RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, human

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-223	ENST00000533079	TNFSF14	O43557	240 aa		13.14	□□□□□ -0.31
CAPN1-223	ENST00000533079	ATXN1L	P0C7T5	689 aa	Known RBP	13.14	□□□□□ -0.31
CAPN1-223	ENST00000533079	IRF1	P10914	325 aa		13.14	□□□□□ -0.31
CAPN1-223	ENST00000533079	HLA-E	P13747	358 aa		13.14	□□□□□ -0.31
CAPN1-223	ENST00000533079	PTMS	P20962	102 aa		13.14	□□□□□ -0.31
CAPN1-223	ENST00000533079	TXLNA	P40222	546 aa		13.14	□□□□□ -0.31
CAPN1-223	ENST00000533079	GRK6	P43250	576 aa		13.14	□□□□□ -0.31
CAPN1-223	ENST00000533079	AFF3	P51826	1226 aa	Known RBP	13.14	□□□□□ -0.31
CAPN1-223	ENST00000533079	GRIN1	Q05586	938 aa		13.14	□□□□□ -0.31
CAPN1-223	ENST00000533079	ENPP2	Q13822	863 aa		13.14	□□□□□ -0.31
CAPN1-223	ENST00000533079	SV2B	Q7L1I2	683 aa		13.14	□□□□□ -0.31
CAPN1-223	ENST00000533079	TRAPPC11	Q7Z392	1133 aa		13.14	□□□□□ -0.31
CAPN1-223	ENST00000533079	BRAP	Q7Z569	592 aa		13.14	□□□□□ -0.31
CAPN1-223	ENST00000533079	FAM35A	Q86V20	835 aa		13.14	□□□□□ -0.31
CAPN1-223	ENST00000533079	NXPE2	Q96DL1	559 aa		13.14	□□□□□ -0.31
CAPN1-223	ENST00000533079	TNIP3	Q96KP6	325 aa		13.14	□□□□□ -0.31
CAPN1-223	ENST00000533079	GPR174	Q9BXC1	333 aa		13.14	□□□□□ -0.31
CAPN1-223	ENST00000533079	B3GNT5	Q9BYG0	378 aa		13.14	□□□□□ -0.31
CAPN1-223	ENST00000533079	MIR1-1HG	Q9H1L0	117 aa		13.14	□□□□□ -0.31
CAPN1-223	ENST00000533079	SLC6A17	Q9H1V8	727 aa		13.14	□□□□□ -0.31
CAPN1-223	ENST00000533079	DPEP3	Q9H4B8	488 aa		13.14	□□□□□ -0.31
CAPN1-223	ENST00000533079	FBXO44	Q9H4M3	255 aa		13.14	□□□□□ -0.31
CAPN1-223	ENST00000533079	PCIF1	Q9H4Z3	704 aa		13.14	□□□□□ -0.31
CAPN1-223	ENST00000533079	OSGEP	Q9NPF4	335 aa		13.14	□□□□□ -0.31
CAPN1-223	ENST00000533079	TLR8	Q9NR97	1041 aa	Known RBP	13.14	□□□□□ -0.31
CAPN1-223	ENST00000533079	SLC27A6	Q9Y2P4	619 aa		13.14	□□□□□ -0.31
CAPN1-223	ENST00000533079	NME7	Q9Y5B8	376 aa		13.14	□□□□□ -0.31
CAPN1-223	ENST00000533079	STON1	Q9Y6Q2	735 aa		13.14	□□□□□ -0.31
CAPN1-223	ENST00000533079	HELZ2	Q9BYK8	2649 aa	Known RBP	13.14	□□□□□ -0.31
CAPN1-223	ENST00000533079	COL5A1	P20908	1838 aa	Predicted RBP	13.13	□□□□□ -0.31
CAPN1-223	ENST00000533079	MUC22	E2RYF6	1773 aa	Predicted RBP	13.13	□□□□□ -0.31
CAPN1-223	ENST00000533079	CLDN5	O00501	218 aa		13.13	□□□□□ -0.31
CAPN1-223	ENST00000533079	GREM1	O60565	184 aa		13.13	□□□□□ -0.31
CAPN1-223	ENST00000533079	ACADM	P11310	421 aa		13.13	□□□□□ -0.31
CAPN1-223	ENST00000533079	ATIC	P31939	592 aa		13.13	□□□□□ -0.31
CAPN1-223	ENST00000533079	TPMT	P51580	245 aa		13.13	□□□□□ -0.31
CAPN1-223	ENST00000533079	EIF4H	Q15056	248 aa	Known RBP	13.13	□□□□□ -0.31
CAPN1-223	ENST00000533079	TEAD4	Q15561	434 aa		13.13	□□□□□ -0.31
CAPN1-223	ENST00000533079	PTPRN	Q16849	979 aa		13.13	□□□□□ -0.31
CAPN1-223	ENST00000533079	WDR72	Q3MJ13	1102 aa		13.13	□□□□□ -0.31
CAPN1-223	ENST00000533079	KLHDC10	Q6PID8	442 aa		13.13	□□□□□ -0.31
CAPN1-223	ENST00000533079	TMPRSS12	Q86WS5	348 aa		13.13	□□□□□ -0.31
CAPN1-223	ENST00000533079	UCMA	Q8WVF2	138 aa		13.13	□□□□□ -0.31
CAPN1-223	ENST00000533079	SLC39A7	Q92504	469 aa		13.13	□□□□□ -0.31
CAPN1-223	ENST00000533079	PRCC	Q92733	491 aa	Predicted RBP	13.13	□□□□□ -0.31
CAPN1-223	ENST00000533079	SYAP1	Q96A49	352 aa	Predicted RBP	13.13	□□□□□ -0.31
CAPN1-223	ENST00000533079	GBP4	Q96PP9	640 aa		13.13	□□□□□ -0.31
CAPN1-223	ENST00000533079	NUP58	Q9BVL2	599 aa		13.13	□□□□□ -0.31
CAPN1-223	ENST00000533079	MKRN2	Q9H000	416 aa	Known RBP	13.13	□□□□□ -0.31
CAPN1-223	ENST00000533079	CYLD	Q9NQC7	956 aa		13.13	□□□□□ -0.31
CAPN1-223	ENST00000533079	TBC1D7	Q9P0N9	293 aa		13.13	□□□□□ -0.31
CAPN1-223	ENST00000533079	GMIP	Q9P107	970 aa		13.13	□□□□□ -0.31
CAPN1-223	ENST00000533079	CHORDC1	Q9UHD1	332 aa	Predicted RBP	13.13	□□□□□ -0.31
CAPN1-223	ENST00000533079	FBXO10	Q9UK96	956 aa		13.13	□□□□□ -0.31
CAPN1-223	ENST00000533079	CAPN8	A6NHC0	703 aa		13.12	□□□□□ -0.31
CAPN1-223	ENST00000533079	PAPSS1	O43252	624 aa	Predicted RBP	13.12	□□□□□ -0.31
CAPN1-223	ENST00000533079	PCDHGA12	O60330	932 aa		13.12	□□□□□ -0.31
CAPN1-223	ENST00000533079	SYNCRIP	O60506	623 aa	Known RBP	13.12	□□□□□ -0.31
CAPN1-223	ENST00000533079	ZIC2	O95409	532 aa	Predicted RBP	13.12	□□□□□ -0.31
CAPN1-223	ENST00000533079	CISD3	P0C7P0	127 aa		13.12	□□□□□ -0.31
CAPN1-223	ENST00000533079	CDK4	P11802	303 aa		13.12	□□□□□ -0.31
CAPN1-223	ENST00000533079	IDE	P14735	1019 aa		13.12	□□□□□ -0.31
CAPN1-223	ENST00000533079	ACO1	P21399	889 aa	Known RBP	13.12	□□□□□ -0.31
CAPN1-223	ENST00000533079	HNF1B	P35680	557 aa		13.12	□□□□□ -0.31
CAPN1-223	ENST00000533079	ATP5C1	P36542	298 aa	Known RBP	13.12	□□□□□ -0.31
CAPN1-223	ENST00000533079	GRIA4	P48058	902 aa		13.12	□□□□□ -0.31
CAPN1-223	ENST00000533079	CCT8	P50990	548 aa		13.12	□□□□□ -0.31
CAPN1-223	ENST00000533079	BNC1	Q01954	994 aa		13.12	□□□□□ -0.31
CAPN1-223	ENST00000533079	ORC1	Q13415	861 aa		13.12	□□□□□ -0.31
CAPN1-223	ENST00000533079	RRAGB	Q5VZM2	374 aa		13.12	□□□□□ -0.31
CAPN1-223	ENST00000533079	TPGS1	Q6ZTW0	290 aa		13.12	□□□□□ -0.31
CAPN1-223	ENST00000533079	CBWD2	Q8IUF1	395 aa		13.12	□□□□□ -0.31
CAPN1-223	ENST00000533079	C1orf216	Q8TAB5	229 aa		13.12	□□□□□ -0.31
CAPN1-223	ENST00000533079	SCAMP5	Q8TAC9	235 aa		13.12	□□□□□ -0.31
CAPN1-223	ENST00000533079	IGSF8	Q969P0	613 aa		13.12	□□□□□ -0.31
CAPN1-223	ENST00000533079	SIPA1	Q96FS4	1042 aa		13.12	□□□□□ -0.31
CAPN1-223	ENST00000533079	KCNK16	Q96T55	309 aa		13.12	□□□□□ -0.31
CAPN1-223	ENST00000533079	CGRRF1	Q99675	332 aa		13.12	□□□□□ -0.31
CAPN1-223	ENST00000533079	KLF16	Q9BXK1	252 aa	Predicted RBP	13.12	□□□□□ -0.31
CAPN1-223	ENST00000533079	VRTN	Q9H8Y1	702 aa		13.12	□□□□□ -0.31
CAPN1-223	ENST00000533079	HSPBP1	Q9NZL4	362 aa		13.12	□□□□□ -0.31
CAPN1-223	ENST00000533079	MYOF	Q9NZM1	2061 aa		13.11	□□□□□ -0.31
CAPN1-223	ENST00000533079	BPTF	Q12830	3046 aa		13.11	□□□□□ -0.31
CAPN1-223	ENST00000533079	KCNJ18	B7U540	433 aa		13.11	□□□□□ -0.31
CAPN1-223	ENST00000533079	C1QL1	O75973	258 aa		13.11	□□□□□ -0.31
CAPN1-223	ENST00000533079	TNNI1	P19237	187 aa		13.11	□□□□□ -0.31
CAPN1-223	ENST00000533079	GJB2	P29033	226 aa		13.11	□□□□□ -0.31
CAPN1-223	ENST00000533079	CDH8	P55286	799 aa		13.11	□□□□□ -0.31
CAPN1-223	ENST00000533079	PSMD6	Q15008	389 aa		13.11	□□□□□ -0.31
CAPN1-223	ENST00000533079	SF3A1	Q15459	793 aa	Known RBP	13.11	□□□□□ -0.31
CAPN1-223	ENST00000533079	SNRNP35	Q16560	246 aa	Known RBP	13.11	□□□□□ -0.31
CAPN1-223	ENST00000533079	C6orf118	Q5T5N4	469 aa		13.11	□□□□□ -0.31
CAPN1-223	ENST00000533079	LRRC69	Q6ZNQ3	347 aa		13.11	□□□□□ -0.31
CAPN1-223	ENST00000533079	TMPRSS6	Q8IU80	811 aa		13.11	□□□□□ -0.31
CAPN1-223	ENST00000533079	PIP4K2C	Q8TBX8	421 aa		13.11	□□□□□ -0.31
CAPN1-223	ENST00000533079	WBP2	Q969T9	261 aa		13.11	□□□□□ -0.31
CAPN1-223	ENST00000533079	CRELD1	Q96HD1	420 aa		13.11	□□□□□ -0.31
CAPN1-223	ENST00000533079	EPSTI1	Q96J88	318 aa		13.11	□□□□□ -0.31
CAPN1-223	ENST00000533079	MED10	Q9BTT4	135 aa		13.11	□□□□□ -0.31
CAPN1-223	ENST00000533079	CSNK1G1	Q9HCP0	422 aa		13.11	□□□□□ -0.31

Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms