RNA–Protein interactions for RNA: ENST00000329231.8

ATPAF1-201, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 2 BASIC

Gene ATPAF1, Length 1,241 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-201ENST00000329231 HJURPQ8NCD3 748 aaPredicted RBP28.67■■■□□ 2.18
ATPAF1-201ENST00000329231 MSANTD4Q8NCY6 345 aa28.67■■■□□ 2.18
ATPAF1-201ENST00000329231 ZNF397Q8NF99 534 aaPredicted RBP28.67■■■□□ 2.18
ATPAF1-201ENST00000329231 ERGIC2Q96RQ1 377 aa28.67■■■□□ 2.18
ATPAF1-201ENST00000329231 SLTMQ9NWH9 1034 aaKnown RBP eCLIP28.67■■■□□ 2.18
ATPAF1-201ENST00000329231 CACNA2D2Q9NY47 1150 aa28.67■■■□□ 2.18
ATPAF1-201ENST00000329231 SLC12A6Q9UHW9 1150 aa28.67■■■□□ 2.18
ATPAF1-201ENST00000329231 USP18Q9UMW8 372 aa28.67■■■□□ 2.18
ATPAF1-201ENST00000329231 A0A1W2PQF6 199 aa28.66■■■□□ 2.18
ATPAF1-201ENST00000329231 DCLK1O15075 740 aa28.66■■■□□ 2.18
ATPAF1-201ENST00000329231 TBL1XO60907 577 aa28.66■■■□□ 2.18
ATPAF1-201ENST00000329231 RHOBTB1O94844 696 aa28.66■■■□□ 2.18
ATPAF1-201ENST00000329231 ATP1A3P13637 1013 aa28.66■■■□□ 2.18
ATPAF1-201ENST00000329231 STAT1P42224 750 aa28.66■■■□□ 2.18
ATPAF1-201ENST00000329231 GABRB2P47870 512 aa28.66■■■□□ 2.18
ATPAF1-201ENST00000329231 SGSHP51688 502 aa28.66■■■□□ 2.18
ATPAF1-201ENST00000329231 SPEM2Q0P670 501 aa28.66■■■□□ 2.18
ATPAF1-201ENST00000329231 BYSLQ13895 437 aaKnown RBP28.66■■■□□ 2.18
ATPAF1-201ENST00000329231 ERICH1Q86X53 443 aa28.66■■■□□ 2.18
ATPAF1-201ENST00000329231 OLIG1Q8TAK6 271 aa28.66■■■□□ 2.18
ATPAF1-201ENST00000329231 WFIKKN2Q8TEU8 576 aa28.66■■■□□ 2.18
ATPAF1-201ENST00000329231 C18orf8Q96DM3 657 aa28.66■■■□□ 2.18
ATPAF1-201ENST00000329231 BTN2A3PQ96KV6 586 aa28.66■■■□□ 2.18
ATPAF1-201ENST00000329231 CIPCQ9C0C6 399 aa28.66■■■□□ 2.18
ATPAF1-201ENST00000329231 DDIT4Q9NX09 232 aa28.66■■■□□ 2.18
ATPAF1-201ENST00000329231 THAP10Q9P2Z0 257 aaPredicted RBP28.66■■■□□ 2.18
ATPAF1-201ENST00000329231 INVSQ9Y283 1065 aa28.66■■■□□ 2.18
ATPAF1-201ENST00000329231 DAB1O75553 588 aa28.65■■■□□ 2.18
ATPAF1-201ENST00000329231 MMEP08473 750 aa28.65■■■□□ 2.18
ATPAF1-201ENST00000329231 TGM1P22735 817 aa28.65■■■□□ 2.18
ATPAF1-201ENST00000329231 HLA-FP30511 346 aa28.65■■■□□ 2.18
ATPAF1-201ENST00000329231 PITX1P78337 314 aaPredicted RBP28.65■■■□□ 2.18
ATPAF1-201ENST00000329231 ARID5AQ03989 594 aa28.65■■■□□ 2.18
ATPAF1-201ENST00000329231 EIF4EBP2Q13542 120 aaPredicted RBP28.65■■■□□ 2.18
ATPAF1-201ENST00000329231 RNF43Q68DV7 783 aa28.65■■■□□ 2.18
ATPAF1-201ENST00000329231 DHX40Q8IX18 779 aaKnown RBP28.65■■■□□ 2.18
ATPAF1-201ENST00000329231 ATP6V0D2Q8N8Y2 350 aa28.65■■■□□ 2.18
ATPAF1-201ENST00000329231 SPACA7Q96KW9 195 aa28.65■■■□□ 2.18
ATPAF1-201ENST00000329231 FUCA2Q9BTY2 467 aa28.65■■■□□ 2.18
ATPAF1-201ENST00000329231 NUCKS1Q9H1E3 243 aaKnown RBP28.65■■■□□ 2.18
ATPAF1-201ENST00000329231 DUSP15Q9H1R2 295 aaPredicted RBP28.65■■■□□ 2.18
ATPAF1-201ENST00000329231 NOCTQ9UK39 431 aaKnown RBP28.65■■■□□ 2.18
ATPAF1-201ENST00000329231 STON1Q9Y6Q2 735 aa28.65■■■□□ 2.18
ATPAF1-201ENST00000329231 EML5Q05BV3 1969 aa28.64■■■□□ 2.18
ATPAF1-201ENST00000329231 SYCE3A1L190 88 aa28.64■■■□□ 2.18
ATPAF1-201ENST00000329231 GABRG2P18507 467 aa28.64■■■□□ 2.18
ATPAF1-201ENST00000329231 CCR1P32246 355 aa28.64■■■□□ 2.18
ATPAF1-201ENST00000329231 NOS2P35228 1153 aa28.64■■■□□ 2.18
ATPAF1-201ENST00000329231 SCNN1AP37088 669 aa28.64■■■□□ 2.18
ATPAF1-201ENST00000329231 ZNF165P49910 485 aa28.64■■■□□ 2.18
ATPAF1-201ENST00000329231 CDR2Q01850 454 aa28.64■■■□□ 2.18
ATPAF1-201ENST00000329231 STARD3Q14849 445 aa28.64■■■□□ 2.18
ATPAF1-201ENST00000329231 MS4A13Q5J8X5 152 aa28.64■■■□□ 2.18
ATPAF1-201ENST00000329231 DDX51Q8N8A6 666 aaKnown RBP eCLIP28.64■■■□□ 2.18
ATPAF1-201ENST00000329231 RNF34Q969K3 372 aa28.64■■■□□ 2.18
ATPAF1-201ENST00000329231 PARD6AQ9NPB6 346 aa28.64■■■□□ 2.18
ATPAF1-201ENST00000329231 ABCB8Q9NUT2 735 aa28.64■■■□□ 2.18
ATPAF1-201ENST00000329231 RRN3Q9NYV6 651 aa28.64■■■□□ 2.18
ATPAF1-201ENST00000329231 GGA2Q9UJY4 613 aa28.64■■■□□ 2.18
ATPAF1-201ENST00000329231 ZNF292O60281 2723 aa28.63■■■□□ 2.17
ATPAF1-201ENST00000329231 SYNJ2BP-COX16A0A087WUM0 186 aa28.63■■■□□ 2.17
ATPAF1-201ENST00000329231 WASH3PC4AMC7 463 aa28.63■■■□□ 2.17
ATPAF1-201ENST00000329231 EPN2O95208 641 aa28.63■■■□□ 2.17
ATPAF1-201ENST00000329231 ABCB4P21439 1286 aa28.63■■■□□ 2.17
ATPAF1-201ENST00000329231 TMEM215Q68D42 235 aa28.63■■■□□ 2.17
ATPAF1-201ENST00000329231 KIAA1211LQ6NV74 962 aa28.63■■■□□ 2.17
ATPAF1-201ENST00000329231 MFN1Q8IWA4 741 aa28.63■■■□□ 2.17
ATPAF1-201ENST00000329231 CCDC117Q8IWD4 279 aaPredicted RBP28.63■■■□□ 2.17
ATPAF1-201ENST00000329231 AHI1Q8N157 1196 aa28.63■■■□□ 2.17
ATPAF1-201ENST00000329231 SLC20A1Q8WUM9 679 aa28.63■■■□□ 2.17
ATPAF1-201ENST00000329231 PRICKLE1Q96MT3 831 aaPredicted RBP28.63■■■□□ 2.17
ATPAF1-201ENST00000329231 SEMA4GQ9NTN9 838 aa28.63■■■□□ 2.17
ATPAF1-201ENST00000329231 COX16Q9P0S2 106 aa28.63■■■□□ 2.17
ATPAF1-201ENST00000329231 STIM2Q9P246 746 aa28.63■■■□□ 2.17
ATPAF1-201ENST00000329231 XPO7Q9UIA9 1087 aaKnown RBP28.63■■■□□ 2.17
ATPAF1-201ENST00000329231 PCDHGA5Q9Y5G8 931 aa28.63■■■□□ 2.17
ATPAF1-201ENST00000329231 RAD54BQ9Y620 910 aa28.63■■■□□ 2.17
ATPAF1-201ENST00000329231 KCNU1A8MYU2 1149 aa28.62■■■□□ 2.17
ATPAF1-201ENST00000329231 PABPC1P11940 636 aaKnown RBP28.62■■■□□ 2.17
ATPAF1-201ENST00000329231 P2RY2P41231 377 aa28.62■■■□□ 2.17
ATPAF1-201ENST00000329231 MATKP42679 507 aa28.62■■■□□ 2.17
ATPAF1-201ENST00000329231 IL12RB1P42701 662 aa28.62■■■□□ 2.17
ATPAF1-201ENST00000329231 RPS24P62847 133 aaKnown RBP28.62■■■□□ 2.17
ATPAF1-201ENST00000329231 NOMO3P69849 1222 aa28.62■■■□□ 2.17
ATPAF1-201ENST00000329231 LMNB2Q03252 620 aa28.62■■■□□ 2.17
ATPAF1-201ENST00000329231 MTA1Q13330 715 aa28.62■■■□□ 2.17
ATPAF1-201ENST00000329231 ENPP2Q13822 863 aa28.62■■■□□ 2.17
ATPAF1-201ENST00000329231 ZNF234Q14588 700 aa28.62■■■□□ 2.17
ATPAF1-201ENST00000329231 CSRP2Q16527 193 aa28.62■■■□□ 2.17
ATPAF1-201ENST00000329231 NAA35Q5VZE5 725 aa28.62■■■□□ 2.17
ATPAF1-201ENST00000329231 CHST9Q7L1S5 443 aa28.62■■■□□ 2.17
ATPAF1-201ENST00000329231 KIAA0907Q7Z7F0 614 aaPredicted RBP28.62■■■□□ 2.17
ATPAF1-201ENST00000329231 CHSY1Q86X52 802 aa28.62■■■□□ 2.17
ATPAF1-201ENST00000329231 XYLT1Q86Y38 959 aa28.62■■■□□ 2.17
ATPAF1-201ENST00000329231 RLN3Q8WXF3 142 aa28.62■■■□□ 2.17
ATPAF1-201ENST00000329231 CPA5Q8WXQ8 436 aa28.62■■■□□ 2.17
ATPAF1-201ENST00000329231 ARRDC1-AS1Q9H2J1 176 aa28.62■■■□□ 2.17
ATPAF1-201ENST00000329231 CD248Q9HCU0 757 aa28.62■■■□□ 2.17
ATPAF1-201ENST00000329231 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP28.62■■■□□ 2.17
ATPAF1-201ENST00000329231 STAP1Q9ULZ2 295 aa28.62■■■□□ 2.17
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms