RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 CKAP5Q14008 2032 aa20.2■□□□□ 0.83
USP40-207ENST00000450940 THAP12O43422 761 aa20.2■□□□□ 0.82
USP40-207ENST00000450940 TIMM44O43615 452 aa20.2■□□□□ 0.82
USP40-207ENST00000450940 CAVIN2O95810 425 aa20.2■□□□□ 0.82
USP40-207ENST00000450940 PRKCSHP14314 528 aaPredicted RBP20.2■□□□□ 0.82
USP40-207ENST00000450940 CREB5Q02930 508 aa20.2■□□□□ 0.82
USP40-207ENST00000450940 EIF4HQ15056 248 aaKnown RBP20.2■□□□□ 0.82
USP40-207ENST00000450940 E2F5Q15329 346 aa20.2■□□□□ 0.82
USP40-207ENST00000450940 ARHGAP44Q17R89 818 aa20.2■□□□□ 0.82
USP40-207ENST00000450940 MIIPQ5JXC2 388 aa20.2■□□□□ 0.82
USP40-207ENST00000450940 MPP7Q5T2T1 576 aa20.2■□□□□ 0.82
USP40-207ENST00000450940 ANKS1BQ7Z6G8 1248 aa20.2■□□□□ 0.82
USP40-207ENST00000450940 KIAA0907Q7Z7F0 614 aaPredicted RBP20.2■□□□□ 0.82
USP40-207ENST00000450940 PGBD3Q8N328 593 aa20.2■□□□□ 0.82
USP40-207ENST00000450940 FRMD1Q8N878 549 aa20.2■□□□□ 0.82
USP40-207ENST00000450940 C12orf50Q8NA57 414 aaPredicted RBP20.2■□□□□ 0.82
USP40-207ENST00000450940 TMA16Q96EY4 203 aaKnown RBP20.2■□□□□ 0.82
USP40-207ENST00000450940 NDST4Q9H3R1 872 aa20.2■□□□□ 0.82
USP40-207ENST00000450940 ST7Q9NRC1 585 aa20.2■□□□□ 0.82
USP40-207ENST00000450940 ELOVL2Q9NXB9 296 aa20.2■□□□□ 0.82
USP40-207ENST00000450940 CACNA2D2Q9NY47 1150 aa20.2■□□□□ 0.82
USP40-207ENST00000450940 STON1Q9Y6Q2 735 aa20.2■□□□□ 0.82
USP40-207ENST00000450940 WASH3PC4AMC7 463 aa20.19■□□□□ 0.82
USP40-207ENST00000450940 PAPSS1O43252 624 aaPredicted RBP20.19■□□□□ 0.82
USP40-207ENST00000450940 NCAM1P13591 858 aa20.19■□□□□ 0.82
USP40-207ENST00000450940 NDUFV2P19404 249 aa20.19■□□□□ 0.82
USP40-207ENST00000450940 TBX4P57082 545 aa20.19■□□□□ 0.82
USP40-207ENST00000450940 AASDHQ4L235 1098 aaPredicted RBP20.19■□□□□ 0.82
USP40-207ENST00000450940 VWA3BQ502W6 1294 aa20.19■□□□□ 0.82
USP40-207ENST00000450940 TMEM215Q68D42 235 aa20.19■□□□□ 0.82
USP40-207ENST00000450940 LPCAT2Q7L5N7 544 aa20.19■□□□□ 0.82
USP40-207ENST00000450940 WDTC1Q8N5D0 677 aa20.19■□□□□ 0.82
USP40-207ENST00000450940 DQX1Q8TE96 717 aaKnown RBP20.19■□□□□ 0.82
USP40-207ENST00000450940 UCMAQ8WVF2 138 aa20.19■□□□□ 0.82
USP40-207ENST00000450940 SLC39A13Q96H72 371 aa20.19■□□□□ 0.82
USP40-207ENST00000450940 FCRL2Q96LA5 508 aaPredicted RBP20.19■□□□□ 0.82
USP40-207ENST00000450940 TUBGCP2Q9BSJ2 902 aa20.19■□□□□ 0.82
USP40-207ENST00000450940 TRIM62Q9BVG3 475 aa20.19■□□□□ 0.82
USP40-207ENST00000450940 SMOC1Q9H4F8 434 aa20.19■□□□□ 0.82
USP40-207ENST00000450940 RXFP3Q9NSD7 469 aa20.19■□□□□ 0.82
USP40-207ENST00000450940 CALCOCO1Q9P1Z2 691 aa20.19■□□□□ 0.82
USP40-207ENST00000450940 AJAP1Q9UKB5 411 aaPredicted RBP20.19■□□□□ 0.82
USP40-207ENST00000450940 PCDHGC3Q9UN70 934 aa20.19■□□□□ 0.82
USP40-207ENST00000450940 TLR6Q9Y2C9 796 aa20.19■□□□□ 0.82
USP40-207ENST00000450940 MED19A0JLT2 244 aaPredicted RBP20.18■□□□□ 0.82
USP40-207ENST00000450940 E5RJQ4 531 aa20.18■□□□□ 0.82
USP40-207ENST00000450940 TM4SF5O14894 197 aa20.18■□□□□ 0.82
USP40-207ENST00000450940 ZBTB24O43167 697 aaPredicted RBP20.18■□□□□ 0.82
USP40-207ENST00000450940 IRAK2O43187 625 aa20.18■□□□□ 0.82
USP40-207ENST00000450940 ACSL4O60488 711 aa20.18■□□□□ 0.82
USP40-207ENST00000450940 TSPAN3O60637 253 aa20.18■□□□□ 0.82
USP40-207ENST00000450940 SLC11A2P49281 568 aa20.18■□□□□ 0.82
USP40-207ENST00000450940 PDCLQ13371 301 aa20.18■□□□□ 0.82
USP40-207ENST00000450940 FAM133BQ5BKY9 247 aaKnown RBP20.18■□□□□ 0.82
USP40-207ENST00000450940 PIK3R6Q5UE93 754 aa20.18■□□□□ 0.82
USP40-207ENST00000450940 METTL3Q86U44 580 aaKnown RBP20.18■□□□□ 0.82
USP40-207ENST00000450940 DDX51Q8N8A6 666 aaKnown RBP eCLIP20.18■□□□□ 0.82
USP40-207ENST00000450940 MRGPRX1Q96LB2 322 aa20.18■□□□□ 0.82
USP40-207ENST00000450940 SERPINB11Q96P15 392 aa20.18■□□□□ 0.82
USP40-207ENST00000450940 LHX5Q9H2C1 402 aa20.18■□□□□ 0.82
USP40-207ENST00000450940 DNAJC12Q9UKB3 198 aa20.18■□□□□ 0.82
USP40-207ENST00000450940 NAALADL1Q9UQQ1 740 aa20.18■□□□□ 0.82
USP40-207ENST00000450940 PI4KAP42356 2102 aa20.18■□□□□ 0.82
USP40-207ENST00000450940 GON4LQ3T8J9 2241 aa20.18■□□□□ 0.82
USP40-207ENST00000450940 DCDC2BA2VCK2 349 aa20.17■□□□□ 0.82
USP40-207ENST00000450940 FOXN3O00409 490 aaPredicted RBP20.17■□□□□ 0.82
USP40-207ENST00000450940 MAP3K13O43283 966 aa20.17■□□□□ 0.82
USP40-207ENST00000450940 ZNF217O75362 1048 aa20.17■□□□□ 0.82
USP40-207ENST00000450940 HLA-FP30511 346 aa20.17■□□□□ 0.82
USP40-207ENST00000450940 USP8P40818 1118 aa20.17■□□□□ 0.82
USP40-207ENST00000450940 IL12RB1P42701 662 aa20.17■□□□□ 0.82
USP40-207ENST00000450940 YWHAZP63104 245 aaKnown RBP20.17■□□□□ 0.82
USP40-207ENST00000450940 PTK2Q05397 1052 aa20.17■□□□□ 0.82
USP40-207ENST00000450940 EIF4EBP2Q13542 120 aaPredicted RBP20.17■□□□□ 0.82
USP40-207ENST00000450940 SYPL2Q5VXT5 272 aa20.17■□□□□ 0.82
USP40-207ENST00000450940 SLC36A4Q6YBV0 504 aa20.17■□□□□ 0.82
USP40-207ENST00000450940 RBM43Q6ZSC3 357 aaKnown RBP20.17■□□□□ 0.82
USP40-207ENST00000450940 CYP2U1Q7Z449 544 aa20.17■□□□□ 0.82
USP40-207ENST00000450940 FAM149B1Q96BN6 582 aa20.17■□□□□ 0.82
USP40-207ENST00000450940 POPDC2Q9HBU9 364 aa20.17■□□□□ 0.82
USP40-207ENST00000450940 RAD54BQ9Y620 910 aa20.17■□□□□ 0.82
USP40-207ENST00000450940 MUC22E2RYF6 1773 aaPredicted RBP20.16■□□□□ 0.82
USP40-207ENST00000450940 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa20.16■□□□□ 0.82
USP40-207ENST00000450940 IGLV3-25P01717 112 aa20.16■□□□□ 0.82
USP40-207ENST00000450940 SLC6A4P31645 630 aa20.16■□□□□ 0.82
USP40-207ENST00000450940 CLCN1P35523 988 aa20.16■□□□□ 0.82
USP40-207ENST00000450940 DHPSP49366 369 aaPredicted RBP20.16■□□□□ 0.82
USP40-207ENST00000450940 SGSHP51688 502 aa20.16■□□□□ 0.82
USP40-207ENST00000450940 KCNMA1Q12791 1236 aa20.16■□□□□ 0.82
USP40-207ENST00000450940 ZNF234Q14588 700 aa20.16■□□□□ 0.82
USP40-207ENST00000450940 STPG1Q5TH74 334 aa20.16■□□□□ 0.82
USP40-207ENST00000450940 NADSYN1Q6IA69 706 aa20.16■□□□□ 0.82
USP40-207ENST00000450940 TCEAL6Q6IPX3 200 aa20.16■□□□□ 0.82
USP40-207ENST00000450940 TMEFF1Q8IYR6 380 aa20.16■□□□□ 0.82
USP40-207ENST00000450940 FAM71AQ8IYT1 594 aa20.16■□□□□ 0.82
USP40-207ENST00000450940 WFIKKN2Q8TEU8 576 aa20.16■□□□□ 0.82
USP40-207ENST00000450940 TCEAL3Q969E4 200 aa20.16■□□□□ 0.82
USP40-207ENST00000450940 SAMSN1Q9NSI8 373 aaKnown RBP20.16■□□□□ 0.82
USP40-207ENST00000450940 SPTBN2O15020 2390 aa20.15■□□□□ 0.82
USP40-207ENST00000450940 NCOR2Q9Y618 2525 aa20.15■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms