RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 SPACA7Q96KW9 195 aa19.99■□□□□ 0.79
CCDC28A-203ENST00000617445 IPO9Q96P70 1041 aaKnown RBP19.99■□□□□ 0.79
CCDC28A-203ENST00000617445 TPSD1Q9BZJ3 242 aa19.99■□□□□ 0.79
CCDC28A-203ENST00000617445 ULBP1Q9BZM6 244 aa19.99■□□□□ 0.79
CCDC28A-203ENST00000617445 CNGB3Q9NQW8 809 aa19.99■□□□□ 0.79
CCDC28A-203ENST00000617445 FBXO10Q9UK96 956 aa19.99■□□□□ 0.79
CCDC28A-203ENST00000617445 GON4LQ3T8J9 2241 aa19.99■□□□□ 0.79
CCDC28A-203ENST00000617445 BCLAF3A2AJT9 711 aaKnown RBP19.98■□□□□ 0.79
CCDC28A-203ENST00000617445 ANTXRLA6NF34 631 aa19.98■□□□□ 0.79
CCDC28A-203ENST00000617445 KLKB1P03952 638 aa19.98■□□□□ 0.79
CCDC28A-203ENST00000617445 HNRNPLP14866 589 aaKnown RBP eCLIP19.98■□□□□ 0.79
CCDC28A-203ENST00000617445 DGKGP49619 791 aa19.98■□□□□ 0.79
CCDC28A-203ENST00000617445 UBE2HP62256 183 aa19.98■□□□□ 0.79
CCDC28A-203ENST00000617445 GCNT1Q02742 428 aa19.98■□□□□ 0.79
CCDC28A-203ENST00000617445 PKDCCQ504Y2 493 aa19.98■□□□□ 0.79
CCDC28A-203ENST00000617445 SPDYCQ5MJ68 293 aa19.98■□□□□ 0.79
CCDC28A-203ENST00000617445 TRIM59Q8IWR1 403 aa19.98■□□□□ 0.79
CCDC28A-203ENST00000617445 SIX6OS1Q8N1H7 587 aa19.98■□□□□ 0.79
CCDC28A-203ENST00000617445 PPM1KQ8N3J5 372 aa19.98■□□□□ 0.79
CCDC28A-203ENST00000617445 CPXM2Q8N436 756 aa19.98■□□□□ 0.79
CCDC28A-203ENST00000617445 EHBP1Q8NDI1 1231 aa19.98■□□□□ 0.79
CCDC28A-203ENST00000617445 PLD4Q96BZ4 506 aa19.98■□□□□ 0.79
CCDC28A-203ENST00000617445 BCCIPQ9P287 314 aaKnown RBP eCLIP19.98■□□□□ 0.79
CCDC28A-203ENST00000617445 CTNND2Q9UQB3 1225 aa19.98■□□□□ 0.79
CCDC28A-203ENST00000617445 SLC27A6Q9Y2P4 619 aa19.98■□□□□ 0.79
CCDC28A-203ENST00000617445 PCDHB4Q9Y5E5 795 aa19.98■□□□□ 0.79
CCDC28A-203ENST00000617445 PLXND1Q9Y4D7 1925 aa19.98■□□□□ 0.79
CCDC28A-203ENST00000617445 GFRA2O00451 464 aa19.97■□□□□ 0.79
CCDC28A-203ENST00000617445 BIN1O00499 593 aa19.97■□□□□ 0.79
CCDC28A-203ENST00000617445 NPC1O15118 1278 aa19.97■□□□□ 0.79
CCDC28A-203ENST00000617445 CAVIN2O95810 425 aa19.97■□□□□ 0.79
CCDC28A-203ENST00000617445 PENKP01210 267 aaPredicted RBP19.97■□□□□ 0.79
CCDC28A-203ENST00000617445 CYBBP04839 570 aa19.97■□□□□ 0.79
CCDC28A-203ENST00000617445 CISD3P0C7P0 127 aa19.97■□□□□ 0.79
CCDC28A-203ENST00000617445 CORO1AP31146 461 aaKnown RBP19.97■□□□□ 0.79
CCDC28A-203ENST00000617445 P2RY2P41231 377 aa19.97■□□□□ 0.79
CCDC28A-203ENST00000617445 CREB5Q02930 508 aa19.97■□□□□ 0.79
CCDC28A-203ENST00000617445 ADIGQ0VDE8 80 aa19.97■□□□□ 0.79
CCDC28A-203ENST00000617445 KCNH2Q12809 1159 aa19.97■□□□□ 0.79
CCDC28A-203ENST00000617445 UBA3Q8TBC4 463 aa19.97■□□□□ 0.79
CCDC28A-203ENST00000617445 RNF139Q8WU17 664 aa19.97■□□□□ 0.79
CCDC28A-203ENST00000617445 SRRTQ9BXP5 876 aaKnown RBP19.97■□□□□ 0.79
CCDC28A-203ENST00000617445 ABCC13Q9NSE7 274 aa19.97■□□□□ 0.79
CCDC28A-203ENST00000617445 HBS1LQ9Y450 684 aaKnown RBP19.97■□□□□ 0.79
CCDC28A-203ENST00000617445 UTP18Q9Y5J1 556 aaKnown RBP eCLIP19.97■□□□□ 0.79
CCDC28A-203ENST00000617445 TCRBV21S2A2A0A5A6 115 aa19.96■□□□□ 0.79
CCDC28A-203ENST00000617445 SLC12A8A0AV02 714 aa19.96■□□□□ 0.79
CCDC28A-203ENST00000617445 MED19A0JLT2 244 aaPredicted RBP19.96■□□□□ 0.79
CCDC28A-203ENST00000617445 DCDC2BA2VCK2 349 aa19.96■□□□□ 0.79
CCDC28A-203ENST00000617445 TULP2O00295 520 aa19.96■□□□□ 0.79
CCDC28A-203ENST00000617445 GDF9O60383 454 aa19.96■□□□□ 0.79
CCDC28A-203ENST00000617445 AFPP02771 609 aaKnown RBP19.96■□□□□ 0.79
CCDC28A-203ENST00000617445 DPP6P42658 865 aa19.96■□□□□ 0.79
CCDC28A-203ENST00000617445 HARS2P49590 506 aaKnown RBP19.96■□□□□ 0.79
CCDC28A-203ENST00000617445 ZNF445P59923 1031 aa19.96■□□□□ 0.79
CCDC28A-203ENST00000617445 SF3A2Q15428 464 aaKnown RBP19.96■□□□□ 0.79
CCDC28A-203ENST00000617445 TRIP4Q15650 581 aaPredicted RBP19.96■□□□□ 0.79
CCDC28A-203ENST00000617445 BSPRYQ5W0U4 402 aa19.96■□□□□ 0.79
CCDC28A-203ENST00000617445 IL31Q6EBC2 164 aa19.96■□□□□ 0.79
CCDC28A-203ENST00000617445 LPCAT2Q7L5N7 544 aa19.96■□□□□ 0.79
CCDC28A-203ENST00000617445 PGBD3Q8N328 593 aa19.96■□□□□ 0.79
CCDC28A-203ENST00000617445 SLC35F5Q8WV83 523 aa19.96■□□□□ 0.79
CCDC28A-203ENST00000617445 HMGB4Q8WW32 186 aa19.96■□□□□ 0.79
CCDC28A-203ENST00000617445 KIAA1468Q9P260 1216 aa19.96■□□□□ 0.79
CCDC28A-203ENST00000617445 AGO1Q9UL18 857 aaKnown RBP19.96■□□□□ 0.79
CCDC28A-203ENST00000617445 TRIM24O15164 1050 aa19.95■□□□□ 0.78
CCDC28A-203ENST00000617445 MAP3K13O43283 966 aa19.95■□□□□ 0.78
CCDC28A-203ENST00000617445 HMBSP08397 361 aa19.95■□□□□ 0.78
CCDC28A-203ENST00000617445 HOXB2P14652 356 aa19.95■□□□□ 0.78
CCDC28A-203ENST00000617445 ZNF132P52740 706 aa19.95■□□□□ 0.78
CCDC28A-203ENST00000617445 STX17P56962 302 aa19.95■□□□□ 0.78
CCDC28A-203ENST00000617445 FYB2Q5VWT5 728 aa19.95■□□□□ 0.78
CCDC28A-203ENST00000617445 BHLHA9Q7RTU4 235 aa19.95■□□□□ 0.78
CCDC28A-203ENST00000617445 DENND1CQ8IV53 801 aa19.95■□□□□ 0.78
CCDC28A-203ENST00000617445 FAM217AQ8IXS0 508 aa19.95■□□□□ 0.78
CCDC28A-203ENST00000617445 CHPFQ8IZ52 775 aa19.95■□□□□ 0.78
CCDC28A-203ENST00000617445 IRGQQ8WZA9 623 aa19.95■□□□□ 0.78
CCDC28A-203ENST00000617445 TFAP2BQ92481 460 aa19.95■□□□□ 0.78
CCDC28A-203ENST00000617445 HSFY1Q96LI6 401 aa19.95■□□□□ 0.78
CCDC28A-203ENST00000617445 FAM81BQ96LP2 452 aa19.95■□□□□ 0.78
CCDC28A-203ENST00000617445 GABRG3Q99928 467 aa19.95■□□□□ 0.78
CCDC28A-203ENST00000617445 SLC2A11Q9BYW1 496 aa19.95■□□□□ 0.78
CCDC28A-203ENST00000617445 HCN2Q9UL51 889 aa19.95■□□□□ 0.78
CCDC28A-203ENST00000617445 WDR3Q9UNX4 943 aaKnown RBP eCLIP19.95■□□□□ 0.78
CCDC28A-203ENST00000617445 INVSQ9Y283 1065 aa19.95■□□□□ 0.78
CCDC28A-203ENST00000617445 PRRT4C9JH25 899 aa19.94■□□□□ 0.78
CCDC28A-203ENST00000617445 LATS1O95835 1130 aa19.94■□□□□ 0.78
CCDC28A-203ENST00000617445 CCDC6Q16204 474 aa19.94■□□□□ 0.78
CCDC28A-203ENST00000617445 EGFLAMQ63HQ2 1017 aa19.94■□□□□ 0.78
CCDC28A-203ENST00000617445 SMYD5Q6GMV2 418 aa19.94■□□□□ 0.78
CCDC28A-203ENST00000617445 SLC36A4Q6YBV0 504 aa19.94■□□□□ 0.78
CCDC28A-203ENST00000617445 TOGARAM2Q6ZUX3 1019 aa19.94■□□□□ 0.78
CCDC28A-203ENST00000617445 ENOSF1Q7L5Y1 443 aa19.94■□□□□ 0.78
CCDC28A-203ENST00000617445 FMNL3Q8IVF7 1028 aa19.94■□□□□ 0.78
CCDC28A-203ENST00000617445 RBBP8NLQ8NC74 664 aaPredicted RBP19.94■□□□□ 0.78
CCDC28A-203ENST00000617445 UCMAQ8WVF2 138 aa19.94■□□□□ 0.78
CCDC28A-203ENST00000617445 ZDHHC4Q9NPG8 344 aa19.94■□□□□ 0.78
CCDC28A-203ENST00000617445 PLK2Q9NYY3 685 aa19.94■□□□□ 0.78
CCDC28A-203ENST00000617445 CHMP5Q9NZZ3 219 aa19.94■□□□□ 0.78
CCDC28A-203ENST00000617445 RWDD2AQ9UIY3 292 aa19.94■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 62.4 ms