RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 REEP1Q9H902 201 aa14.28□□□□□ -0.12
CCDC88A-201ENST00000263630 RSL24D1Q9UHA3 163 aaKnown RBP14.28□□□□□ -0.12
CCDC88A-201ENST00000263630 WDR19Q8NEZ3 1342 aa14.28□□□□□ -0.12
CCDC88A-201ENST00000263630 C15orf38-AP3S2A0A0A6YYH1 394 aa14.28□□□□□ -0.12
CCDC88A-201ENST00000263630 CYP2C8P10632 490 aa14.28□□□□□ -0.12
CCDC88A-201ENST00000263630 RAB11FIP2Q7L804 512 aa14.28□□□□□ -0.12
CCDC88A-201ENST00000263630 ARPINQ7Z6K5 226 aa14.28□□□□□ -0.12
CCDC88A-201ENST00000263630 MCOLN3Q8TDD5 553 aa14.28□□□□□ -0.12
CCDC88A-201ENST00000263630 LGR6Q9HBX8 967 aa14.28□□□□□ -0.12
CCDC88A-201ENST00000263630 TTC26A0AVF1 554 aa14.28□□□□□ -0.12
CCDC88A-201ENST00000263630 CYP21A2P08686 494 aa14.28□□□□□ -0.12
CCDC88A-201ENST00000263630 HNRNPH1P31943 449 aaKnown RBP14.28□□□□□ -0.12
CCDC88A-201ENST00000263630 CORO7P57737 925 aa14.28□□□□□ -0.12
CCDC88A-201ENST00000263630 DSG4Q86SJ6 1040 aa14.28□□□□□ -0.12
CCDC88A-201ENST00000263630 RNF149Q8NC42 400 aa14.28□□□□□ -0.12
CCDC88A-201ENST00000263630 TEKT5Q96M29 485 aa14.28□□□□□ -0.12
CCDC88A-201ENST00000263630 RB1P06400 928 aa14.27□□□□□ -0.12
CCDC88A-201ENST00000263630 ELOA2Q8IYF1 753 aaPredicted RBP14.27□□□□□ -0.12
CCDC88A-201ENST00000263630 MYDGFQ969H8 173 aa14.27□□□□□ -0.12
CCDC88A-201ENST00000263630 EXO5Q9H790 373 aa14.27□□□□□ -0.12
CCDC88A-201ENST00000263630 SSU72P8A0A1W2PR75 194 aa14.27□□□□□ -0.12
CCDC88A-201ENST00000263630 TIPRLO75663 272 aa14.27□□□□□ -0.12
CCDC88A-201ENST00000263630 USP17L8P0C7I0 530 aa14.27□□□□□ -0.12
CCDC88A-201ENST00000263630 ATP5F1P24539 256 aaPredicted RBP14.27□□□□□ -0.12
CCDC88A-201ENST00000263630 HERC6Q8IVU3 1022 aa14.27□□□□□ -0.12
CCDC88A-201ENST00000263630 LOC100506127A0A0U1RQW1 187 aa14.27□□□□□ -0.12
CCDC88A-201ENST00000263630 RAD17O75943 681 aa14.27□□□□□ -0.12
CCDC88A-201ENST00000263630 IL13P35225 146 aa14.27□□□□□ -0.12
CCDC88A-201ENST00000263630 B3GNT6Q6ZMB0 384 aa14.27□□□□□ -0.12
CCDC88A-201ENST00000263630 ZNF248Q8NDW4 579 aa14.27□□□□□ -0.12
CCDC88A-201ENST00000263630 TTLL13PA6NNM8 815 aa14.27□□□□□ -0.12
CCDC88A-201ENST00000263630 USP17L10C9JJH3 530 aa14.27□□□□□ -0.12
CCDC88A-201ENST00000263630 EPN2O95208 641 aa14.27□□□□□ -0.12
CCDC88A-201ENST00000263630 GH2P01242 217 aa14.27□□□□□ -0.12
CCDC88A-201ENST00000263630 UGT1A5P35504 534 aa14.27□□□□□ -0.12
CCDC88A-201ENST00000263630 CACNA2D1P54289 1103 aa14.27□□□□□ -0.12
CCDC88A-201ENST00000263630 ZNHIT3Q15649 155 aaPredicted RBP14.27□□□□□ -0.12
CCDC88A-201ENST00000263630 MEIOBQ8N635 442 aa14.27□□□□□ -0.12
CCDC88A-201ENST00000263630 SLC30A5Q8TAD4 765 aa14.27□□□□□ -0.12
CCDC88A-201ENST00000263630 ISCUQ9H1K1 167 aa14.27□□□□□ -0.12
CCDC88A-201ENST00000263630 BSDC1Q9NW68 430 aaPredicted RBP14.27□□□□□ -0.12
CCDC88A-201ENST00000263630 MAST1Q9Y2H9 1570 aa14.27□□□□□ -0.12
CCDC88A-201ENST00000263630 YY1P25490 414 aa14.27□□□□□ -0.13
CCDC88A-201ENST00000263630 RPL9P32969 192 aaKnown RBP14.27□□□□□ -0.13
CCDC88A-201ENST00000263630 HALP42357 657 aa14.27□□□□□ -0.13
CCDC88A-201ENST00000263630 MTAPQ13126 283 aa14.27□□□□□ -0.13
CCDC88A-201ENST00000263630 POLNQ7Z5Q5 900 aa14.27□□□□□ -0.13
CCDC88A-201ENST00000263630 MINDY2Q8NBR6 621 aa14.27□□□□□ -0.13
CCDC88A-201ENST00000263630 STAU2Q9NUL3 570 aaKnown RBP eCLIP14.27□□□□□ -0.13
CCDC88A-201ENST00000263630 SNX6Q9UNH7 406 aa14.27□□□□□ -0.13
CCDC88A-201ENST00000263630 PLOD3O60568 738 aa14.27□□□□□ -0.13
CCDC88A-201ENST00000263630 STRIP1Q5VSL9 837 aa14.27□□□□□ -0.13
CCDC88A-201ENST00000263630 SIX5Q8N196 739 aa14.27□□□□□ -0.13
CCDC88A-201ENST00000263630 NAGPAQ9UK23 515 aa14.27□□□□□ -0.13
CCDC88A-201ENST00000263630 BAIAP2Q9UQB8 552 aa14.27□□□□□ -0.13
CCDC88A-201ENST00000263630 LRCH1Q9Y2L9 728 aa14.27□□□□□ -0.13
CCDC88A-201ENST00000263630 PMPCBO75439 489 aa14.27□□□□□ -0.13
CCDC88A-201ENST00000263630 ZNF432O94892 652 aa14.27□□□□□ -0.13
CCDC88A-201ENST00000263630 NFKB1P19838 968 aa14.27□□□□□ -0.13
CCDC88A-201ENST00000263630 CBWD2Q8IUF1 395 aa14.27□□□□□ -0.13
CCDC88A-201ENST00000263630 C9orf72Q96LT7 481 aa14.27□□□□□ -0.13
CCDC88A-201ENST00000263630 FAM111AQ96PZ2 611 aa14.27□□□□□ -0.13
CCDC88A-201ENST00000263630 TRIM2Q9C040 744 aa14.27□□□□□ -0.13
CCDC88A-201ENST00000263630 RXFP1Q9HBX9 757 aa14.27□□□□□ -0.13
CCDC88A-201ENST00000263630 IRGMA1A4Y4 181 aa14.27□□□□□ -0.13
CCDC88A-201ENST00000263630 GLP2RO95838 553 aa14.27□□□□□ -0.13
CCDC88A-201ENST00000263630 CYP2E1P05181 493 aaPredicted RBP14.27□□□□□ -0.13
CCDC88A-201ENST00000263630 MYBPC3Q14896 1274 aa14.27□□□□□ -0.13
CCDC88A-201ENST00000263630 TFDP3Q5H9I0 405 aa14.27□□□□□ -0.13
CCDC88A-201ENST00000263630 FAM171BQ6P995 826 aa14.27□□□□□ -0.13
CCDC88A-201ENST00000263630 LEMD2Q8NC56 503 aa14.27□□□□□ -0.13
CCDC88A-201ENST00000263630 ASB2Q96Q27 587 aa14.27□□□□□ -0.13
CCDC88A-201ENST00000263630 WHRNQ9P202 907 aa14.27□□□□□ -0.13
CCDC88A-201ENST00000263630 HAO1Q9UJM8 370 aa14.27□□□□□ -0.13
CCDC88A-201ENST00000263630 INPP4BO15327 924 aa14.26□□□□□ -0.13
CCDC88A-201ENST00000263630 GATBO75879 557 aaKnown RBP14.26□□□□□ -0.13
CCDC88A-201ENST00000263630 ITGA4P13612 1032 aa14.26□□□□□ -0.13
CCDC88A-201ENST00000263630 IL6STP40189 918 aaPredicted RBP14.26□□□□□ -0.13
CCDC88A-201ENST00000263630 CCR4P51679 360 aa14.26□□□□□ -0.13
CCDC88A-201ENST00000263630 TTC29Q8NA56 475 aaPredicted RBP14.26□□□□□ -0.13
CCDC88A-201ENST00000263630 REXO5Q96IC2 774 aaKnown RBP14.26□□□□□ -0.13
CCDC88A-201ENST00000263630 ACTR8Q9H981 624 aa14.26□□□□□ -0.13
CCDC88A-201ENST00000263630 SUCOQ9UBS9 1254 aaKnown RBP14.26□□□□□ -0.13
CCDC88A-201ENST00000263630 INTS11Q5TA45 600 aaKnown RBP14.26□□□□□ -0.13
CCDC88A-201ENST00000263630 KBTBD8Q8NFY9 601 aa14.26□□□□□ -0.13
CCDC88A-201ENST00000263630 PCDHB2Q9Y5E7 798 aa14.26□□□□□ -0.13
CCDC88A-201ENST00000263630 PTGES3LE9PB15 166 aa14.26□□□□□ -0.13
CCDC88A-201ENST00000263630 PARNO95453 639 aaKnown RBP14.26□□□□□ -0.13
CCDC88A-201ENST00000263630 AP3S2P59780 193 aa14.26□□□□□ -0.13
CCDC88A-201ENST00000263630 SH2D3CQ8N5H7 860 aa14.26□□□□□ -0.13
CCDC88A-201ENST00000263630 LYVE1Q9Y5Y7 322 aa14.26□□□□□ -0.13
CCDC88A-201ENST00000263630 MAGEB16A2A368 324 aa14.26□□□□□ -0.13
CCDC88A-201ENST00000263630 ERICH5Q6P6B1 374 aa14.26□□□□□ -0.13
CCDC88A-201ENST00000263630 DHFR2Q86XF0 187 aa14.26□□□□□ -0.13
CCDC88A-201ENST00000263630 QRFPRQ96P65 431 aa14.26□□□□□ -0.13
CCDC88A-201ENST00000263630 LRRC40Q9H9A6 602 aa14.26□□□□□ -0.13
CCDC88A-201ENST00000263630 PNPLA8Q9NP80 782 aa14.26□□□□□ -0.13
CCDC88A-201ENST00000263630 ULK1O75385 1050 aa14.26□□□□□ -0.13
CCDC88A-201ENST00000263630 SMIM11AP58511 58 aa14.26□□□□□ -0.13
CCDC88A-201ENST00000263630 EHD1Q9H4M9 534 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms