RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-213ENST00000542641 DQX1Q8TE96 717 aaKnown RBP12.1□□□□□ -0.47
YBX3-213ENST00000542641 SMARCD2Q92925 531 aa12.1□□□□□ -0.47
YBX3-213ENST00000542641 RPGRIP1Q96KN7 1286 aa12.1□□□□□ -0.47
YBX3-213ENST00000542641 ASB16Q96NS5 453 aa12.1□□□□□ -0.47
YBX3-213ENST00000542641 SMG9Q9H0W8 520 aaKnown RBP12.1□□□□□ -0.47
YBX3-213ENST00000542641 SMOC2Q9H3U7 446 aa12.1□□□□□ -0.47
YBX3-213ENST00000542641 TDP1Q9NUW8 608 aa12.1□□□□□ -0.47
YBX3-213ENST00000542641 SMPD4Q9NXE4 827 aa12.1□□□□□ -0.47
YBX3-213ENST00000542641 UVRAGQ9P2Y5 699 aa12.1□□□□□ -0.47
YBX3-213ENST00000542641 SFMBT1Q9UHJ3 866 aa12.1□□□□□ -0.47
YBX3-213ENST00000542641 USTQ9Y2C2 406 aa12.1□□□□□ -0.47
YBX3-213ENST00000542641 NR2E1Q9Y466 385 aa12.1□□□□□ -0.47
YBX3-213ENST00000542641 CPQQ9Y646 472 aa12.1□□□□□ -0.47
YBX3-213ENST00000542641 ADGRG1Q9Y653 693 aa12.1□□□□□ -0.47
YBX3-213ENST00000542641 C2orf16Q68DN1 1984 aa12.1□□□□□ -0.47
YBX3-213ENST00000542641 COL6A3P12111 3177 aa12.1□□□□□ -0.47
YBX3-213ENST00000542641 NOTCH4Q99466 2003 aa12.1□□□□□ -0.47
YBX3-213ENST00000542641 ZNF638Q14966 1978 aaKnown RBP12.09□□□□□ -0.47
YBX3-213ENST00000542641 SYNJ2BP-COX16A0A087WUM0 186 aa12.09□□□□□ -0.47
YBX3-213ENST00000542641 SLC12A8A0AV02 714 aa12.09□□□□□ -0.47
YBX3-213ENST00000542641 RCCD1A6NED2 376 aa12.09□□□□□ -0.47
YBX3-213ENST00000542641 M0QYT0 321 aa12.09□□□□□ -0.47
YBX3-213ENST00000542641 TRUB2O95900 331 aaKnown RBP12.09□□□□□ -0.47
YBX3-213ENST00000542641 CCDC175P0C221 793 aa12.09□□□□□ -0.47
YBX3-213ENST00000542641 IL9P15248 144 aa12.09□□□□□ -0.47
YBX3-213ENST00000542641 DESP17661 470 aa12.09□□□□□ -0.47
YBX3-213ENST00000542641 WEE1P30291 646 aa12.09□□□□□ -0.47
YBX3-213ENST00000542641 SULT1E1P49888 294 aa12.09□□□□□ -0.47
YBX3-213ENST00000542641 KCNQ1P51787 676 aa12.09□□□□□ -0.47
YBX3-213ENST00000542641 ZNF143P52747 638 aaPredicted RBP12.09□□□□□ -0.47
YBX3-213ENST00000542641 PITX1P78337 314 aaPredicted RBP12.09□□□□□ -0.47
YBX3-213ENST00000542641 COG7P83436 770 aa12.09□□□□□ -0.47
YBX3-213ENST00000542641 ATP11AP98196 1134 aa12.09□□□□□ -0.47
YBX3-213ENST00000542641 KIF5AQ12840 1032 aa12.09□□□□□ -0.47
YBX3-213ENST00000542641 NME3Q13232 169 aa12.09□□□□□ -0.47
YBX3-213ENST00000542641 CCDC14Q49A88 953 aa12.09□□□□□ -0.47
YBX3-213ENST00000542641 RHOT2Q8IXI1 618 aa12.09□□□□□ -0.47
YBX3-213ENST00000542641 TDRD5Q8NAT2 981 aaKnown RBP12.09□□□□□ -0.47
YBX3-213ENST00000542641 ZNF564Q8TBZ8 553 aaPredicted RBP12.09□□□□□ -0.47
YBX3-213ENST00000542641 ATXN2LQ8WWM7 1075 aaKnown RBP12.09□□□□□ -0.47
YBX3-213ENST00000542641 RFFLQ8WZ73 363 aa12.09□□□□□ -0.47
YBX3-213ENST00000542641 USP13Q92995 863 aaPredicted RBP12.09□□□□□ -0.47
YBX3-213ENST00000542641 NT5C3BQ969T7 300 aa12.09□□□□□ -0.47
YBX3-213ENST00000542641 CFAP57Q96MR6 1250 aa12.09□□□□□ -0.47
YBX3-213ENST00000542641 SERPINB11Q96P15 392 aa12.09□□□□□ -0.47
YBX3-213ENST00000542641 TBCBQ99426 244 aa12.09□□□□□ -0.47
YBX3-213ENST00000542641 NPY6RQ99463 290 aa12.09□□□□□ -0.47
YBX3-213ENST00000542641 CNPY3Q9BT09 278 aa12.09□□□□□ -0.47
YBX3-213ENST00000542641 KLF16Q9BXK1 252 aaPredicted RBP12.09□□□□□ -0.47
YBX3-213ENST00000542641 TRIM7Q9C029 511 aa12.09□□□□□ -0.47
YBX3-213ENST00000542641 LACRTQ9GZZ8 138 aa12.09□□□□□ -0.47
YBX3-213ENST00000542641 FAM204AQ9H8W3 233 aa12.09□□□□□ -0.47
YBX3-213ENST00000542641 GKN1Q9NS71 199 aa12.09□□□□□ -0.47
YBX3-213ENST00000542641 DDIT4Q9NX09 232 aa12.09□□□□□ -0.47
YBX3-213ENST00000542641 COX16Q9P0S2 106 aa12.09□□□□□ -0.47
YBX3-213ENST00000542641 EPS15L1Q9UBC2 864 aa12.09□□□□□ -0.47
YBX3-213ENST00000542641 ANAPC7Q9UJX3 599 aa12.09□□□□□ -0.47
YBX3-213ENST00000542641 ARHGAP26Q9UNA1 814 aa12.09□□□□□ -0.47
YBX3-213ENST00000542641 CCL26Q9Y258 94 aa12.09□□□□□ -0.47
YBX3-213ENST00000542641 DOCK6Q96HP0 2047 aa12.09□□□□□ -0.47
YBX3-213ENST00000542641 C5orf42Q9H799 3197 aa12.08□□□□□ -0.48
YBX3-213ENST00000542641 BRWD1Q9NSI6 2320 aa12.08□□□□□ -0.48
YBX3-213ENST00000542641 C2CD4DB7Z1M9 353 aa12.08□□□□□ -0.48
YBX3-213ENST00000542641 MYO1FO00160 1098 aa12.08□□□□□ -0.48
YBX3-213ENST00000542641 DPYSL4O14531 572 aa12.08□□□□□ -0.48
YBX3-213ENST00000542641 PJA2O43164 708 aa12.08□□□□□ -0.48
YBX3-213ENST00000542641 MSI1O43347 362 aaKnown RBP12.08□□□□□ -0.48
YBX3-213ENST00000542641 PRAMEF12O95522 483 aa12.08□□□□□ -0.48
YBX3-213ENST00000542641 HMBSP08397 361 aa12.08□□□□□ -0.48
YBX3-213ENST00000542641 TFE3P19532 575 aaPredicted RBP12.08□□□□□ -0.48
YBX3-213ENST00000542641 PSMA2P25787 234 aa12.08□□□□□ -0.48
YBX3-213ENST00000542641 VIPR2P41587 438 aa12.08□□□□□ -0.48
YBX3-213ENST00000542641 PTPN9P43378 593 aa12.08□□□□□ -0.48
YBX3-213ENST00000542641 NOP2P46087 812 aaKnown RBP12.08□□□□□ -0.48
YBX3-213ENST00000542641 KPNA1P52294 538 aaPredicted RBP12.08□□□□□ -0.48
YBX3-213ENST00000542641 TBX4P57082 545 aa12.08□□□□□ -0.48
YBX3-213ENST00000542641 OGDHQ02218 1023 aa12.08□□□□□ -0.48
YBX3-213ENST00000542641 DEUP1Q05D60 604 aa12.08□□□□□ -0.48
YBX3-213ENST00000542641 TRIP4Q15650 581 aaPredicted RBP12.08□□□□□ -0.48
YBX3-213ENST00000542641 CDO1Q16878 200 aa12.08□□□□□ -0.48
YBX3-213ENST00000542641 C15orf59Q2T9L4 293 aaPredicted RBP12.08□□□□□ -0.48
YBX3-213ENST00000542641 MTSS1LQ765P7 747 aa12.08□□□□□ -0.48
YBX3-213ENST00000542641 TAC4Q86UU9 113 aa12.08□□□□□ -0.48
YBX3-213ENST00000542641 CELF5Q8N6W0 485 aaKnown RBP12.08□□□□□ -0.48
YBX3-213ENST00000542641 ST13P5Q8NFI4 369 aaPredicted RBP12.08□□□□□ -0.48
YBX3-213ENST00000542641 SH3RF2Q8TEC5 729 aa12.08□□□□□ -0.48
YBX3-213ENST00000542641 RNF34Q969K3 372 aa12.08□□□□□ -0.48
YBX3-213ENST00000542641 KIF9Q9HAQ2 790 aa12.08□□□□□ -0.48
YBX3-213ENST00000542641 TRPV4Q9HBA0 871 aa12.08□□□□□ -0.48
YBX3-213ENST00000542641 ZFP14Q9HCL3 533 aa12.08□□□□□ -0.48
YBX3-213ENST00000542641 OSGEPQ9NPF4 335 aa12.08□□□□□ -0.48
YBX3-213ENST00000542641 TLR6Q9Y2C9 796 aa12.08□□□□□ -0.48
YBX3-213ENST00000542641 HBS1LQ9Y450 684 aaKnown RBP12.08□□□□□ -0.48
YBX3-213ENST00000542641 DUSP10Q9Y6W6 482 aa12.08□□□□□ -0.48
YBX3-213ENST00000542641 MYO16Q9Y6X6 1858 aa12.08□□□□□ -0.48
YBX3-213ENST00000542641 A0A0A6YYK5 440 aaPredicted RBP12.07□□□□□ -0.48
YBX3-213ENST00000542641 LEFTY2O00292 366 aa12.07□□□□□ -0.48
YBX3-213ENST00000542641 IRAK2O43187 625 aa12.07□□□□□ -0.48
YBX3-213ENST00000542641 CCP110O43303 1012 aa12.07□□□□□ -0.48
YBX3-213ENST00000542641 MTA2O94776 668 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 73.3 ms