RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 TMEM106CQ9BVX2 250 aa14.23□□□□□ -0.13
PTPRF-202ENST00000372405 OSBPL2Q9H1P3 480 aa14.23□□□□□ -0.13
PTPRF-202ENST00000372405 GOLGA6CA6NDK9 693 aa14.23□□□□□ -0.13
PTPRF-202ENST00000372405 KCNU1A8MYU2 1149 aa14.23□□□□□ -0.13
PTPRF-202ENST00000372405 PAGE1O75459 146 aa14.23□□□□□ -0.13
PTPRF-202ENST00000372405 BANF1O75531 89 aa14.23□□□□□ -0.13
PTPRF-202ENST00000372405 RTN3O95197 1032 aaPredicted RBP14.23□□□□□ -0.13
PTPRF-202ENST00000372405 SEC24AO95486 1093 aa14.23□□□□□ -0.13
PTPRF-202ENST00000372405 TBX18O95935 607 aa14.23□□□□□ -0.13
PTPRF-202ENST00000372405 GOLGA6DP0CG33 693 aa14.23□□□□□ -0.13
PTPRF-202ENST00000372405 MAGEA4P43358 317 aa14.23□□□□□ -0.13
PTPRF-202ENST00000372405 EIF3BP55884 814 aaKnown RBP14.23□□□□□ -0.13
PTPRF-202ENST00000372405 BASP1P80723 227 aaKnown RBP14.23□□□□□ -0.13
PTPRF-202ENST00000372405 DSG1Q02413 1049 aa14.23□□□□□ -0.13
PTPRF-202ENST00000372405 PRKD1Q15139 912 aaPredicted RBP14.23□□□□□ -0.13
PTPRF-202ENST00000372405 BRMS1LQ5PSV4 323 aa14.23□□□□□ -0.13
PTPRF-202ENST00000372405 FNBP1LQ5T0N5 605 aa14.23□□□□□ -0.13
PTPRF-202ENST00000372405 SYCP2LQ5T4T6 812 aa14.23□□□□□ -0.13
PTPRF-202ENST00000372405 PCGF5Q86SE9 256 aa14.23□□□□□ -0.13
PTPRF-202ENST00000372405 HOOK3Q86VS8 718 aa14.23□□□□□ -0.13
PTPRF-202ENST00000372405 GIPC2Q8TF65 315 aa14.23□□□□□ -0.13
PTPRF-202ENST00000372405 ATP6V1G3Q96LB4 118 aa14.23□□□□□ -0.13
PTPRF-202ENST00000372405 WDR83Q9BRX9 315 aaKnown RBP14.23□□□□□ -0.13
PTPRF-202ENST00000372405 SAYSD1Q9NPB0 183 aa14.23□□□□□ -0.13
PTPRF-202ENST00000372405 IL23AQ9NPF7 189 aa14.23□□□□□ -0.13
PTPRF-202ENST00000372405 GOLGA6AQ9NYA3 693 aa14.23□□□□□ -0.13
PTPRF-202ENST00000372405 PAK5Q9P286 719 aa14.23□□□□□ -0.13
PTPRF-202ENST00000372405 SHROOM3Q8TF72 1996 aa14.22□□□□□ -0.13
PTPRF-202ENST00000372405 EFCAB14O75071 495 aa14.22□□□□□ -0.13
PTPRF-202ENST00000372405 GCATO75600 419 aa14.22□□□□□ -0.13
PTPRF-202ENST00000372405 MYZAPP0CAP1 466 aa14.22□□□□□ -0.13
PTPRF-202ENST00000372405 CCR1P32246 355 aa14.22□□□□□ -0.13
PTPRF-202ENST00000372405 PPP2R5DQ14738 602 aa14.22□□□□□ -0.13
PTPRF-202ENST00000372405 KRT71Q3SY84 523 aa14.22□□□□□ -0.13
PTPRF-202ENST00000372405 HP1BP3Q5SSJ5 553 aaPredicted RBP14.22□□□□□ -0.13
PTPRF-202ENST00000372405 FAXCQ5TGI0 409 aa14.22□□□□□ -0.13
PTPRF-202ENST00000372405 MANEALQ5VSG8 457 aa14.22□□□□□ -0.13
PTPRF-202ENST00000372405 KIAA1841Q6NSI8 718 aa14.22□□□□□ -0.13
PTPRF-202ENST00000372405 TFB1MQ8WVM0 346 aaKnown RBP14.22□□□□□ -0.13
PTPRF-202ENST00000372405 SLC39A13Q96H72 371 aa14.22□□□□□ -0.13
PTPRF-202ENST00000372405 TMEM169Q96HH4 297 aa14.22□□□□□ -0.13
PTPRF-202ENST00000372405 FCRL2Q96LA5 508 aaPredicted RBP14.22□□□□□ -0.13
PTPRF-202ENST00000372405 HAPLN3Q96S86 360 aa14.22□□□□□ -0.13
PTPRF-202ENST00000372405 EPAS1Q99814 870 aa14.22□□□□□ -0.13
PTPRF-202ENST00000372405 PRDM12Q9H4Q4 367 aa14.22□□□□□ -0.13
PTPRF-202ENST00000372405 RAB6BQ9NRW1 208 aa14.22□□□□□ -0.13
PTPRF-202ENST00000372405 MTPAPQ9NVV4 582 aaKnown RBP eCLIP14.22□□□□□ -0.13
PTPRF-202ENST00000372405 DOCK4Q8N1I0 1966 aa14.22□□□□□ -0.13
PTPRF-202ENST00000372405 C5orf60A6NFR6 353 aa14.22□□□□□ -0.13
PTPRF-202ENST00000372405 SLC38A8A6NNN8 435 aa14.22□□□□□ -0.13
PTPRF-202ENST00000372405 HACD1B0YJ81 288 aa14.22□□□□□ -0.13
PTPRF-202ENST00000372405 BAIAP3O94812 1187 aa14.22□□□□□ -0.13
PTPRF-202ENST00000372405 ABLIM3O94929 683 aa14.22□□□□□ -0.13
PTPRF-202ENST00000372405 METTL18O95568 372 aa14.22□□□□□ -0.13
PTPRF-202ENST00000372405 ZDHHC11BP0C7U3 371 aa14.22□□□□□ -0.13
PTPRF-202ENST00000372405 LINC00271P0C7V0 271 aa14.22□□□□□ -0.13
PTPRF-202ENST00000372405 EN2P19622 333 aaPredicted RBP14.22□□□□□ -0.13
PTPRF-202ENST00000372405 EPHB2P29323 1055 aa14.22□□□□□ -0.13
PTPRF-202ENST00000372405 IFFO1Q0D2I5 559 aa14.22□□□□□ -0.13
PTPRF-202ENST00000372405 MTM1Q13496 603 aa14.22□□□□□ -0.13
PTPRF-202ENST00000372405 GLIPR1L2Q4G1C9 344 aa14.22□□□□□ -0.13
PTPRF-202ENST00000372405 ARHGAP18Q8N392 663 aa14.22□□□□□ -0.13
PTPRF-202ENST00000372405 EPS8L3Q8TE67 593 aaKnown RBP14.22□□□□□ -0.13
PTPRF-202ENST00000372405 HTR3CQ8WXA8 447 aa14.22□□□□□ -0.13
PTPRF-202ENST00000372405 SERPINB11Q96P15 392 aa14.22□□□□□ -0.13
PTPRF-202ENST00000372405 TMEM109Q9BVC6 243 aa14.22□□□□□ -0.13
PTPRF-202ENST00000372405 HERC2P3Q9BVR0 1158 aa14.22□□□□□ -0.13
PTPRF-202ENST00000372405 TTLL2Q9BWV7 592 aa14.22□□□□□ -0.13
PTPRF-202ENST00000372405 KLC2Q9H0B6 622 aa14.22□□□□□ -0.13
PTPRF-202ENST00000372405 SIK2Q9H0K1 926 aa14.22□□□□□ -0.13
PTPRF-202ENST00000372405 CLIC5Q9NZA1 410 aa14.22□□□□□ -0.13
PTPRF-202ENST00000372405 TLR6Q9Y2C9 796 aa14.22□□□□□ -0.13
PTPRF-202ENST00000372405 ALOX15BO15296 676 aa14.21□□□□□ -0.13
PTPRF-202ENST00000372405 LAG3P18627 525 aa14.21□□□□□ -0.13
PTPRF-202ENST00000372405 GLUD2P49448 558 aa14.21□□□□□ -0.13
PTPRF-202ENST00000372405 ZNF135P52742 658 aaPredicted RBP14.21□□□□□ -0.13
PTPRF-202ENST00000372405 RPL10AP62906 217 aaKnown RBP14.21□□□□□ -0.13
PTPRF-202ENST00000372405 GABPB1Q06547 395 aaPredicted RBP14.21□□□□□ -0.13
PTPRF-202ENST00000372405 TERF2Q15554 542 aa14.21□□□□□ -0.13
PTPRF-202ENST00000372405 HIF1AQ16665 826 aa14.21□□□□□ -0.13
PTPRF-202ENST00000372405 HEATR6Q6AI08 1181 aaKnown RBP14.21□□□□□ -0.13
PTPRF-202ENST00000372405 CCDC13Q8IYE1 715 aa14.21□□□□□ -0.13
PTPRF-202ENST00000372405 ZNF461Q8TAF7 563 aa14.21□□□□□ -0.13
PTPRF-202ENST00000372405 AUTS2Q8WXX7 1259 aa14.21□□□□□ -0.13
PTPRF-202ENST00000372405 P2RY11Q96G91 374 aa14.21□□□□□ -0.13
PTPRF-202ENST00000372405 CENPHQ9H3R5 247 aa14.21□□□□□ -0.13
PTPRF-202ENST00000372405 ETNK1Q9HBU6 452 aa14.21□□□□□ -0.13
PTPRF-202ENST00000372405 SPG21Q9NZD8 308 aa14.21□□□□□ -0.13
PTPRF-202ENST00000372405 AFF4Q9UHB7 1163 aaKnown RBP14.21□□□□□ -0.13
PTPRF-202ENST00000372405 HS3ST4Q9Y661 456 aa14.21□□□□□ -0.13
PTPRF-202ENST00000372405 E7ESA3 106 aa14.2□□□□□ -0.14
PTPRF-202ENST00000372405 NDC80O14777 642 aa14.2□□□□□ -0.14
PTPRF-202ENST00000372405 CHADO15335 359 aa14.2□□□□□ -0.14
PTPRF-202ENST00000372405 SRGAP2BP0DMP2 458 aa14.2□□□□□ -0.14
PTPRF-202ENST00000372405 HOXC13P31276 330 aa14.2□□□□□ -0.14
PTPRF-202ENST00000372405 MAGEA6P43360 314 aa14.2□□□□□ -0.14
PTPRF-202ENST00000372405 AP1B1Q10567 949 aa14.2□□□□□ -0.14
PTPRF-202ENST00000372405 WASHC5Q12768 1159 aa14.2□□□□□ -0.14
PTPRF-202ENST00000372405 EFEMP1Q12805 493 aa14.2□□□□□ -0.14
PTPRF-202ENST00000372405 PDIA2Q13087 525 aaKnown RBP14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms