RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 PRDM13Q9H4Q3 707 aa8.2□□□□□ -1.1
NUP54-215ENST00000514313 ZNF703Q9H7S9 590 aaPredicted RBP8.2□□□□□ -1.1
NUP54-215ENST00000514313 PLEKHA5Q9HAU0 1116 aa8.2□□□□□ -1.1
NUP54-215ENST00000514313 ANKFY1Q9P2R3 1169 aa8.2□□□□□ -1.1
NUP54-215ENST00000514313 ORC3Q9UBD5 711 aaPredicted RBP8.2□□□□□ -1.1
NUP54-215ENST00000514313 NRBP1Q9UHY1 535 aa8.2□□□□□ -1.1
NUP54-215ENST00000514313 GDAQ9Y2T3 454 aa8.2□□□□□ -1.1
NUP54-215ENST00000514313 A0A0G2JLL6 359 aaPredicted RBP8.19□□□□□ -1.1
NUP54-215ENST00000514313 A6NCN8 305 aa8.19□□□□□ -1.1
NUP54-215ENST00000514313 F5H0A9 414 aaPredicted RBP8.19□□□□□ -1.1
NUP54-215ENST00000514313 CES2O00748 559 aa8.19□□□□□ -1.1
NUP54-215ENST00000514313 SPTLC2O15270 562 aa8.19□□□□□ -1.1
NUP54-215ENST00000514313 PNPLA4P41247 253 aa8.19□□□□□ -1.1
NUP54-215ENST00000514313 TXNL4AP83876 142 aaKnown RBP8.19□□□□□ -1.1
NUP54-215ENST00000514313 PDE1CQ14123 709 aaPredicted RBP8.19□□□□□ -1.1
NUP54-215ENST00000514313 KCTD2Q14681 263 aa8.19□□□□□ -1.1
NUP54-215ENST00000514313 TIGD2Q4W5G0 525 aa8.19□□□□□ -1.1
NUP54-215ENST00000514313 CBWD5Q5RIA9 395 aa8.19□□□□□ -1.1
NUP54-215ENST00000514313 LIPMQ5VYY2 423 aa8.19□□□□□ -1.1
NUP54-215ENST00000514313 Q6ZWC4 215 aa8.19□□□□□ -1.1
NUP54-215ENST00000514313 LRRC8DQ7L1W4 858 aa8.19□□□□□ -1.1
NUP54-215ENST00000514313 CHD1LQ86WJ1 897 aa8.19□□□□□ -1.1
NUP54-215ENST00000514313 PNPLA1Q8N8W4 532 aa8.19□□□□□ -1.1
NUP54-215ENST00000514313 ADAMTS18Q8TE60 1221 aa8.19□□□□□ -1.1
NUP54-215ENST00000514313 EXTL1Q92935 676 aa8.19□□□□□ -1.1
NUP54-215ENST00000514313 CDCP1Q9H5V8 836 aa8.19□□□□□ -1.1
NUP54-215ENST00000514313 STN1Q9H668 368 aaKnown RBP8.19□□□□□ -1.1
NUP54-215ENST00000514313 CCNL1Q9UK58 526 aaPredicted RBP8.19□□□□□ -1.1
NUP54-215ENST00000514313 PLSCR1O15162 318 aa8.18□□□□□ -1.1
NUP54-215ENST00000514313 TMPRSS11DO60235 418 aa8.18□□□□□ -1.1
NUP54-215ENST00000514313 HSP90AA1P07900 732 aaKnown RBP8.18□□□□□ -1.1
NUP54-215ENST00000514313 CYP3A4P08684 503 aa8.18□□□□□ -1.1
NUP54-215ENST00000514313 EGR2P11161 476 aaPredicted RBP8.18□□□□□ -1.1
NUP54-215ENST00000514313 ZFXP17010 805 aaPredicted RBP8.18□□□□□ -1.1
NUP54-215ENST00000514313 ZNF37AP17032 561 aaPredicted RBP8.18□□□□□ -1.1
NUP54-215ENST00000514313 CXCR5P32302 372 aa8.18□□□□□ -1.1
NUP54-215ENST00000514313 GGT5P36269 586 aa8.18□□□□□ -1.1
NUP54-215ENST00000514313 DIO1P49895 249 aa8.18□□□□□ -1.1
NUP54-215ENST00000514313 PSG6Q00889 435 aa8.18□□□□□ -1.1
NUP54-215ENST00000514313 TLE3Q04726 772 aa8.18□□□□□ -1.1
NUP54-215ENST00000514313 BMPR2Q13873 1038 aa8.18□□□□□ -1.1
NUP54-215ENST00000514313 PTPRRQ15256 657 aa8.18□□□□□ -1.1
NUP54-215ENST00000514313 USP39Q53GS9 565 aaKnown RBP8.18□□□□□ -1.1
NUP54-215ENST00000514313 NEK10Q6ZWH5 1172 aa8.18□□□□□ -1.1
NUP54-215ENST00000514313 SIRT6Q8N6T7 355 aa8.18□□□□□ -1.1
NUP54-215ENST00000514313 CHST13Q8NET6 341 aa8.18□□□□□ -1.1
NUP54-215ENST00000514313 GLMPQ8WWB7 406 aa8.18□□□□□ -1.1
NUP54-215ENST00000514313 Q96MF0 132 aa8.18□□□□□ -1.1
NUP54-215ENST00000514313 CLPBQ9H078 707 aa8.18□□□□□ -1.1
NUP54-215ENST00000514313 PDE11AQ9HCR9 933 aa8.18□□□□□ -1.1
NUP54-215ENST00000514313 MGAT4CQ9UBM8 478 aa8.18□□□□□ -1.1
NUP54-215ENST00000514313 VPS4AQ9UN37 437 aa8.18□□□□□ -1.1
NUP54-215ENST00000514313 RABGAP1Q9Y3P9 1069 aa8.18□□□□□ -1.1
NUP54-215ENST00000514313 PGPEP1LA6NFU8 196 aa8.17□□□□□ -1.1
NUP54-215ENST00000514313 GRM8O00222 908 aa8.17□□□□□ -1.1
NUP54-215ENST00000514313 USO1O60763 962 aaKnown RBP8.17□□□□□ -1.1
NUP54-215ENST00000514313 PRAMEF2O60811 474 aa8.17□□□□□ -1.1
NUP54-215ENST00000514313 MBPP02686 304 aaPredicted RBP8.17□□□□□ -1.1
NUP54-215ENST00000514313 TMIGD3P0DMS9 266 aaPredicted RBP8.17□□□□□ -1.1
NUP54-215ENST00000514313 NR2F6P10588 404 aa8.17□□□□□ -1.1
NUP54-215ENST00000514313 PCP4P48539 62 aa8.17□□□□□ -1.1
NUP54-215ENST00000514313 RAE1P78406 368 aaKnown RBP8.17□□□□□ -1.1
NUP54-215ENST00000514313 IRX6P78412 446 aaPredicted RBP8.17□□□□□ -1.1
NUP54-215ENST00000514313 TDGQ13569 410 aa8.17□□□□□ -1.1
NUP54-215ENST00000514313 THOC5Q13769 683 aaKnown RBP8.17□□□□□ -1.1
NUP54-215ENST00000514313 HAUS3Q68CZ6 603 aa8.17□□□□□ -1.1
NUP54-215ENST00000514313 DENND1BQ6P3S1 775 aa8.17□□□□□ -1.1
NUP54-215ENST00000514313 H1FNTQ75WM6 255 aaPredicted RBP8.17□□□□□ -1.1
NUP54-215ENST00000514313 R3HCC1LQ7Z5L2 792 aaKnown RBP8.17□□□□□ -1.1
NUP54-215ENST00000514313 LSM14AQ8ND56 463 aaKnown RBP8.17□□□□□ -1.1
NUP54-215ENST00000514313 OR52L2PQ8NGH6 319 aa8.17□□□□□ -1.1
NUP54-215ENST00000514313 TFAP2BQ92481 460 aa8.17□□□□□ -1.1
NUP54-215ENST00000514313 APOPT1Q96IL0 206 aa8.17□□□□□ -1.1
NUP54-215ENST00000514313 PPP1R10Q96QC0 940 aaKnown RBP8.17□□□□□ -1.1
NUP54-215ENST00000514313 AIFM2Q9BRQ8 373 aa8.17□□□□□ -1.1
NUP54-215ENST00000514313 FUZQ9BT04 418 aa8.17□□□□□ -1.1
NUP54-215ENST00000514313 ELOVL1Q9BW60 279 aa8.17□□□□□ -1.1
NUP54-215ENST00000514313 TLR8Q9NR97 1041 aaKnown RBP8.17□□□□□ -1.1
NUP54-215ENST00000514313 FZD1Q9UP38 647 aa8.17□□□□□ -1.1
NUP54-215ENST00000514313 SLC45A1Q9Y2W3 748 aa8.17□□□□□ -1.1
NUP54-215ENST00000514313 ANP32CO43423 234 aa8.16□□□□□ -1.1
NUP54-215ENST00000514313 TIMM44O43615 452 aa8.16□□□□□ -1.1
NUP54-215ENST00000514313 PEX1O43933 1283 aa8.16□□□□□ -1.1
NUP54-215ENST00000514313 TJP3O95049 919 aa8.16□□□□□ -1.1
NUP54-215ENST00000514313 TGM1P22735 817 aa8.16□□□□□ -1.1
NUP54-215ENST00000514313 TXKP42681 527 aa8.16□□□□□ -1.1
NUP54-215ENST00000514313 CCR9P51686 369 aa8.16□□□□□ -1.1
NUP54-215ENST00000514313 RPP30P78346 268 aaKnown RBP8.16□□□□□ -1.1
NUP54-215ENST00000514313 PRKG2Q13237 762 aa8.16□□□□□ -1.1
NUP54-215ENST00000514313 NFIL3Q16649 462 aa8.16□□□□□ -1.1
NUP54-215ENST00000514313 ITPRIPL1Q6GPH6 555 aa8.16□□□□□ -1.1
NUP54-215ENST00000514313 WDR93Q6P2C0 686 aa8.16□□□□□ -1.1
NUP54-215ENST00000514313 ARMC8Q8IUR7 673 aa8.16□□□□□ -1.1
NUP54-215ENST00000514313 TTC9BQ8N6N2 239 aa8.16□□□□□ -1.1
NUP54-215ENST00000514313 CCDC89Q8N998 374 aa8.16□□□□□ -1.1
NUP54-215ENST00000514313 NGDNQ8NEJ9 315 aaKnown RBP8.16□□□□□ -1.1
NUP54-215ENST00000514313 RP9Q8TA86 221 aaKnown RBP8.16□□□□□ -1.1
NUP54-215ENST00000514313 ADAMTS15Q8TE58 950 aa8.16□□□□□ -1.1
NUP54-215ENST00000514313 C8orf49Q96NF6 230 aa8.16□□□□□ -1.1
NUP54-215ENST00000514313 SNX15Q9NRS6 342 aa8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 83.4 ms