RNA–Protein interactions for RNA: ENST00000597396.5

SHKBP1-214, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 1,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-214ENST00000597396 ARNTLO00327 626 aa20.57■□□□□ 0.88
SHKBP1-214ENST00000597396 SLC9A3R1O14745 358 aaPredicted RBP20.57■□□□□ 0.88
SHKBP1-214ENST00000597396 SCAMP3O14828 347 aaKnown RBP20.57■□□□□ 0.88
SHKBP1-214ENST00000597396 ERBB2P04626 1255 aa20.57■□□□□ 0.88
SHKBP1-214ENST00000597396 KPNA1P52294 538 aaPredicted RBP20.57■□□□□ 0.88
SHKBP1-214ENST00000597396 COG7P83436 770 aa20.57■□□□□ 0.88
SHKBP1-214ENST00000597396 NHLH1Q02575 133 aa20.57■□□□□ 0.88
SHKBP1-214ENST00000597396 TNK2Q07912 1038 aa20.57■□□□□ 0.88
SHKBP1-214ENST00000597396 TRIM68Q6AZZ1 485 aa20.57■□□□□ 0.88
SHKBP1-214ENST00000597396 TOGARAM2Q6ZUX3 1019 aa20.57■□□□□ 0.88
SHKBP1-214ENST00000597396 FAM183BPQ6ZVS7 135 aa20.57■□□□□ 0.88
SHKBP1-214ENST00000597396 SUGP1Q8IWZ8 645 aaKnown RBP20.57■□□□□ 0.88
SHKBP1-214ENST00000597396 CPA5Q8WXQ8 436 aa20.57■□□□□ 0.88
SHKBP1-214ENST00000597396 SHDQ96IW2 340 aa20.57■□□□□ 0.88
SHKBP1-214ENST00000597396 AGPAT1Q99943 283 aa20.57■□□□□ 0.88
SHKBP1-214ENST00000597396 FAM83CQ9BQN1 747 aa20.57■□□□□ 0.88
SHKBP1-214ENST00000597396 TRIM5Q9C035 493 aa20.57■□□□□ 0.88
SHKBP1-214ENST00000597396 NUCKS1Q9H1E3 243 aaKnown RBP20.57■□□□□ 0.88
SHKBP1-214ENST00000597396 EBF3Q9H4W6 596 aa20.57■□□□□ 0.88
SHKBP1-214ENST00000597396 TRIOO75962 3097 aa20.57■□□□□ 0.88
SHKBP1-214ENST00000597396 SLC12A8A0AV02 714 aa20.56■□□□□ 0.88
SHKBP1-214ENST00000597396 KRBA1A5PL33 1030 aa20.56■□□□□ 0.88
SHKBP1-214ENST00000597396 STK25O00506 426 aa20.56■□□□□ 0.88
SHKBP1-214ENST00000597396 CAPN9O14815 690 aa20.56■□□□□ 0.88
SHKBP1-214ENST00000597396 CYP1A1P04798 512 aaPredicted RBP20.56■□□□□ 0.88
SHKBP1-214ENST00000597396 HMBSP08397 361 aa20.56■□□□□ 0.88
SHKBP1-214ENST00000597396 NCAM1P13591 858 aa20.56■□□□□ 0.88
SHKBP1-214ENST00000597396 ARSAP15289 507 aa20.56■□□□□ 0.88
SHKBP1-214ENST00000597396 PRKCQQ04759 706 aa20.56■□□□□ 0.88
SHKBP1-214ENST00000597396 RUNX3Q13761 415 aa20.56■□□□□ 0.88
SHKBP1-214ENST00000597396 ITPRIPL2Q3MIP1 535 aa20.56■□□□□ 0.88
SHKBP1-214ENST00000597396 EFHC1Q5JVL4 640 aa20.56■□□□□ 0.88
SHKBP1-214ENST00000597396 IER5LQ5T953 404 aa20.56■□□□□ 0.88
SHKBP1-214ENST00000597396 SARM1Q6SZW1 724 aa20.56■□□□□ 0.88
SHKBP1-214ENST00000597396 TPRG1Q6ZUI0 275 aa20.56■□□□□ 0.88
SHKBP1-214ENST00000597396 IRF2BP2Q7Z5L9 587 aa20.56■□□□□ 0.88
SHKBP1-214ENST00000597396 GAS2L3Q86XJ1 694 aa20.56■□□□□ 0.88
SHKBP1-214ENST00000597396 CPA6Q8N4T0 437 aa20.56■□□□□ 0.88
SHKBP1-214ENST00000597396 KIAA1958Q8N8K9 716 aa20.56■□□□□ 0.88
SHKBP1-214ENST00000597396 TTC8Q8TAM2 541 aa20.56■□□□□ 0.88
SHKBP1-214ENST00000597396 C18orf8Q96DM3 657 aa20.56■□□□□ 0.88
SHKBP1-214ENST00000597396 HPS4Q9NQG7 708 aa20.56■□□□□ 0.88
SHKBP1-214ENST00000597396 GTSE1Q9NYZ3 720 aa20.56■□□□□ 0.88
SHKBP1-214ENST00000597396 AIPL1Q9NZN9 384 aa20.56■□□□□ 0.88
SHKBP1-214ENST00000597396 TBC1D14Q9P2M4 693 aa20.56■□□□□ 0.88
SHKBP1-214ENST00000597396 CAPN11Q9UMQ6 739 aa20.56■□□□□ 0.88
SHKBP1-214ENST00000597396 LUC7L2Q9Y383 392 aaKnown RBP20.56■□□□□ 0.88
SHKBP1-214ENST00000597396 COL4A3Q01955 1670 aa20.55■□□□□ 0.88
SHKBP1-214ENST00000597396 ZNF318Q5VUA4 2279 aa20.55■□□□□ 0.88
SHKBP1-214ENST00000597396 PDGFBP01127 241 aaPredicted RBP20.55■□□□□ 0.88
SHKBP1-214ENST00000597396 TNFAIP3P21580 790 aa20.55■□□□□ 0.88
SHKBP1-214ENST00000597396 ZBED6P86452 979 aa20.55■□□□□ 0.88
SHKBP1-214ENST00000597396 KLHL30Q0D2K2 578 aa20.55■□□□□ 0.88
SHKBP1-214ENST00000597396 EML3Q32P44 896 aa20.55■□□□□ 0.88
SHKBP1-214ENST00000597396 SPECC1LQ69YQ0 1117 aa20.55■□□□□ 0.88
SHKBP1-214ENST00000597396 MSANTD2Q6P1R3 559 aa20.55■□□□□ 0.88
SHKBP1-214ENST00000597396 ZDHHC17Q8IUH5 632 aa20.55■□□□□ 0.88
SHKBP1-214ENST00000597396 ATP2A3Q93084 1043 aa20.55■□□□□ 0.88
SHKBP1-214ENST00000597396 WBP2Q969T9 261 aa20.55■□□□□ 0.88
SHKBP1-214ENST00000597396 LINC00597Q9H2U6 94 aa20.55■□□□□ 0.88
SHKBP1-214ENST00000597396 POPDC2Q9HBU9 364 aa20.55■□□□□ 0.88
SHKBP1-214ENST00000597396 SFMBT1Q9UHJ3 866 aa20.55■□□□□ 0.88
SHKBP1-214ENST00000597396 PIAS3Q9Y6X2 628 aa20.55■□□□□ 0.88
SHKBP1-214ENST00000597396 F5P12259 2224 aa20.55■□□□□ 0.88
SHKBP1-214ENST00000597396 STC2O76061 302 aa20.54■□□□□ 0.88
SHKBP1-214ENST00000597396 NFATC1O95644 943 aa20.54■□□□□ 0.88
SHKBP1-214ENST00000597396 GYPCP04921 128 aa20.54■□□□□ 0.88
SHKBP1-214ENST00000597396 GLI1P08151 1106 aa20.54■□□□□ 0.88
SHKBP1-214ENST00000597396 TPM1P09493 284 aa20.54■□□□□ 0.88
SHKBP1-214ENST00000597396 NSFP46459 744 aaKnown RBP20.54■□□□□ 0.88
SHKBP1-214ENST00000597396 GABRB2P47870 512 aa20.54■□□□□ 0.88
SHKBP1-214ENST00000597396 YWHAZP63104 245 aaKnown RBP20.54■□□□□ 0.88
SHKBP1-214ENST00000597396 SLC6A3Q01959 620 aa20.54■□□□□ 0.88
SHKBP1-214ENST00000597396 NR1H3Q13133 447 aa20.54■□□□□ 0.88
SHKBP1-214ENST00000597396 TRIM14Q14142 442 aa20.54■□□□□ 0.88
SHKBP1-214ENST00000597396 CLEC16AQ2KHT3 1053 aa20.54■□□□□ 0.88
SHKBP1-214ENST00000597396 E4F1Q66K89 784 aaPredicted RBP20.54■□□□□ 0.88
SHKBP1-214ENST00000597396 OLFML1Q6UWY5 402 aa20.54■□□□□ 0.88
SHKBP1-214ENST00000597396 VSTM4Q8IW00 320 aa20.54■□□□□ 0.88
SHKBP1-214ENST00000597396 FBXL6Q8N531 539 aa20.54■□□□□ 0.88
SHKBP1-214ENST00000597396 FLCNQ8NFG4 579 aa20.54■□□□□ 0.88
SHKBP1-214ENST00000597396 PIWIL1Q96J94 861 aaKnown RBP20.54■□□□□ 0.88
SHKBP1-214ENST00000597396 PCDHB18PQ96TA0 734 aa20.54■□□□□ 0.88
SHKBP1-214ENST00000597396 C8orf33Q9H7E9 229 aaPredicted RBP20.54■□□□□ 0.88
SHKBP1-214ENST00000597396 TBC1D17Q9HA65 648 aa20.54■□□□□ 0.88
SHKBP1-214ENST00000597396 ASNSD1Q9NWL6 643 aa20.54■□□□□ 0.88
SHKBP1-214ENST00000597396 NAALADL1Q9UQQ1 740 aa20.54■□□□□ 0.88
SHKBP1-214ENST00000597396 HBS1LQ9Y450 684 aaKnown RBP20.54■□□□□ 0.88
SHKBP1-214ENST00000597396 HSF2BPO75031 334 aa20.53■□□□□ 0.88
SHKBP1-214ENST00000597396 GRAP2O75791 330 aa20.53■□□□□ 0.88
SHKBP1-214ENST00000597396 CASP14P31944 242 aa20.53■□□□□ 0.88
SHKBP1-214ENST00000597396 PRKCIP41743 596 aa20.53■□□□□ 0.88
SHKBP1-214ENST00000597396 MRE11P49959 708 aa20.53■□□□□ 0.88
SHKBP1-214ENST00000597396 C2CD6Q53TS8 623 aa20.53■□□□□ 0.88
SHKBP1-214ENST00000597396 TDRD12Q587J7 1177 aaKnown RBP20.53■□□□□ 0.88
SHKBP1-214ENST00000597396 MMS22LQ6ZRQ5 1243 aa20.53■□□□□ 0.88
SHKBP1-214ENST00000597396 HTR3DQ70Z44 454 aa20.53■□□□□ 0.88
SHKBP1-214ENST00000597396 BEND5Q7L4P6 421 aa20.53■□□□□ 0.88
SHKBP1-214ENST00000597396 BBS7Q8IWZ6 715 aa20.53■□□□□ 0.88
SHKBP1-214ENST00000597396 SLC30A5Q8TAD4 765 aa20.53■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 148.1 ms