RNA–Protein interactions for RNA: ENST00000505659.1

HMGB1P29-201, Transcript of high mobility group box 1 pseudogene 29, humanhuman

BASIC

Gene HMGB1P29, Length 499 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P29-201ENST00000505659 PI4KBQ9UBF8 816 aa3.98□□□□□ -1.77
HMGB1P29-201ENST00000505659 HEMK1Q9Y5R4 338 aaPredicted RBP3.98□□□□□ -1.77
HMGB1P29-201ENST00000505659 CACNA1IQ9P0X4 2223 aa3.98□□□□□ -1.77
HMGB1P29-201ENST00000505659 KIF3BO15066 747 aa3.97□□□□□ -1.77
HMGB1P29-201ENST00000505659 NTN1O95631 604 aa3.97□□□□□ -1.77
HMGB1P29-201ENST00000505659 EGR1P18146 543 aa3.97□□□□□ -1.77
HMGB1P29-201ENST00000505659 HOXA7P31268 230 aaPredicted RBP3.97□□□□□ -1.77
HMGB1P29-201ENST00000505659 IGHMBP2P38935 993 aaKnown RBP3.97□□□□□ -1.77
HMGB1P29-201ENST00000505659 ATP1A4Q13733 1029 aa3.97□□□□□ -1.77
HMGB1P29-201ENST00000505659 ELF2Q15723 593 aa3.97□□□□□ -1.77
HMGB1P29-201ENST00000505659 CNGA3Q16281 694 aa3.97□□□□□ -1.77
HMGB1P29-201ENST00000505659 SLC5A9Q2M3M2 681 aa3.97□□□□□ -1.77
HMGB1P29-201ENST00000505659 P3H1Q32P28 736 aa3.97□□□□□ -1.77
HMGB1P29-201ENST00000505659 ARL13BQ3SXY8 428 aa3.97□□□□□ -1.77
HMGB1P29-201ENST00000505659 SLC9C1Q4G0N8 1177 aa3.97□□□□□ -1.77
HMGB1P29-201ENST00000505659 TMEM63BQ5T3F8 832 aa3.97□□□□□ -1.77
HMGB1P29-201ENST00000505659 ANO7Q6IWH7 933 aa3.97□□□□□ -1.77
HMGB1P29-201ENST00000505659 KYAT3Q6YP21 454 aaKnown RBP3.97□□□□□ -1.77
HMGB1P29-201ENST00000505659 ZNF793Q6ZN11 406 aa3.97□□□□□ -1.77
HMGB1P29-201ENST00000505659 ANKRD13BQ86YJ7 626 aa3.97□□□□□ -1.77
HMGB1P29-201ENST00000505659 SUGP2Q8IX01 1082 aaKnown RBP eCLIP3.97□□□□□ -1.77
HMGB1P29-201ENST00000505659 CLASRPQ8N2M8 674 aaKnown RBP3.97□□□□□ -1.77
HMGB1P29-201ENST00000505659 AKAP1Q92667 903 aaKnown RBP eCLIP3.97□□□□□ -1.77
HMGB1P29-201ENST00000505659 C18orf8Q96DM3 657 aa3.97□□□□□ -1.77
HMGB1P29-201ENST00000505659 HMCESQ96FZ2 354 aa3.97□□□□□ -1.77
HMGB1P29-201ENST00000505659 SNX27Q96L92 541 aa3.97□□□□□ -1.77
HMGB1P29-201ENST00000505659 TMEM79Q9BSE2 394 aa3.97□□□□□ -1.77
HMGB1P29-201ENST00000505659 GATA5Q9BWX5 397 aaPredicted RBP3.97□□□□□ -1.77
HMGB1P29-201ENST00000505659 FOXP1Q9H334 677 aaPredicted RBP3.97□□□□□ -1.77
HMGB1P29-201ENST00000505659 MAFFQ9ULX9 164 aa3.97□□□□□ -1.77
HMGB1P29-201ENST00000505659 PCDHGB2Q9Y5G2 931 aa3.97□□□□□ -1.77
HMGB1P29-201ENST00000505659 ZMYM2Q9UBW7 1377 aa3.97□□□□□ -1.77
HMGB1P29-201ENST00000505659 SPATA31A1Q5TZJ5 1347 aa3.96□□□□□ -1.77
HMGB1P29-201ENST00000505659 OR2W5A6NFC9 320 aa3.96□□□□□ -1.78
HMGB1P29-201ENST00000505659 RASA4BC9J798 803 aa3.96□□□□□ -1.78
HMGB1P29-201ENST00000505659 DHHO43323 396 aa3.96□□□□□ -1.78
HMGB1P29-201ENST00000505659 RASA4O43374 803 aa3.96□□□□□ -1.78
HMGB1P29-201ENST00000505659 SRGAP2BP0DMP2 458 aa3.96□□□□□ -1.78
HMGB1P29-201ENST00000505659 CPA2P48052 419 aa3.96□□□□□ -1.78
HMGB1P29-201ENST00000505659 TM4SF4P48230 202 aa3.96□□□□□ -1.78
HMGB1P29-201ENST00000505659 CCT4P50991 539 aaKnown RBP3.96□□□□□ -1.78
HMGB1P29-201ENST00000505659 PLCD1P51178 756 aa3.96□□□□□ -1.78
HMGB1P29-201ENST00000505659 LINC00205P59089 165 aa3.96□□□□□ -1.78
HMGB1P29-201ENST00000505659 RPS13P62277 151 aaKnown RBP3.96□□□□□ -1.78
HMGB1P29-201ENST00000505659 SEMA3BQ13214 749 aa3.96□□□□□ -1.78
HMGB1P29-201ENST00000505659 MTA1Q13330 715 aa3.96□□□□□ -1.78
HMGB1P29-201ENST00000505659 STIM1Q13586 685 aa3.96□□□□□ -1.78
HMGB1P29-201ENST00000505659 FAM110CQ1W6H9 321 aa3.96□□□□□ -1.78
HMGB1P29-201ENST00000505659 IL31Q6EBC2 164 aa3.96□□□□□ -1.78
HMGB1P29-201ENST00000505659 CCDC144NLQ6NUI1 221 aa3.96□□□□□ -1.78
HMGB1P29-201ENST00000505659 USP17L6PQ6QN14 398 aa3.96□□□□□ -1.78
HMGB1P29-201ENST00000505659 C16orf89Q6UX73 402 aa3.96□□□□□ -1.78
HMGB1P29-201ENST00000505659 DEF8Q6ZN54 512 aa3.96□□□□□ -1.78
HMGB1P29-201ENST00000505659 MRPL10Q7Z7H8 261 aaKnown RBP3.96□□□□□ -1.78
HMGB1P29-201ENST00000505659 RFX6Q8HWS3 928 aa3.96□□□□□ -1.78
HMGB1P29-201ENST00000505659 OR2C3Q8N628 320 aa3.96□□□□□ -1.78
HMGB1P29-201ENST00000505659 PIGKQ92643 395 aa3.96□□□□□ -1.78
HMGB1P29-201ENST00000505659 CDCP1Q9H5V8 836 aa3.96□□□□□ -1.78
HMGB1P29-201ENST00000505659 ZSCAN21Q9Y5A6 473 aaPredicted RBP3.96□□□□□ -1.78
HMGB1P29-201ENST00000505659 J3KTA2 159 aa3.95□□□□□ -1.78
HMGB1P29-201ENST00000505659 PODXLO00592 558 aa3.95□□□□□ -1.78
HMGB1P29-201ENST00000505659 CNOT3O75175 753 aaKnown RBP3.95□□□□□ -1.78
HMGB1P29-201ENST00000505659 FGF18O76093 207 aa3.95□□□□□ -1.78
HMGB1P29-201ENST00000505659 PEPDP12955 493 aa3.95□□□□□ -1.78
HMGB1P29-201ENST00000505659 EEF1GP26641 437 aaKnown RBP3.95□□□□□ -1.78
HMGB1P29-201ENST00000505659 DUSP1P28562 367 aa3.95□□□□□ -1.78
HMGB1P29-201ENST00000505659 STAT6P42226 847 aa3.95□□□□□ -1.78
HMGB1P29-201ENST00000505659 GSTM5P46439 218 aa3.95□□□□□ -1.78
HMGB1P29-201ENST00000505659 AGTR2P50052 363 aa3.95□□□□□ -1.78
HMGB1P29-201ENST00000505659 NEK3P51956 506 aa3.95□□□□□ -1.78
HMGB1P29-201ENST00000505659 MTX1Q13505 466 aa3.95□□□□□ -1.78
HMGB1P29-201ENST00000505659 EARS2Q5JPH6 523 aaKnown RBP3.95□□□□□ -1.78
HMGB1P29-201ENST00000505659 RBM44Q6ZP01 1051 aaKnown RBP3.95□□□□□ -1.78
HMGB1P29-201ENST00000505659 IPO4Q8TEX9 1081 aaKnown RBP3.95□□□□□ -1.78
HMGB1P29-201ENST00000505659 CELF1Q92879 486 aaKnown RBP3.95□□□□□ -1.78
HMGB1P29-201ENST00000505659 ZNF566Q969W8 418 aa3.95□□□□□ -1.78
HMGB1P29-201ENST00000505659 KIAA1191Q96A73 305 aa3.95□□□□□ -1.78
HMGB1P29-201ENST00000505659 MCRS1Q96EZ8 462 aa3.95□□□□□ -1.78
HMGB1P29-201ENST00000505659 ELOVL1Q9BW60 279 aa3.95□□□□□ -1.78
HMGB1P29-201ENST00000505659 EPS8L2Q9H6S3 715 aa3.95□□□□□ -1.78
HMGB1P29-201ENST00000505659 PHTF1Q9UMS5 762 aa3.95□□□□□ -1.78
HMGB1P29-201ENST00000505659 ANO9A1A5B4 782 aa3.94□□□□□ -1.78
HMGB1P29-201ENST00000505659 PCDH17O14917 1159 aa3.94□□□□□ -1.78
HMGB1P29-201ENST00000505659 CTIFO43310 598 aaKnown RBP3.94□□□□□ -1.78
HMGB1P29-201ENST00000505659 TAF5LO75529 589 aa3.94□□□□□ -1.78
HMGB1P29-201ENST00000505659 VIPP01282 170 aa3.94□□□□□ -1.78
HMGB1P29-201ENST00000505659 IDEP14735 1019 aa3.94□□□□□ -1.78
HMGB1P29-201ENST00000505659 TNFRSF1BP20333 461 aa3.94□□□□□ -1.78
HMGB1P29-201ENST00000505659 RPS6KB1P23443 525 aa3.94□□□□□ -1.78
HMGB1P29-201ENST00000505659 HOXD12P35452 270 aa3.94□□□□□ -1.78
HMGB1P29-201ENST00000505659 SOX2P48431 317 aa3.94□□□□□ -1.78
HMGB1P29-201ENST00000505659 HSPA7P48741 367 aa3.94□□□□□ -1.78
HMGB1P29-201ENST00000505659 ZNF84P51523 738 aa3.94□□□□□ -1.78
HMGB1P29-201ENST00000505659 HSF1Q00613 529 aa3.94□□□□□ -1.78
HMGB1P29-201ENST00000505659 SRSF1Q07955 248 aaKnown RBP eCLIP3.94□□□□□ -1.78
HMGB1P29-201ENST00000505659 NSUN2Q08J23 767 aaKnown RBP eCLIP3.94□□□□□ -1.78
HMGB1P29-201ENST00000505659 FHL1Q13642 323 aa3.94□□□□□ -1.78
HMGB1P29-201ENST00000505659 LAMB3Q13751 1172 aa3.94□□□□□ -1.78
HMGB1P29-201ENST00000505659 MAPKAPK3Q16644 382 aa3.94□□□□□ -1.78
HMGB1P29-201ENST00000505659 MPEG1Q2M385 716 aa3.94□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms