RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-213ENST00000542641 F9P00740 461 aa12.07□□□□□ -0.48
YBX3-213ENST00000542641 IGLV3-25P01717 112 aa12.07□□□□□ -0.48
YBX3-213ENST00000542641 IRF1P10914 325 aa12.07□□□□□ -0.48
YBX3-213ENST00000542641 NAP1L1P55209 391 aaKnown RBP12.07□□□□□ -0.48
YBX3-213ENST00000542641 ZXDBP98169 803 aa12.07□□□□□ -0.48
YBX3-213ENST00000542641 NNTQ13423 1086 aa12.07□□□□□ -0.48
YBX3-213ENST00000542641 PIGHQ14442 188 aaPredicted RBP12.07□□□□□ -0.48
YBX3-213ENST00000542641 TCEAL1Q15170 157 aa12.07□□□□□ -0.48
YBX3-213ENST00000542641 SH3PXD2AQ5TCZ1 1133 aa12.07□□□□□ -0.48
YBX3-213ENST00000542641 TANGO2Q6ICL3 276 aa12.07□□□□□ -0.48
YBX3-213ENST00000542641 PARM1Q6UWI2 310 aa12.07□□□□□ -0.48
YBX3-213ENST00000542641 SND1Q7KZF4 910 aaKnown RBP eCLIP12.07□□□□□ -0.48
YBX3-213ENST00000542641 DDX42Q86XP3 938 aaKnown RBP eCLIP12.07□□□□□ -0.48
YBX3-213ENST00000542641 FNIP1Q8TF40 1166 aa12.07□□□□□ -0.48
YBX3-213ENST00000542641 FAM172AQ8WUF8 416 aa12.07□□□□□ -0.48
YBX3-213ENST00000542641 E2F7Q96AV8 911 aa12.07□□□□□ -0.48
YBX3-213ENST00000542641 PLD4Q96BZ4 506 aa12.07□□□□□ -0.48
YBX3-213ENST00000542641 PGAP3Q96FM1 320 aaPredicted RBP12.07□□□□□ -0.48
YBX3-213ENST00000542641 BTBD6Q96KE9 485 aa12.07□□□□□ -0.48
YBX3-213ENST00000542641 ZFRQ96KR1 1074 aaKnown RBP12.07□□□□□ -0.48
YBX3-213ENST00000542641 ASB2Q96Q27 587 aa12.07□□□□□ -0.48
YBX3-213ENST00000542641 ADAM33Q9BZ11 813 aa12.07□□□□□ -0.48
YBX3-213ENST00000542641 TSGA10Q9BZW7 698 aa12.07□□□□□ -0.48
YBX3-213ENST00000542641 TMEM51Q9NW97 253 aa12.07□□□□□ -0.48
YBX3-213ENST00000542641 CALCOCO1Q9P1Z2 691 aa12.07□□□□□ -0.48
YBX3-213ENST00000542641 CFAP97Q9P2B7 532 aa12.07□□□□□ -0.48
YBX3-213ENST00000542641 IP6K2Q9UHH9 426 aa12.07□□□□□ -0.48
YBX3-213ENST00000542641 LCMT1Q9UIC8 334 aa12.07□□□□□ -0.48
YBX3-213ENST00000542641 PPP2R2CQ9Y2T4 447 aa12.07□□□□□ -0.48
YBX3-213ENST00000542641 SH3BP1Q9Y3L3 701 aa12.07□□□□□ -0.48
YBX3-213ENST00000542641 A0A0U1RQJ8 604 aa12.06□□□□□ -0.48
YBX3-213ENST00000542641 TMEM110-MUSTN1A8MSY1 372 aa12.06□□□□□ -0.48
YBX3-213ENST00000542641 HEPACAM2A8MVW5 462 aa12.06□□□□□ -0.48
YBX3-213ENST00000542641 BTNL10A8MVZ5 291 aa12.06□□□□□ -0.48
YBX3-213ENST00000542641 BUB1O43683 1085 aa12.06□□□□□ -0.48
YBX3-213ENST00000542641 KRT86O43790 486 aa12.06□□□□□ -0.48
YBX3-213ENST00000542641 STC2O76061 302 aa12.06□□□□□ -0.48
YBX3-213ENST00000542641 RNF8O76064 485 aa12.06□□□□□ -0.48
YBX3-213ENST00000542641 ENDOD1O94919 500 aa12.06□□□□□ -0.48
YBX3-213ENST00000542641 SLC2A3P11169 496 aa12.06□□□□□ -0.48
YBX3-213ENST00000542641 FCARP24071 287 aa12.06□□□□□ -0.48
YBX3-213ENST00000542641 CCR1P32246 355 aa12.06□□□□□ -0.48
YBX3-213ENST00000542641 RDXP35241 583 aaKnown RBP12.06□□□□□ -0.48
YBX3-213ENST00000542641 ARHGAP25P42331 645 aa12.06□□□□□ -0.48
YBX3-213ENST00000542641 HARS2P49590 506 aaKnown RBP12.06□□□□□ -0.48
YBX3-213ENST00000542641 RING1Q06587 406 aa12.06□□□□□ -0.48
YBX3-213ENST00000542641 ZNF252P-AS1Q0IIN9 211 aa12.06□□□□□ -0.48
YBX3-213ENST00000542641 EIF4EBP2Q13542 120 aaPredicted RBP12.06□□□□□ -0.48
YBX3-213ENST00000542641 MESDQ14696 234 aa12.06□□□□□ -0.48
YBX3-213ENST00000542641 ACAP1Q15027 740 aa12.06□□□□□ -0.48
YBX3-213ENST00000542641 ZC3H12AQ5D1E8 599 aaKnown RBP12.06□□□□□ -0.48
YBX3-213ENST00000542641 OTUD1Q5VV17 481 aaPredicted RBP12.06□□□□□ -0.48
YBX3-213ENST00000542641 STRADAQ7RTN6 431 aa12.06□□□□□ -0.48
YBX3-213ENST00000542641 ADHFE1Q8IWW8 467 aa12.06□□□□□ -0.48
YBX3-213ENST00000542641 UNC45BQ8IWX7 931 aa12.06□□□□□ -0.48
YBX3-213ENST00000542641 ZDHHC14Q8IZN3 488 aa12.06□□□□□ -0.48
YBX3-213ENST00000542641 ADAMTS19Q8TE59 1207 aa12.06□□□□□ -0.48
YBX3-213ENST00000542641 ATRIPQ8WXE1 791 aa12.06□□□□□ -0.48
YBX3-213ENST00000542641 CENPIQ92674 756 aaPredicted RBP12.06□□□□□ -0.48
YBX3-213ENST00000542641 FGF14Q92915 247 aa12.06□□□□□ -0.48
YBX3-213ENST00000542641 ELSPBP1Q96BH3 223 aa12.06□□□□□ -0.48
YBX3-213ENST00000542641 RSPRY1Q96DX4 576 aa12.06□□□□□ -0.48
YBX3-213ENST00000542641 SLC39A13Q96H72 371 aa12.06□□□□□ -0.48
YBX3-213ENST00000542641 KXD1Q9BQD3 176 aa12.06□□□□□ -0.48
YBX3-213ENST00000542641 WDCPQ9H6R7 721 aa12.06□□□□□ -0.48
YBX3-213ENST00000542641 PIGVQ9NUD9 493 aa12.06□□□□□ -0.48
YBX3-213ENST00000542641 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.06□□□□□ -0.48
YBX3-213ENST00000542641 PRKAG3Q9UGI9 489 aa12.06□□□□□ -0.48
YBX3-213ENST00000542641 LIMD1Q9UGP4 676 aa12.06□□□□□ -0.48
YBX3-213ENST00000542641 PAXBP1Q9Y5B6 917 aa12.06□□□□□ -0.48
YBX3-213ENST00000542641 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.06□□□□□ -0.48
YBX3-213ENST00000542641 NUMBLQ9Y6R0 609 aa12.06□□□□□ -0.48
YBX3-213ENST00000542641 E2F8A0AVK6 867 aa12.05□□□□□ -0.48
YBX3-213ENST00000542641 MACROD2A1Z1Q3 448 aa12.05□□□□□ -0.48
YBX3-213ENST00000542641 LOC730098B7Z3J9 87 aa12.05□□□□□ -0.48
YBX3-213ENST00000542641 ANHXE9PGG2 379 aa12.05□□□□□ -0.48
YBX3-213ENST00000542641 ZSCAN12O43309 604 aa12.05□□□□□ -0.48
YBX3-213ENST00000542641 ECI2O75521 394 aa12.05□□□□□ -0.48
YBX3-213ENST00000542641 PROSCO94903 275 aa12.05□□□□□ -0.48
YBX3-213ENST00000542641 IGLV3-27P01718 113 aa12.05□□□□□ -0.48
YBX3-213ENST00000542641 APOEP02649 317 aa12.05□□□□□ -0.48
YBX3-213ENST00000542641 TCF3P15923 654 aa12.05□□□□□ -0.48
YBX3-213ENST00000542641 CXCR3P49682 368 aa12.05□□□□□ -0.48
YBX3-213ENST00000542641 ATXN1P54253 815 aaKnown RBP12.05□□□□□ -0.48
YBX3-213ENST00000542641 HADHBP55084 474 aaKnown RBP12.05□□□□□ -0.48
YBX3-213ENST00000542641 HDAC4P56524 1084 aa12.05□□□□□ -0.48
YBX3-213ENST00000542641 HTR4Q13639 388 aa12.05□□□□□ -0.48
YBX3-213ENST00000542641 PPP2R5DQ14738 602 aa12.05□□□□□ -0.48
YBX3-213ENST00000542641 ZNF77Q15935 545 aa12.05□□□□□ -0.48
YBX3-213ENST00000542641 IFI16Q16666 785 aaKnown RBP12.05□□□□□ -0.48
YBX3-213ENST00000542641 ARHGAP29Q52LW3 1261 aa12.05□□□□□ -0.48
YBX3-213ENST00000542641 RAB6CQ53S08 254 aa12.05□□□□□ -0.48
YBX3-213ENST00000542641 NUGGCQ68CJ6 796 aa12.05□□□□□ -0.48
YBX3-213ENST00000542641 CC2D1AQ6P1N0 951 aaPredicted RBP12.05□□□□□ -0.48
YBX3-213ENST00000542641 SCYL2Q6P3W7 929 aa12.05□□□□□ -0.48
YBX3-213ENST00000542641 HTR3DQ70Z44 454 aa12.05□□□□□ -0.48
YBX3-213ENST00000542641 BNIPLQ7Z465 357 aa12.05□□□□□ -0.48
YBX3-213ENST00000542641 FAM131BQ86XD5 332 aa12.05□□□□□ -0.48
YBX3-213ENST00000542641 DENND1CQ8IV53 801 aa12.05□□□□□ -0.48
YBX3-213ENST00000542641 MFSD6LQ8IWD5 586 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 356.3 ms