RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 SMARCB1Q12824 385 aa23.5■■□□□ 1.35
CDX1-201ENST00000231656 ZC3H12AQ5D1E8 599 aaKnown RBP23.5■■□□□ 1.35
CDX1-201ENST00000231656 VSTM1Q6UX27 236 aa23.5■■□□□ 1.35
CDX1-201ENST00000231656 HOOK3Q86VS8 718 aa23.5■■□□□ 1.35
CDX1-201ENST00000231656 SIX6OS1Q8N1H7 587 aa23.5■■□□□ 1.35
CDX1-201ENST00000231656 PWWP2AQ96N64 755 aa23.5■■□□□ 1.35
CDX1-201ENST00000231656 RNF157Q96PX1 679 aa23.5■■□□□ 1.35
CDX1-201ENST00000231656 CLSTN3Q9BQT9 956 aa23.5■■□□□ 1.35
CDX1-201ENST00000231656 FOXP3Q9BZS1 431 aa23.5■■□□□ 1.35
CDX1-201ENST00000231656 PCDH18Q9HCL0 1135 aa23.5■■□□□ 1.35
CDX1-201ENST00000231656 GPATCH2LQ9NWQ4 482 aa23.5■■□□□ 1.35
CDX1-201ENST00000231656 STK39Q9UEW8 545 aa23.5■■□□□ 1.35
CDX1-201ENST00000231656 MTMR11A4FU01 709 aa23.49■■□□□ 1.35
CDX1-201ENST00000231656 SGK1O00141 431 aa23.49■■□□□ 1.35
CDX1-201ENST00000231656 VNN2O95498 520 aa23.49■■□□□ 1.35
CDX1-201ENST00000231656 ROR1Q01973 937 aa23.49■■□□□ 1.35
CDX1-201ENST00000231656 GPS1Q13098 491 aa23.49■■□□□ 1.35
CDX1-201ENST00000231656 KRT81Q14533 505 aa23.49■■□□□ 1.35
CDX1-201ENST00000231656 EFHC1Q5JVL4 640 aa23.49■■□□□ 1.35
CDX1-201ENST00000231656 FAM109BQ6ICB4 259 aaPredicted RBP23.49■■□□□ 1.35
CDX1-201ENST00000231656 VSIG1Q86XK7 387 aa23.49■■□□□ 1.35
CDX1-201ENST00000231656 ZCCHC9Q8N567 271 aaKnown RBP23.49■■□□□ 1.35
CDX1-201ENST00000231656 SPPL2BQ8TCT7 592 aa23.49■■□□□ 1.35
CDX1-201ENST00000231656 WDR27A2RRH5 827 aa23.48■■□□□ 1.35
CDX1-201ENST00000231656 LINC01553A4QN01 128 aa23.48■■□□□ 1.35
CDX1-201ENST00000231656 GRXCR1A8MXD5 290 aa23.48■■□□□ 1.35
CDX1-201ENST00000231656 MYOGP15173 224 aa23.48■■□□□ 1.35
CDX1-201ENST00000231656 BMPR1AP36894 532 aa23.48■■□□□ 1.35
CDX1-201ENST00000231656 MAGEA11P43364 429 aa23.48■■□□□ 1.35
CDX1-201ENST00000231656 TFDP2Q14188 446 aa23.48■■□□□ 1.35
CDX1-201ENST00000231656 CA9Q16790 459 aa23.48■■□□□ 1.35
CDX1-201ENST00000231656 RELL1Q8IUW5 271 aa23.48■■□□□ 1.35
CDX1-201ENST00000231656 MAP7D3Q8IWC1 876 aa23.48■■□□□ 1.35
CDX1-201ENST00000231656 TTC9BQ8N6N2 239 aa23.48■■□□□ 1.35
CDX1-201ENST00000231656 AUTS2Q8WXX7 1259 aa23.48■■□□□ 1.35
CDX1-201ENST00000231656 TLCD1Q96CP7 247 aa23.48■■□□□ 1.35
CDX1-201ENST00000231656 MAK16Q9BXY0 300 aaKnown RBP23.48■■□□□ 1.35
CDX1-201ENST00000231656 CAPS2Q9BXY5 557 aa23.48■■□□□ 1.35
CDX1-201ENST00000231656 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP23.48■■□□□ 1.35
CDX1-201ENST00000231656 TPX2Q9ULW0 747 aaKnown RBP23.48■■□□□ 1.35
CDX1-201ENST00000231656 DNAJB2P25686 324 aa23.47■■□□□ 1.35
CDX1-201ENST00000231656 GDF10P55107 478 aa23.47■■□□□ 1.35
CDX1-201ENST00000231656 EIF3EP60228 445 aaKnown RBP23.47■■□□□ 1.35
CDX1-201ENST00000231656 MRPS5P82675 430 aaKnown RBP23.47■■□□□ 1.35
CDX1-201ENST00000231656 NOMO1Q15155 1222 aa23.47■■□□□ 1.35
CDX1-201ENST00000231656 SCN4BQ8IWT1 228 aa23.47■■□□□ 1.35
CDX1-201ENST00000231656 C2orf15Q8WU43 125 aaKnown RBP23.47■■□□□ 1.35
CDX1-201ENST00000231656 NDRG1Q92597 394 aaKnown RBP23.47■■□□□ 1.35
CDX1-201ENST00000231656 ULBP1Q9BZM6 244 aa23.47■■□□□ 1.35
CDX1-201ENST00000231656 ZBP1Q9H171 429 aa23.47■■□□□ 1.35
CDX1-201ENST00000231656 CRISPLD1Q9H336 500 aa23.47■■□□□ 1.35
CDX1-201ENST00000231656 C10orf88Q9H8K7 445 aa23.47■■□□□ 1.35
CDX1-201ENST00000231656 MRPL17Q9NRX2 175 aaKnown RBP23.47■■□□□ 1.35
CDX1-201ENST00000231656 DNAJC17Q9NVM6 304 aaKnown RBP23.47■■□□□ 1.35
CDX1-201ENST00000231656 CHD9Q3L8U1 2897 aa23.47■■□□□ 1.35
CDX1-201ENST00000231656 ZNF487B1APH4 448 aa23.47■■□□□ 1.35
CDX1-201ENST00000231656 FBXO21O94952 628 aa23.47■■□□□ 1.35
CDX1-201ENST00000231656 TTC4O95801 387 aa23.47■■□□□ 1.35
CDX1-201ENST00000231656 CTNNB1P35222 781 aa23.47■■□□□ 1.35
CDX1-201ENST00000231656 ATP1A2P50993 1020 aa23.47■■□□□ 1.35
CDX1-201ENST00000231656 RNASEH2BQ5TBB1 312 aaKnown RBP23.47■■□□□ 1.35
CDX1-201ENST00000231656 NPNTQ6UXI9 565 aa23.47■■□□□ 1.35
CDX1-201ENST00000231656 UHMK1Q8TAS1 419 aaKnown RBP23.47■■□□□ 1.35
CDX1-201ENST00000231656 FAF2Q96CS3 445 aa23.47■■□□□ 1.35
CDX1-201ENST00000231656 C8orf48Q96LL4 319 aa23.47■■□□□ 1.35
CDX1-201ENST00000231656 CNGB3Q9NQW8 809 aa23.47■■□□□ 1.35
CDX1-201ENST00000231656 NINJ2Q9NZG7 142 aa23.47■■□□□ 1.35
CDX1-201ENST00000231656 BCCIPQ9P287 314 aaKnown RBP eCLIP23.47■■□□□ 1.35
CDX1-201ENST00000231656 NOVA2Q9UNW9 492 aaKnown RBP23.47■■□□□ 1.35
CDX1-201ENST00000231656 SLC27A5Q9Y2P5 690 aa23.47■■□□□ 1.35
CDX1-201ENST00000231656 TNFRSF10BO14763 440 aa23.46■■□□□ 1.35
CDX1-201ENST00000231656 MCF2LO15068 1137 aa23.46■■□□□ 1.35
CDX1-201ENST00000231656 DAB1O75553 588 aa23.46■■□□□ 1.35
CDX1-201ENST00000231656 IFNB1P01574 187 aa23.46■■□□□ 1.35
CDX1-201ENST00000231656 ACTN2P35609 894 aa23.46■■□□□ 1.35
CDX1-201ENST00000231656 MATKP42679 507 aa23.46■■□□□ 1.35
CDX1-201ENST00000231656 ATXN1P54253 815 aaKnown RBP23.46■■□□□ 1.35
CDX1-201ENST00000231656 MORF4L2Q15014 288 aa23.46■■□□□ 1.35
CDX1-201ENST00000231656 DDR2Q16832 855 aa23.46■■□□□ 1.35
CDX1-201ENST00000231656 ANKRD20A8PQ5CZ79 823 aa23.46■■□□□ 1.35
CDX1-201ENST00000231656 STRADAQ7RTN6 431 aa23.46■■□□□ 1.35
CDX1-201ENST00000231656 CROCCP2Q86T23 111 aa23.46■■□□□ 1.35
CDX1-201ENST00000231656 GPR65Q8IYL9 337 aa23.46■■□□□ 1.35
CDX1-201ENST00000231656 PQLC3Q8N755 202 aa23.46■■□□□ 1.35
CDX1-201ENST00000231656 PGM2Q96G03 612 aa23.46■■□□□ 1.35
CDX1-201ENST00000231656 ZNF670Q9BS34 389 aa23.46■■□□□ 1.35
CDX1-201ENST00000231656 RWDD3Q9Y3V2 267 aa23.46■■□□□ 1.35
CDX1-201ENST00000231656 ERICH4A6NGS2 130 aa23.45■■□□□ 1.34
CDX1-201ENST00000231656 TRIM66O15016 1216 aa23.45■■□□□ 1.34
CDX1-201ENST00000231656 ARHGEF15O94989 841 aa23.45■■□□□ 1.34
CDX1-201ENST00000231656 USP17L7P0C7H9 530 aa23.45■■□□□ 1.34
CDX1-201ENST00000231656 CTSAP10619 480 aa23.45■■□□□ 1.34
CDX1-201ENST00000231656 GPR15P49685 360 aa23.45■■□□□ 1.34
CDX1-201ENST00000231656 IRAK1P51617 712 aa23.45■■□□□ 1.34
CDX1-201ENST00000231656 DAOAP59103 153 aa23.45■■□□□ 1.34
CDX1-201ENST00000231656 DUSP4Q13115 394 aa23.45■■□□□ 1.34
CDX1-201ENST00000231656 ERMARDQ5T6L9 678 aa23.45■■□□□ 1.34
CDX1-201ENST00000231656 SLC9A4Q6AI14 798 aa23.45■■□□□ 1.34
CDX1-201ENST00000231656 CEP128Q6ZU80 1094 aa23.45■■□□□ 1.34
CDX1-201ENST00000231656 UNC45BQ8IWX7 931 aa23.45■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 93 ms