RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, human

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR4-208	ENST00000459947	SMPD4	Q9NXE4	827 aa		11.16	□□□□□ -0.62
UBR4-208	ENST00000459947	ADAM22	Q9P0K1	906 aa		11.16	□□□□□ -0.62
UBR4-208	ENST00000459947	ARIH1	Q9Y4X5	557 aa	Predicted RBP	11.16	□□□□□ -0.62
UBR4-208	ENST00000459947	SCIN	Q9Y6U3	715 aa		11.16	□□□□□ -0.62
UBR4-208	ENST00000459947	SPECC1L-ADORA2A	F8WAN1	911 aa		11.16	□□□□□ -0.62
UBR4-208	ENST00000459947	ATG13	O75143	517 aa		11.16	□□□□□ -0.62
UBR4-208	ENST00000459947	AOC1	P19801	751 aa		11.16	□□□□□ -0.62
UBR4-208	ENST00000459947	CDR1	P51861	262 aa		11.16	□□□□□ -0.62
UBR4-208	ENST00000459947	GRSF1	Q12849	480 aa	Known RBP eCLIP	11.16	□□□□□ -0.62
UBR4-208	ENST00000459947	ARID5B	Q14865	1188 aa		11.16	□□□□□ -0.62
UBR4-208	ENST00000459947	TDRD12	Q587J7	1177 aa	Known RBP	11.16	□□□□□ -0.62
UBR4-208	ENST00000459947	TTC39B	Q5VTQ0	682 aa	Predicted RBP	11.16	□□□□□ -0.62
UBR4-208	ENST00000459947	DQX1	Q8TE96	717 aa	Known RBP	11.16	□□□□□ -0.62
UBR4-208	ENST00000459947	SLC22A12	Q96S37	553 aa		11.16	□□□□□ -0.62
UBR4-208	ENST00000459947	CYP2S1	Q96SQ9	504 aa		11.16	□□□□□ -0.62
UBR4-208	ENST00000459947	RPP25	Q9BUL9	199 aa	Known RBP	11.16	□□□□□ -0.62
UBR4-208	ENST00000459947	FAM204A	Q9H8W3	233 aa		11.16	□□□□□ -0.62
UBR4-208	ENST00000459947	LUC7L	Q9NQ29	371 aa	Known RBP	11.16	□□□□□ -0.62
UBR4-208	ENST00000459947	CA14	Q9ULX7	337 aa		11.16	□□□□□ -0.62
UBR4-208	ENST00000459947	TRDMT1	O14717	391 aa	Known RBP	11.16	□□□□□ -0.62
UBR4-208	ENST00000459947	STC2	O76061	302 aa		11.16	□□□□□ -0.62
UBR4-208	ENST00000459947	CTH	P32929	405 aa		11.16	□□□□□ -0.62
UBR4-208	ENST00000459947	MATK	P42679	507 aa		11.16	□□□□□ -0.62
UBR4-208	ENST00000459947	OLFML1	Q6UWY5	402 aa		11.16	□□□□□ -0.62
UBR4-208	ENST00000459947		Q6ZNB5	142 aa		11.16	□□□□□ -0.62
UBR4-208	ENST00000459947	FAM183BP	Q6ZVS7	135 aa		11.16	□□□□□ -0.62
UBR4-208	ENST00000459947	IRF2BP2	Q7Z5L9	587 aa		11.16	□□□□□ -0.62
UBR4-208	ENST00000459947	CD101	Q93033	1021 aa		11.16	□□□□□ -0.62
UBR4-208	ENST00000459947	STOML2	Q9UJZ1	356 aa		11.16	□□□□□ -0.62
UBR4-208	ENST00000459947	IGLV3-27	P01718	113 aa		11.15	□□□□□ -0.62
UBR4-208	ENST00000459947	ADH5	P11766	374 aa		11.15	□□□□□ -0.62
UBR4-208	ENST00000459947	UNG	P13051	313 aa	Predicted RBP	11.15	□□□□□ -0.62
UBR4-208	ENST00000459947	MPPE1	Q53F39	396 aa		11.15	□□□□□ -0.62
UBR4-208	ENST00000459947	FAM217A	Q8IXS0	508 aa		11.15	□□□□□ -0.62
UBR4-208	ENST00000459947	WDTC1	Q8N5D0	677 aa		11.15	□□□□□ -0.62
UBR4-208	ENST00000459947	C3orf20	Q8ND61	904 aa		11.15	□□□□□ -0.62
UBR4-208	ENST00000459947	PGAP3	Q96FM1	320 aa	Predicted RBP	11.15	□□□□□ -0.62
UBR4-208	ENST00000459947	PPP1R9B	Q96SB3	815 aa		11.15	□□□□□ -0.62
UBR4-208	ENST00000459947	CCL26	Q9Y258	94 aa		11.15	□□□□□ -0.62
UBR4-208	ENST00000459947	SSU72P8	A0A1W2PR75	194 aa		11.15	□□□□□ -0.62
UBR4-208	ENST00000459947	NPC1	O15118	1278 aa		11.15	□□□□□ -0.62
UBR4-208	ENST00000459947	RTN2	O75298	545 aa		11.15	□□□□□ -0.62
UBR4-208	ENST00000459947	PNMA6A	P0CW24	399 aa	Predicted RBP	11.15	□□□□□ -0.62
UBR4-208	ENST00000459947	CHRNB2	P17787	502 aa		11.15	□□□□□ -0.62
UBR4-208	ENST00000459947	FAM102A	Q5T9C2	384 aa	Predicted RBP	11.15	□□□□□ -0.62
UBR4-208	ENST00000459947	MAMSTR	Q6ZN01	415 aa		11.15	□□□□□ -0.62
UBR4-208	ENST00000459947	TRMT11	Q7Z4G4	463 aa	Known RBP	11.15	□□□□□ -0.62
UBR4-208	ENST00000459947	XYLT1	Q86Y38	959 aa		11.15	□□□□□ -0.62
UBR4-208	ENST00000459947	WFIKKN2	Q8TEU8	576 aa		11.15	□□□□□ -0.62
UBR4-208	ENST00000459947	ACD	Q96AP0	544 aa		11.15	□□□□□ -0.62
UBR4-208	ENST00000459947	SELENOO	Q9BVL4	669 aa		11.15	□□□□□ -0.62
UBR4-208	ENST00000459947	MRPL47	Q9HD33	250 aa	Known RBP	11.15	□□□□□ -0.62
UBR4-208	ENST00000459947	HPS4	Q9NQG7	708 aa		11.15	□□□□□ -0.62
UBR4-208	ENST00000459947	SPHK2	Q9NRA0	654 aa		11.15	□□□□□ -0.62
UBR4-208	ENST00000459947	OSER1	Q9NX31	292 aa		11.15	□□□□□ -0.62
UBR4-208	ENST00000459947	STK25	O00506	426 aa		11.15	□□□□□ -0.62
UBR4-208	ENST00000459947	APOD	P05090	189 aa		11.15	□□□□□ -0.62
UBR4-208	ENST00000459947	IRF1	P10914	325 aa		11.15	□□□□□ -0.62
UBR4-208	ENST00000459947	ARID5A	Q03989	594 aa		11.15	□□□□□ -0.62
UBR4-208	ENST00000459947	DHCR24	Q15392	516 aa		11.15	□□□□□ -0.62
UBR4-208	ENST00000459947	DNAJC24	Q6P3W2	148 aa		11.15	□□□□□ -0.62
UBR4-208	ENST00000459947	MIB1	Q86YT6	1006 aa		11.15	□□□□□ -0.62
UBR4-208	ENST00000459947	SCUBE3	Q8IX30	993 aa		11.15	□□□□□ -0.62
UBR4-208	ENST00000459947	P2RY13	Q9BPV8	354 aa		11.15	□□□□□ -0.62
UBR4-208	ENST00000459947	SMG9	Q9H0W8	520 aa	Known RBP	11.15	□□□□□ -0.62
UBR4-208	ENST00000459947	WNT6	Q9Y6F9	365 aa		11.15	□□□□□ -0.62
UBR4-208	ENST00000459947	NRG2	O14511	850 aa	Predicted RBP	11.14	□□□□□ -0.63
UBR4-208	ENST00000459947	TRUB2	O95900	331 aa	Known RBP	11.14	□□□□□ -0.63
UBR4-208	ENST00000459947	CORO1A	P31146	461 aa	Known RBP	11.14	□□□□□ -0.63
UBR4-208	ENST00000459947	CCR1	P32246	355 aa		11.14	□□□□□ -0.63
UBR4-208	ENST00000459947	MPP7	Q5T2T1	576 aa		11.14	□□□□□ -0.63
UBR4-208	ENST00000459947	TXLNB	Q8N3L3	684 aa		11.14	□□□□□ -0.63
UBR4-208	ENST00000459947	HJURP	Q8NCD3	748 aa	Predicted RBP	11.14	□□□□□ -0.63
UBR4-208	ENST00000459947	SLC20A1	Q8WUM9	679 aa		11.14	□□□□□ -0.63
UBR4-208	ENST00000459947	CYTH4	Q9UIA0	394 aa		11.14	□□□□□ -0.63
UBR4-208	ENST00000459947	SIT1	Q9Y3P8	196 aa		11.14	□□□□□ -0.63
UBR4-208	ENST00000459947	CYP17A1	P05093	508 aa		11.14	□□□□□ -0.63
UBR4-208	ENST00000459947	ABCB4	P21439	1286 aa		11.14	□□□□□ -0.63
UBR4-208	ENST00000459947	CDC25B	P30305	580 aa		11.14	□□□□□ -0.63
UBR4-208	ENST00000459947	PTPN9	P43378	593 aa		11.14	□□□□□ -0.63
UBR4-208	ENST00000459947	AIF1	P55008	147 aa		11.14	□□□□□ -0.63
UBR4-208	ENST00000459947	POTEH	Q6S545	545 aa		11.14	□□□□□ -0.63
UBR4-208	ENST00000459947	ARHGAP30	Q7Z6I6	1101 aa	Predicted RBP	11.14	□□□□□ -0.63
UBR4-208	ENST00000459947	DEFB106A	Q8N104	65 aa		11.14	□□□□□ -0.63
UBR4-208	ENST00000459947	PJA1	Q8NG27	643 aa		11.14	□□□□□ -0.63
UBR4-208	ENST00000459947	CLDN23	Q96B33	292 aa		11.14	□□□□□ -0.63
UBR4-208	ENST00000459947	BTN2A3P	Q96KV6	586 aa		11.14	□□□□□ -0.63
UBR4-208	ENST00000459947	DNAJC7	Q99615	494 aa		11.14	□□□□□ -0.63
UBR4-208	ENST00000459947	HCN4	Q9Y3Q4	1203 aa		11.14	□□□□□ -0.63
UBR4-208	ENST00000459947	EIF3CL	B5ME19	914 aa	Known RBP	11.14	□□□□□ -0.63
UBR4-208	ENST00000459947	AKR1B15	C9JRZ8	316 aa	Predicted RBP	11.14	□□□□□ -0.63
UBR4-208	ENST00000459947	ACSL4	O60488	711 aa		11.14	□□□□□ -0.63
UBR4-208	ENST00000459947	SDC4	P31431	198 aa		11.14	□□□□□ -0.63
UBR4-208	ENST00000459947	ARL13B	Q3SXY8	428 aa		11.14	□□□□□ -0.63
UBR4-208	ENST00000459947	C10orf76	Q5T2E6	689 aa		11.14	□□□□□ -0.63
UBR4-208	ENST00000459947	GRAMD4	Q6IC98	578 aa		11.14	□□□□□ -0.63
UBR4-208	ENST00000459947	UCMA	Q8WVF2	138 aa		11.14	□□□□□ -0.63
UBR4-208	ENST00000459947	PNKP	Q96T60	521 aa		11.14	□□□□□ -0.63
UBR4-208	ENST00000459947	EIF3C	Q99613	913 aa	Known RBP	11.14	□□□□□ -0.63
UBR4-208	ENST00000459947	SYT11	Q9BT88	431 aa		11.14	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms