RNA–Protein interactions for RNA: ENST00000475146.1

CPNE1-223, Transcript of copine 1, human

TSL 3

Gene CPNE1, Length 627 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-223	ENST00000475146	HSF2BP	O75031	334 aa		24.98	■■□□□ 1.59
CPNE1-223	ENST00000475146	ADAM23	O75077	832 aa		24.98	■■□□□ 1.59
CPNE1-223	ENST00000475146	ALDH1A2	O94788	518 aa		24.98	■■□□□ 1.59
CPNE1-223	ENST00000475146	TRUB2	O95900	331 aa	Known RBP	24.98	■■□□□ 1.59
CPNE1-223	ENST00000475146	MOCS2	O96007	188 aa	Predicted RBP	24.98	■■□□□ 1.59
CPNE1-223	ENST00000475146	GLI1	P08151	1106 aa		24.98	■■□□□ 1.59
CPNE1-223	ENST00000475146	SOX5	P35711	763 aa		24.98	■■□□□ 1.59
CPNE1-223	ENST00000475146	WAS	P42768	502 aa		24.98	■■□□□ 1.59
CPNE1-223	ENST00000475146	ZNF165	P49910	485 aa		24.98	■■□□□ 1.59
CPNE1-223	ENST00000475146	OLFML1	Q6UWY5	402 aa		24.98	■■□□□ 1.59
CPNE1-223	ENST00000475146	APTX	Q7Z2E3	356 aa	Known RBP	24.98	■■□□□ 1.59
CPNE1-223	ENST00000475146	ARHGAP30	Q7Z6I6	1101 aa	Predicted RBP	24.98	■■□□□ 1.59
CPNE1-223	ENST00000475146	CHPF	Q8IZ52	775 aa		24.98	■■□□□ 1.59
CPNE1-223	ENST00000475146	DEFB106A	Q8N104	65 aa		24.98	■■□□□ 1.59
CPNE1-223	ENST00000475146	DCLK2	Q8N568	766 aa		24.98	■■□□□ 1.59
CPNE1-223	ENST00000475146	DDX1	Q92499	740 aa	Known RBP	24.98	■■□□□ 1.59
CPNE1-223	ENST00000475146	TMA16	Q96EY4	203 aa	Known RBP	24.98	■■□□□ 1.59
CPNE1-223	ENST00000475146	FAM204A	Q9H8W3	233 aa		24.98	■■□□□ 1.59
CPNE1-223	ENST00000475146	POLM	Q9NP87	494 aa	Predicted RBP	24.98	■■□□□ 1.59
CPNE1-223	ENST00000475146	EBF1	Q9UH73	591 aa		24.98	■■□□□ 1.59
CPNE1-223	ENST00000475146	SLC27A6	Q9Y2P4	619 aa		24.98	■■□□□ 1.59
CPNE1-223	ENST00000475146	RIF1	Q5UIP0	2472 aa	Known RBP	24.98	■■□□□ 1.59
CPNE1-223	ENST00000475146	PTPRZ1	P23471	2315 aa	Predicted RBP	24.97	■■□□□ 1.59
CPNE1-223	ENST00000475146	GOLGA6L7	A0A1B0GV03	622 aa		24.97	■■□□□ 1.59
CPNE1-223	ENST00000475146	SYCE3	A1L190	88 aa		24.97	■■□□□ 1.59
CPNE1-223	ENST00000475146	IRAK2	O43187	625 aa		24.97	■■□□□ 1.59
CPNE1-223	ENST00000475146	APOE	P02649	317 aa		24.97	■■□□□ 1.59
CPNE1-223	ENST00000475146	MME	P08473	750 aa		24.97	■■□□□ 1.59
CPNE1-223	ENST00000475146	HNRNPL	P14866	589 aa	Known RBP eCLIP	24.97	■■□□□ 1.59
CPNE1-223	ENST00000475146	PTMS	P20962	102 aa		24.97	■■□□□ 1.59
CPNE1-223	ENST00000475146	HOXD9	P28356	352 aa	Predicted RBP	24.97	■■□□□ 1.59
CPNE1-223	ENST00000475146	NTSR1	P30989	418 aa		24.97	■■□□□ 1.59
CPNE1-223	ENST00000475146	CDH5	P33151	784 aa	Predicted RBP	24.97	■■□□□ 1.59
CPNE1-223	ENST00000475146	STAT1	P42224	750 aa		24.97	■■□□□ 1.59
CPNE1-223	ENST00000475146	JAM2	P57087	298 aa		24.97	■■□□□ 1.59
CPNE1-223	ENST00000475146	CDK17	Q00537	523 aa		24.97	■■□□□ 1.59
CPNE1-223	ENST00000475146	LAIR1	Q6GTX8	287 aa		24.97	■■□□□ 1.59
CPNE1-223	ENST00000475146	SDE2	Q6IQ49	451 aa		24.97	■■□□□ 1.59
CPNE1-223	ENST00000475146	RFWD3	Q6PCD5	774 aa		24.97	■■□□□ 1.59
CPNE1-223	ENST00000475146	ANKS1B	Q7Z6G8	1248 aa		24.97	■■□□□ 1.59
CPNE1-223	ENST00000475146	SLC39A13	Q96H72	371 aa		24.97	■■□□□ 1.59
CPNE1-223	ENST00000475146	SLC2A13	Q96QE2	648 aa		24.97	■■□□□ 1.59
CPNE1-223	ENST00000475146	ERGIC2	Q96RQ1	377 aa		24.97	■■□□□ 1.59
CPNE1-223	ENST00000475146	DDX50	Q9BQ39	737 aa	Known RBP	24.97	■■□□□ 1.59
CPNE1-223	ENST00000475146	TPSD1	Q9BZJ3	242 aa		24.97	■■□□□ 1.59
CPNE1-223	ENST00000475146	HCN2	Q9UL51	889 aa		24.97	■■□□□ 1.59
CPNE1-223	ENST00000475146	CLEC4E	Q9ULY5	219 aa		24.97	■■□□□ 1.59
CPNE1-223	ENST00000475146	GPR179	Q6PRD1	2367 aa		24.96	■■□□□ 1.59
CPNE1-223	ENST00000475146	SYNJ2BP-COX16	A0A087WUM0	186 aa		24.96	■■□□□ 1.59
CPNE1-223	ENST00000475146	LSM8	O95777	96 aa	Known RBP	24.96	■■□□□ 1.59
CPNE1-223	ENST00000475146	HOXB2	P14652	356 aa		24.96	■■□□□ 1.59
CPNE1-223	ENST00000475146	SLC6A4	P31645	630 aa		24.96	■■□□□ 1.59
CPNE1-223	ENST00000475146	PITX1	P78337	314 aa	Predicted RBP	24.96	■■□□□ 1.59
CPNE1-223	ENST00000475146	SLC6A3	Q01959	620 aa		24.96	■■□□□ 1.59
CPNE1-223	ENST00000475146	GEN1	Q17RS7	908 aa		24.96	■■□□□ 1.59
CPNE1-223	ENST00000475146	FAM133B	Q5BKY9	247 aa	Known RBP	24.96	■■□□□ 1.59
CPNE1-223	ENST00000475146	MDGA1	Q8NFP4	955 aa		24.96	■■□□□ 1.59
CPNE1-223	ENST00000475146	SLC20A1	Q8WUM9	679 aa		24.96	■■□□□ 1.59
CPNE1-223	ENST00000475146	AZIN2	Q96A70	460 aa		24.96	■■□□□ 1.59
CPNE1-223	ENST00000475146	ACOX2	Q99424	681 aa		24.96	■■□□□ 1.59
CPNE1-223	ENST00000475146	FUCA2	Q9BTY2	467 aa		24.96	■■□□□ 1.59
CPNE1-223	ENST00000475146	SLC2A11	Q9BYW1	496 aa		24.96	■■□□□ 1.59
CPNE1-223	ENST00000475146	COX16	Q9P0S2	106 aa		24.96	■■□□□ 1.59
CPNE1-223	ENST00000475146	BCCIP	Q9P287	314 aa	Known RBP eCLIP	24.96	■■□□□ 1.59	5e-7	■■■□□ 17.8
CPNE1-223	ENST00000475146	VPS13A	Q96RL7	3174 aa		24.96	■■□□□ 1.59
CPNE1-223	ENST00000475146	MYO18A	Q92614	2054 aa	Known RBP	24.95	■■□□□ 1.59
CPNE1-223	ENST00000475146	TCRBV21S2A2	A0A5A6	115 aa		24.95	■■□□□ 1.58
CPNE1-223	ENST00000475146	GFRA2	O00451	464 aa		24.95	■■□□□ 1.58
CPNE1-223	ENST00000475146	DAB1	O75553	588 aa		24.95	■■□□□ 1.58
CPNE1-223	ENST00000475146	SGSH	P51688	502 aa		24.95	■■□□□ 1.58
CPNE1-223	ENST00000475146	ZC3H12A	Q5D1E8	599 aa	Known RBP	24.95	■■□□□ 1.58
CPNE1-223	ENST00000475146	NADSYN1	Q6IA69	706 aa		24.95	■■□□□ 1.58
CPNE1-223	ENST00000475146	SLC26A9	Q7LBE3	791 aa		24.95	■■□□□ 1.58
CPNE1-223	ENST00000475146	RASSF3	Q86WH2	238 aa		24.95	■■□□□ 1.58
CPNE1-223	ENST00000475146	ERICH1	Q86X53	443 aa		24.95	■■□□□ 1.58
CPNE1-223	ENST00000475146	ZDHHC17	Q8IUH5	632 aa		24.95	■■□□□ 1.58
CPNE1-223	ENST00000475146	MSANTD4	Q8NCY6	345 aa		24.95	■■□□□ 1.58
CPNE1-223	ENST00000475146	UCMA	Q8WVF2	138 aa		24.95	■■□□□ 1.58
CPNE1-223	ENST00000475146	HMGB4	Q8WW32	186 aa		24.95	■■□□□ 1.58
CPNE1-223	ENST00000475146	DDIT4	Q9NX09	232 aa		24.95	■■□□□ 1.58
CPNE1-223	ENST00000475146	NOCT	Q9UK39	431 aa	Known RBP	24.95	■■□□□ 1.58
CPNE1-223	ENST00000475146	MYO15A	Q9UKN7	3530 aa		24.94	■■□□□ 1.58
CPNE1-223	ENST00000475146	OTOGL	Q3ZCN5	2332 aa		24.94	■■□□□ 1.58
CPNE1-223	ENST00000475146	TYW5	A2RUC4	315 aa	Known RBP	24.94	■■□□□ 1.58
CPNE1-223	ENST00000475146	TBL1X	O60907	577 aa		24.94	■■□□□ 1.58
CPNE1-223	ENST00000475146	IGLV3-25	P01717	112 aa		24.94	■■□□□ 1.58
CPNE1-223	ENST00000475146	PIK3R6	Q5UE93	754 aa		24.94	■■□□□ 1.58
CPNE1-223	ENST00000475146	NAA35	Q5VZE5	725 aa		24.94	■■□□□ 1.58
CPNE1-223	ENST00000475146	CACNA2D4	Q7Z3S7	1137 aa		24.94	■■□□□ 1.58
CPNE1-223	ENST00000475146	ZNF677	Q86XU0	584 aa		24.94	■■□□□ 1.58
CPNE1-223	ENST00000475146	PGBD3	Q8N328	593 aa		24.94	■■□□□ 1.58
CPNE1-223	ENST00000475146	FAM160A2	Q8N612	972 aa	Predicted RBP	24.94	■■□□□ 1.58
CPNE1-223	ENST00000475146	C18orf8	Q96DM3	657 aa		24.94	■■□□□ 1.58
CPNE1-223	ENST00000475146	CIPC	Q9C0C6	399 aa		24.94	■■□□□ 1.58
CPNE1-223	ENST00000475146	NUCKS1	Q9H1E3	243 aa	Known RBP	24.94	■■□□□ 1.58
CPNE1-223	ENST00000475146	CACNA2D2	Q9NY47	1150 aa		24.94	■■□□□ 1.58
CPNE1-223	ENST00000475146	STIM2	Q9P246	746 aa		24.94	■■□□□ 1.58
CPNE1-223	ENST00000475146	GBP1	P32455	592 aa		24.93	■■□□□ 1.58
CPNE1-223	ENST00000475146	NOMO3	P69849	1222 aa		24.93	■■□□□ 1.58
CPNE1-223	ENST00000475146	CDR2	Q01850	454 aa		24.93	■■□□□ 1.58

Retrieved 100 of 20,778 RNA–protein pairs in 71.3 ms