ49 451 aa13.46□□□□□ -0.25
CLK3-224ENST00000568605 ACAD10Q6JQN1 1059 aa13.46□□□□□ -0.25
CLK3-224ENST00000568605 RFWD3Q6PCD5 774 aa13.46□□□□□ -0.25
CLK3-224ENST00000568605 SARM1Q6SZW1 724 aa13.46□□□□□ -0.25
CLK3-224ENST00000568605 MFN1Q8IWA4 741 aa13.46□□□□□ -0.25
CLK3-224ENST00000568605 CAMKK1Q8N5S9 505 aa13.46□□□□□ -0.25
CLK3-224ENST00000568605 WFIKKN2Q8TEU8 576 aa13.46□□□□□ -0.25
CLK3-224ENST00000568605 CPLX3Q8WVH0 158 aa13.46□□□□□ -0.25
CLK3-224ENST00000568605 EZH1Q92800 747 aaPredicted RBP13.46□□□□□ -0.25
CLK3-224ENST00000568605 NT5C3BQ969T7 300 aa13.46□□□□□ -0.25
CLK3-224ENST00000568605 SYT11Q9BT88 431 aa13.46□□□□□ -0.25
CLK3-224ENST00000568605 ZSCAN32Q9NX65 697 aa13.46□□□□□ -0.25
CLK3-224ENST00000568605 TMEM59LQ9UK28 342 aa13.46□□□□□ -0.25
CLK3-224ENST00000568605 TNRC6BQ9UPQ9 1833 aaKnown RBP13.46□□□□□ -0.26
CLK3-224ENST00000568605 MYBL1P10243 752 aa13.45□□□□□ -0.26
CLK3-224ENST00000568605 PDGFRAP16234 1089 aa13.45□□□□□ -0.26
CLK3-224ENST00000568605 TACR2P21452 398 aa13.45□□□□□ -0.26
CLK3-224ENST00000568605 GPD1P21695 349 aa13.45□□□□□ -0.26
CLK3-224ENST00000568605 SLC6A4P31645 630 aa13.45□□□□□ -0.26
CLK3-224ENST00000568605 CASP14P31944 242 aa13.45□□□□□ -0.26
CLK3-224ENST00000568605 TIE1P35590 1138 aa13.45□□□□□ -0.26
CLK3-224ENST00000568605 NBL1P41271 181 aa13.45□□□□□ -0.26
CLK3-224ENST00000568605 PTPN9P43378 593 aa13.45□□□□□ -0.26
CLK3-224ENST00000568605 EIF4EBP2Q13542 120 aaPredicted RBP13.45□□□□□ -0.26
CLK3-224ENST00000568605 DMC1Q14565 340 aa13.45□□□□□ -0.26
CLK3-224ENST00000568605 ARL13BQ3SXY8 428 aa13.45□□□□□ -0.26
CLK3-224ENST00000568605 E4F1Q66K89 784 aaPredicted RBP13.45□□□□□ -0.26
CLK3-224ENST00000568605 NADSYN1Q6IA69 706 aa13.45□□□□□ -0.26
CLK3-224ENST00000568605 VSTM4Q8IW00 320 aa13.45□□□□□ -0.26
CLK3-224ENST00000568605 MAML2Q8IZL2 1156 aaPredicted RBP13.45□□□□□ -0.26
CLK3-224ENST00000568605 LGI2Q8N0V4 545 aa13.45□□□□□ -0.26
CLK3-224ENST00000568605 AHI1Q8N157 1196 aa13.45□□□□□ -0.26
CLK3-224ENST00000568605 ALLCQ8N6M5 410 aa13.45□□□□□ -0.26
CLK3-224ENST00000568605 ATRIPQ8WXE1 791 aa13.45□□□□□ -0.26
CLK3-224ENST00000568605 CFAP57Q96MR6 1250 aa13.45□□□□□ -0.26
CLK3-224ENST00000568605 PRICKLE1Q96MT3 831 aaPredicted RBP13.45□□□□□ -0.26
CLK3-224ENST00000568605 TBCBQ99426 244 aa13.45□□□□□ -0.26
CLK3-224ENST00000568605 TRIM5Q9C035 493 aa13.45□□□□□ -0.26
CLK3-224ENST00000568605 SEMA4AQ9H3S1 761 aa13.45□□□□□ -0.26
CLK3-224ENST00000568605 WDCPQ9H6R7 721 aa13.45□□□□□ -0.26
CLK3-224ENST00000568605 POLMQ9NP87 494 aaPredicted RBP13.45□□□□□ -0.26
CLK3-224ENST00000568605 PIGVQ9NUD9 493 aa13.45□□□□□ -0.26
CLK3-224ENST00000568605 FAM86C1Q9NVL1 165 aa13.45□□□□□ -0.26
CLK3-224ENST00000568605 ZNHIT6Q9NWK9 470 aaKnown RBP13.45□□□□□ -0.26
CLK3-224ENST00000568605 FBXO10Q9UK96 956 aa13.45□□□□□ -0.26
CLK3-224ENST00000568605 STARD13Q9Y3M8 1113 aa13.45□□□□□ -0.26
CLK3-224ENST00000568605 SCINQ9Y6U3 715 aa13.45□□□□□ -0.26
CLK3-224ENST00000568605 TP53BP1Q12888 1972 aaPredicted RBP13.44□□□□□ -0.26
CLK3-224ENST00000568605 CCDC163A0A0D9SF12 145 aa13.44□□□□□ -0.26
CLK3-224ENST00000568605 A0A1B0GVM2 712 aa13.44□□□□□ -0.26
CLK3-224ENST00000568605 TCAF2A6NFQ2 919 aa13.44□□□□□ -0.26
CLK3-224ENST00000568605 C2CD4BA6NLJ0 364 aa13.44□□□□□ -0.26
CLK3-224ENST00000568605 TMCO5BA8MYB1 307 aa13.44□□□□□ -0.26
CLK3-224ENST00000568605 GFRA2O00451 464 aa13.44□□□□□ -0.26
CLK3-224ENST00000568605 ZBTB24O43167 697 aaPredicted RBP13.44□□□□□ -0.26
CLK3-224ENST00000568605 RTN2O75298 545 aa13.44□□□□□ -0.26
CLK3-224ENST00000568605 ALDH1A2O94788 518 aa13.44□□□□□ -0.26
CLK3-224ENST00000568605 LUC7L3O95232 432 aaKnown RBP13.44□□□□□ -0.26
CLK3-224ENST00000568605 KLF8O95600 359 aaPredicted RBP13.44□□□□□ -0.26
CLK3-224ENST00000568605 APBB3O95704 486 aa13.44□□□□□ -0.26
CLK3-224ENST00000568605 HOXA6P31267 233 aa13.44□□□□□ -0.26
CLK3-224ENST00000568605 KIR2DL1P43626 348 aaPredicted RBP13.44□□□□□ -0.26
CLK3-224ENST00000568605 CXCR3P49682 368 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms