RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 ARL4AP40617 200 aa19.28■□□□□ 0.68
CLN3-206ENST00000360019 OTUD4Q01804 1114 aaKnown RBP19.28■□□□□ 0.68
CLN3-206ENST00000360019 NNTQ13423 1086 aa19.28■□□□□ 0.68
CLN3-206ENST00000360019 DHX34Q14147 1143 aaKnown RBP19.28■□□□□ 0.68
CLN3-206ENST00000360019 NPNTQ6UXI9 565 aa19.28■□□□□ 0.68
CLN3-206ENST00000360019 ITIH5Q86UX2 942 aa19.28■□□□□ 0.68
CLN3-206ENST00000360019 CCDC105Q8IYK2 499 aa19.28■□□□□ 0.68
CLN3-206ENST00000360019 ANKRD7Q92527 254 aa19.28■□□□□ 0.68
CLN3-206ENST00000360019 IL21Q9HBE4 155 aa19.28■□□□□ 0.68
CLN3-206ENST00000360019 RAB21Q9UL25 225 aa19.28■□□□□ 0.68
CLN3-206ENST00000360019 APOL1O14791 398 aa19.27■□□□□ 0.68
CLN3-206ENST00000360019 LRG1P02750 347 aa19.27■□□□□ 0.68
CLN3-206ENST00000360019 TBX4P57082 545 aa19.27■□□□□ 0.68
CLN3-206ENST00000360019 TRIP4Q15650 581 aaPredicted RBP19.27■□□□□ 0.68
CLN3-206ENST00000360019 WDR93Q6P2C0 686 aa19.27■□□□□ 0.68
CLN3-206ENST00000360019 DRICH1Q6PGQ1 229 aaPredicted RBP19.27■□□□□ 0.68
CLN3-206ENST00000360019 JAMLQ86YT9 394 aa19.27■□□□□ 0.68
CLN3-206ENST00000360019 SLC35B2Q8TB61 432 aa19.27■□□□□ 0.68
CLN3-206ENST00000360019 RUNDC3BQ96NL0 473 aa19.27■□□□□ 0.68
CLN3-206ENST00000360019 TRIM51Q9BSJ1 452 aa19.27■□□□□ 0.68
CLN3-206ENST00000360019 ARHGEF4Q9NR80 690 aa19.27■□□□□ 0.68
CLN3-206ENST00000360019 UXTQ9UBK9 157 aaPredicted RBP19.27■□□□□ 0.68
CLN3-206ENST00000360019 XPO7Q9UIA9 1087 aaKnown RBP19.27■□□□□ 0.68
CLN3-206ENST00000360019 ASB3Q9Y575 518 aa19.27■□□□□ 0.68
CLN3-206ENST00000360019 BHMG1C9JSJ3 638 aaPredicted RBP19.26■□□□□ 0.67
CLN3-206ENST00000360019 H3BRJ5 948 aa19.26■□□□□ 0.67
CLN3-206ENST00000360019 EEF2KO00418 725 aaKnown RBP19.26■□□□□ 0.67
CLN3-206ENST00000360019 PAGE1O75459 146 aa19.26■□□□□ 0.67
CLN3-206ENST00000360019 AMPD1P23109 780 aa19.26■□□□□ 0.67
CLN3-206ENST00000360019 GUCY2DQ02846 1103 aa19.26■□□□□ 0.67
CLN3-206ENST00000360019 BYSLQ13895 437 aaKnown RBP19.26■□□□□ 0.67
CLN3-206ENST00000360019 DPYSQ14117 519 aa19.26■□□□□ 0.67
CLN3-206ENST00000360019 OASLQ15646 514 aaKnown RBP19.26■□□□□ 0.67
CLN3-206ENST00000360019 HECTD3Q5T447 861 aa19.26■□□□□ 0.67
CLN3-206ENST00000360019 PPP2R2DQ66LE6 453 aa19.26■□□□□ 0.67
CLN3-206ENST00000360019 TTC13Q8NBP0 860 aa19.26■□□□□ 0.67
CLN3-206ENST00000360019 SLC22A17Q8WUG5 538 aa19.26■□□□□ 0.67
CLN3-206ENST00000360019 SLCO2A1Q92959 643 aa19.26■□□□□ 0.67
CLN3-206ENST00000360019 HAPLN3Q96S86 360 aa19.26■□□□□ 0.67
CLN3-206ENST00000360019 CDK5RAP1Q96SZ6 601 aaKnown RBP19.26■□□□□ 0.67
CLN3-206ENST00000360019 OSBPL2Q9H1P3 480 aa19.26■□□□□ 0.67
CLN3-206ENST00000360019 ETNK2Q9NVF9 386 aa19.26■□□□□ 0.67
CLN3-206ENST00000360019 OR12D3Q9UGF7 316 aa19.26■□□□□ 0.67
CLN3-206ENST00000360019 MFHAS1Q9Y4C4 1052 aa19.26■□□□□ 0.67
CLN3-206ENST00000360019 SLC12A8A0AV02 714 aa19.25■□□□□ 0.67
CLN3-206ENST00000360019 ESYT3A0FGR9 886 aa19.25■□□□□ 0.67
CLN3-206ENST00000360019 COCHO43405 550 aa19.25■□□□□ 0.67
CLN3-206ENST00000360019 CLASP2O75122 1294 aaKnown RBP19.25■□□□□ 0.67
CLN3-206ENST00000360019 MOCS2O96007 188 aaPredicted RBP19.25■□□□□ 0.67
CLN3-206ENST00000360019 IGLV3-27P01718 113 aa19.25■□□□□ 0.67
CLN3-206ENST00000360019 F11P03951 625 aa19.25■□□□□ 0.67
CLN3-206ENST00000360019 EPCAMP16422 314 aa19.25■□□□□ 0.67
CLN3-206ENST00000360019 TGM2P21980 687 aa19.25■□□□□ 0.67
CLN3-206ENST00000360019 ATP5C1P36542 298 aaKnown RBP19.25■□□□□ 0.67
CLN3-206ENST00000360019 TUBP50607 506 aa19.25■□□□□ 0.67
CLN3-206ENST00000360019 RAB30Q15771 203 aa19.25■□□□□ 0.67
CLN3-206ENST00000360019 NCBP2-AS2Q69YL0 99 aa19.25■□□□□ 0.67
CLN3-206ENST00000360019 KLHDC10Q6PID8 442 aa19.25■□□□□ 0.67
CLN3-206ENST00000360019 C1orf228Q6PIY5 440 aa19.25■□□□□ 0.67
CLN3-206ENST00000360019 RFX8Q6ZV50 586 aa19.25■□□□□ 0.67
CLN3-206ENST00000360019 TMC8Q8IU68 726 aa19.25■□□□□ 0.67
CLN3-206ENST00000360019 ARNTL2Q8WYA1 636 aa19.25■□□□□ 0.67
CLN3-206ENST00000360019 NKD2Q969F2 451 aaPredicted RBP19.25■□□□□ 0.67
CLN3-206ENST00000360019 LRRC3Q9BY71 257 aa19.25■□□□□ 0.67
CLN3-206ENST00000360019 EPB41L5Q9HCM4 733 aa19.25■□□□□ 0.67
CLN3-206ENST00000360019 GDF3Q9NR23 364 aa19.25■□□□□ 0.67
CLN3-206ENST00000360019 TMEM51Q9NW97 253 aa19.25■□□□□ 0.67
CLN3-206ENST00000360019 MSRAQ9UJ68 235 aa19.25■□□□□ 0.67
CLN3-206ENST00000360019 DNMT3LQ9UJW3 386 aa19.25■□□□□ 0.67
CLN3-206ENST00000360019 MTCL1Q9Y4B5 1905 aaKnown RBP19.25■□□□□ 0.67
CLN3-206ENST00000360019 REV3LO60673 3130 aa19.25■□□□□ 0.67
CLN3-206ENST00000360019 C2orf78A6NCI8 922 aa19.25■□□□□ 0.67
CLN3-206ENST00000360019 FAM187AA6NFU0 413 aa19.25■□□□□ 0.67
CLN3-206ENST00000360019 LRIG2O94898 1065 aa19.25■□□□□ 0.67
CLN3-206ENST00000360019 OAS1P00973 400 aaKnown RBP19.25■□□□□ 0.67
CLN3-206ENST00000360019 H2AFXP16104 143 aaPredicted RBP19.25■□□□□ 0.67
CLN3-206ENST00000360019 PPP3CCP48454 512 aa19.25■□□□□ 0.67
CLN3-206ENST00000360019 VCPP55072 806 aaKnown RBP19.25■□□□□ 0.67
CLN3-206ENST00000360019 NOMO1Q15155 1222 aa19.25■□□□□ 0.67
CLN3-206ENST00000360019 TRADDQ15628 312 aa19.25■□□□□ 0.67
CLN3-206ENST00000360019 ARTNQ5T4W7 220 aa19.25■□□□□ 0.67
CLN3-206ENST00000360019 PDE12Q6L8Q7 609 aaKnown RBP19.25■□□□□ 0.67
CLN3-206ENST00000360019 TADA2BQ86TJ2 420 aa19.25■□□□□ 0.67
CLN3-206ENST00000360019 ATL2Q8NHH9 583 aa19.25■□□□□ 0.67
CLN3-206ENST00000360019 P3H4Q92791 437 aa19.25■□□□□ 0.67
CLN3-206ENST00000360019 FRMD8P1Q9BZ68 369 aaPredicted RBP19.25■□□□□ 0.67
CLN3-206ENST00000360019 MAN1C1Q9NR34 630 aa19.25■□□□□ 0.67
CLN3-206ENST00000360019 NEU3Q9UQ49 428 aa19.25■□□□□ 0.67
CLN3-206ENST00000360019 ANAPC1Q9H1A4 1944 aa19.24■□□□□ 0.67
CLN3-206ENST00000360019 PER2O15055 1255 aa19.24■□□□□ 0.67
CLN3-206ENST00000360019 CCL16O15467 120 aa19.24■□□□□ 0.67
CLN3-206ENST00000360019 RFPL2O75678 378 aa19.24■□□□□ 0.67
CLN3-206ENST00000360019 ECEL1O95672 775 aa19.24■□□□□ 0.67
CLN3-206ENST00000360019 HMBSP08397 361 aa19.24■□□□□ 0.67
CLN3-206ENST00000360019 SLC2A3P11169 496 aa19.24■□□□□ 0.67
CLN3-206ENST00000360019 TPI1P60174 286 aa19.24■□□□□ 0.67
CLN3-206ENST00000360019 GBE1Q04446 702 aa19.24■□□□□ 0.67
CLN3-206ENST00000360019 PPM1LQ5SGD2 360 aa19.24■□□□□ 0.67
CLN3-206ENST00000360019 FBXO38Q6PIJ6 1188 aa19.24■□□□□ 0.67
CLN3-206ENST00000360019 HS6ST3Q8IZP7 471 aa19.24■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms