RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 CLDN3O15551 220 aa13.67□□□□□ -0.22
USP40-208ENST00000450966 FAM153BP0C7A2 387 aa13.67□□□□□ -0.22
USP40-208ENST00000450966 PRKACBP22694 351 aa13.67□□□□□ -0.22
USP40-208ENST00000450966 NNMTP40261 264 aa13.67□□□□□ -0.22
USP40-208ENST00000450966 GALCP54803 685 aa13.67□□□□□ -0.22
USP40-208ENST00000450966 MTMR2Q13614 643 aa13.67□□□□□ -0.22
USP40-208ENST00000450966 FAM153CQ494X1 144 aa13.67□□□□□ -0.22
USP40-208ENST00000450966 THNSL1Q8IYQ7 743 aa13.67□□□□□ -0.22
USP40-208ENST00000450966 FAM9CQ8IZT9 166 aa13.67□□□□□ -0.22
USP40-208ENST00000450966 KBTBD8Q8NFY9 601 aa13.67□□□□□ -0.22
USP40-208ENST00000450966 BTBD9Q96Q07 612 aa13.67□□□□□ -0.22
USP40-208ENST00000450966 ERGIC2Q96RQ1 377 aa13.67□□□□□ -0.22
USP40-208ENST00000450966 SP140LQ9H930 580 aa13.67□□□□□ -0.22
USP40-208ENST00000450966 VTA1Q9NP79 307 aa13.67□□□□□ -0.22
USP40-208ENST00000450966 SLCO1B7G3V0H7 640 aa13.66□□□□□ -0.22
USP40-208ENST00000450966 NADKO95544 446 aaPredicted RBP13.66□□□□□ -0.22
USP40-208ENST00000450966 FYNP06241 537 aa13.66□□□□□ -0.22
USP40-208ENST00000450966 AKAP5P24588 427 aa13.66□□□□□ -0.22
USP40-208ENST00000450966 SPIRE1Q08AE8 756 aa13.66□□□□□ -0.22
USP40-208ENST00000450966 BNIP1Q12981 228 aa13.66□□□□□ -0.22
USP40-208ENST00000450966 DRAP1Q14919 205 aaPredicted RBP13.66□□□□□ -0.22
USP40-208ENST00000450966 LRRC8DQ7L1W4 858 aa13.66□□□□□ -0.22
USP40-208ENST00000450966 RAB43Q86YS6 212 aa13.66□□□□□ -0.22
USP40-208ENST00000450966 FAR2Q96K12 515 aa13.66□□□□□ -0.22
USP40-208ENST00000450966 KLF6Q99612 283 aaPredicted RBP13.66□□□□□ -0.22
USP40-208ENST00000450966 COPS7BQ9H9Q2 264 aaPredicted RBP13.66□□□□□ -0.22
USP40-208ENST00000450966 SLC9A2Q9UBY0 812 aa13.66□□□□□ -0.22
USP40-208ENST00000450966 RAPGEFL1Q9UHV5 662 aa13.66□□□□□ -0.22
USP40-208ENST00000450966 EFCAB10A6NFE3 127 aa13.66□□□□□ -0.22
USP40-208ENST00000450966 CLDN25C9JDP6 229 aa13.66□□□□□ -0.22
USP40-208ENST00000450966 STK25O00506 426 aa13.66□□□□□ -0.22
USP40-208ENST00000450966 PORP16435 677 aaPredicted RBP13.66□□□□□ -0.22
USP40-208ENST00000450966 HERVK_113P62684 666 aa13.66□□□□□ -0.22
USP40-208ENST00000450966 ITPK1Q13572 414 aa13.66□□□□□ -0.22
USP40-208ENST00000450966 ERICH5Q6P6B1 374 aa13.66□□□□□ -0.22
USP40-208ENST00000450966 ERI1Q8IV48 349 aaKnown RBP13.66□□□□□ -0.22
USP40-208ENST00000450966 RCOR2Q8IZ40 523 aa13.66□□□□□ -0.22
USP40-208ENST00000450966 PLAGL2Q9UPG8 496 aa13.66□□□□□ -0.22
USP40-208ENST00000450966 SCAF8Q9UPN6 1271 aaKnown RBP13.66□□□□□ -0.22
USP40-208ENST00000450966 APOA4P06727 396 aa13.66□□□□□ -0.22
USP40-208ENST00000450966 RALBP11234 206 aa13.66□□□□□ -0.22
USP40-208ENST00000450966 PRKACAP17612 351 aa13.66□□□□□ -0.22
USP40-208ENST00000450966 NCF4Q15080 339 aa13.66□□□□□ -0.22
USP40-208ENST00000450966 ZNF284Q2VY69 593 aa13.66□□□□□ -0.22
USP40-208ENST00000450966 LDHDQ86WU2 507 aa13.66□□□□□ -0.22
USP40-208ENST00000450966 ETNK2Q9NVF9 386 aa13.66□□□□□ -0.22
USP40-208ENST00000450966 KCNK4Q9NYG8 393 aa13.66□□□□□ -0.22
USP40-208ENST00000450966 ZC3H7BQ9UGR2 993 aaKnown RBP13.66□□□□□ -0.22
USP40-208ENST00000450966 MAGED2Q9UNF1 606 aaPredicted RBP13.66□□□□□ -0.22
USP40-208ENST00000450966 PCDHA10Q9Y5I2 948 aa13.66□□□□□ -0.22
USP40-208ENST00000450966 TXNP10599 105 aaKnown RBP13.66□□□□□ -0.22
USP40-208ENST00000450966 MAPK10P53779 464 aa13.66□□□□□ -0.22
USP40-208ENST00000450966 KCNK10P57789 538 aa13.66□□□□□ -0.22
USP40-208ENST00000450966 DPYDQ12882 1025 aa13.66□□□□□ -0.22
USP40-208ENST00000450966 HMBOX1Q6NT76 420 aa13.66□□□□□ -0.22
USP40-208ENST00000450966 CDKL3Q8IVW4 592 aaPredicted RBP13.66□□□□□ -0.22
USP40-208ENST00000450966 YAF2Q8IY57 180 aa13.66□□□□□ -0.22
USP40-208ENST00000450966 EXT2Q93063 718 aa13.66□□□□□ -0.22
USP40-208ENST00000450966 PPP1R36Q96LQ0 422 aa13.66□□□□□ -0.22
USP40-208ENST00000450966 FAM213AQ9BRX8 229 aa13.66□□□□□ -0.22
USP40-208ENST00000450966 AASDHPPTQ9NRN7 309 aa13.66□□□□□ -0.22
USP40-208ENST00000450966 CAPN6Q9Y6Q1 641 aa13.66□□□□□ -0.22
USP40-208ENST00000450966 CYP2D7A0A087X1C5 515 aa13.65□□□□□ -0.22
USP40-208ENST00000450966 KDM4FA0A1W2PPD8 638 aa13.65□□□□□ -0.22
USP40-208ENST00000450966 PSMD11O00231 422 aa13.65□□□□□ -0.22
USP40-208ENST00000450966 AKR1B1P15121 316 aa13.65□□□□□ -0.22
USP40-208ENST00000450966 RPA1P27694 616 aa13.65□□□□□ -0.22
USP40-208ENST00000450966 SERPINB5P36952 375 aa13.65□□□□□ -0.22
USP40-208ENST00000450966 MMRN1Q13201 1228 aa13.65□□□□□ -0.22
USP40-208ENST00000450966 EPHA7Q15375 998 aa13.65□□□□□ -0.22
USP40-208ENST00000450966 C11orf91Q3C1V1 193 aa13.65□□□□□ -0.22
USP40-208ENST00000450966 ANGPTL8Q6UXH0 198 aa13.65□□□□□ -0.22
USP40-208ENST00000450966 FBXO33Q7Z6M2 555 aa13.65□□□□□ -0.22
USP40-208ENST00000450966 FBXO25Q8TCJ0 367 aa13.65□□□□□ -0.22
USP40-208ENST00000450966 MNTQ99583 582 aa13.65□□□□□ -0.22
USP40-208ENST00000450966 OLA1Q9NTK5 396 aaKnown RBP13.65□□□□□ -0.22
USP40-208ENST00000450966 FARP1Q9Y4F1 1045 aaPredicted RBP13.65□□□□□ -0.22
USP40-208ENST00000450966 KIF1AQ12756 1690 aa13.65□□□□□ -0.22
USP40-208ENST00000450966 ITSN1Q15811 1721 aa13.65□□□□□ -0.22
USP40-208ENST00000450966 LRRC7Q96NW7 1537 aa13.65□□□□□ -0.22
USP40-208ENST00000450966 SLC26A3P40879 764 aa13.65□□□□□ -0.22
USP40-208ENST00000450966 TSGA10IPQ3SY00 556 aa13.65□□□□□ -0.22
USP40-208ENST00000450966 AIFM3Q96NN9 605 aa13.65□□□□□ -0.22
USP40-208ENST00000450966 MAP3K14Q99558 947 aa13.65□□□□□ -0.22
USP40-208ENST00000450966 DEFB129Q9H1M3 183 aa13.65□□□□□ -0.22
USP40-208ENST00000450966 CHKBQ9Y259 395 aa13.65□□□□□ -0.22
USP40-208ENST00000450966 F8W810 466 aa13.65□□□□□ -0.22
USP40-208ENST00000450966 SNAP91O60641 907 aa13.65□□□□□ -0.22
USP40-208ENST00000450966 GLRA3O75311 464 aa13.65□□□□□ -0.22
USP40-208ENST00000450966 CENPPQ6IPU0 288 aa13.65□□□□□ -0.22
USP40-208ENST00000450966 EFHBQ8N7U6 833 aa13.65□□□□□ -0.22
USP40-208ENST00000450966 MTG1Q9BT17 334 aaPredicted RBP13.65□□□□□ -0.22
USP40-208ENST00000450966 SERHL2Q9H4I8 314 aa13.65□□□□□ -0.22
USP40-208ENST00000450966 MROH8Q9H579 483 aa13.65□□□□□ -0.22
USP40-208ENST00000450966 SERHLQ9NQF3 203 aa13.65□□□□□ -0.22
USP40-208ENST00000450966 PRDM5Q9NQX1 630 aaPredicted RBP13.65□□□□□ -0.22
USP40-208ENST00000450966 ACTL7BQ9Y614 415 aa13.65□□□□□ -0.22
USP40-208ENST00000450966 PMF1-BGLAPU3KQ54 211 aa13.65□□□□□ -0.22
USP40-208ENST00000450966 DNM1LO00429 736 aa13.65□□□□□ -0.22
USP40-208ENST00000450966 GABBR2O75899 941 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms