RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 NIPAL1Q6NVV3 410 aa13.68□□□□□ -0.22
USP40-208ENST00000450966 FAM162AQ96A26 154 aa13.68□□□□□ -0.22
USP40-208ENST00000450966 ITPKCQ96DU7 683 aa13.68□□□□□ -0.22
USP40-208ENST00000450966 NSMCE3Q96MG7 304 aa13.68□□□□□ -0.22
USP40-208ENST00000450966 PIDD1Q9HB75 910 aa13.68□□□□□ -0.22
USP40-208ENST00000450966 AAASQ9NRG9 546 aa13.68□□□□□ -0.22
USP40-208ENST00000450966 EHD3Q9NZN3 535 aa13.68□□□□□ -0.22
USP40-208ENST00000450966 AP4B1Q9Y6B7 739 aa13.68□□□□□ -0.22
USP40-208ENST00000450966 MANSC4A6NHS7 340 aaPredicted RBP13.68□□□□□ -0.22
USP40-208ENST00000450966 MYO1GB0I1T2 1018 aa13.68□□□□□ -0.22
USP40-208ENST00000450966 ZSCAN9O15535 394 aaPredicted RBP13.68□□□□□ -0.22
USP40-208ENST00000450966 KPNA6O60684 536 aa13.68□□□□□ -0.22
USP40-208ENST00000450966 HUS1O60921 280 aa13.68□□□□□ -0.22
USP40-208ENST00000450966 MYCP01106 439 aaPredicted RBP13.68□□□□□ -0.22
USP40-208ENST00000450966 EFR3AQ14156 821 aa13.68□□□□□ -0.22
USP40-208ENST00000450966 IER5Q5VY09 327 aa13.68□□□□□ -0.22
USP40-208ENST00000450966 ABRAXAS1Q6UWZ7 409 aa13.68□□□□□ -0.22
USP40-208ENST00000450966 C3orf62Q6ZUJ4 267 aa13.68□□□□□ -0.22
USP40-208ENST00000450966 SFRP1Q8N474 314 aa13.68□□□□□ -0.22
USP40-208ENST00000450966 EMILIN2Q9BXX0 1053 aa13.68□□□□□ -0.22
USP40-208ENST00000450966 MAF1Q9H063 256 aa13.68□□□□□ -0.22
USP40-208ENST00000450966 ELOVL6Q9H5J4 265 aa13.68□□□□□ -0.22
USP40-208ENST00000450966 FNDC3AQ9Y2H6 1198 aaKnown RBP13.68□□□□□ -0.22
USP40-208ENST00000450966 MAGEB16A2A368 324 aa13.68□□□□□ -0.22
USP40-208ENST00000450966 CARNS1A5YM72 827 aa13.68□□□□□ -0.22
USP40-208ENST00000450966 NAMPTP43490 491 aa13.68□□□□□ -0.22
USP40-208ENST00000450966 GNG2P59768 71 aa13.68□□□□□ -0.22
USP40-208ENST00000450966 ROR1Q01973 937 aa13.68□□□□□ -0.22
USP40-208ENST00000450966 VAC14Q08AM6 782 aa13.68□□□□□ -0.22
USP40-208ENST00000450966 PDPK2PQ6A1A2 396 aa13.68□□□□□ -0.22
USP40-208ENST00000450966 SCARA5Q6ZMJ2 495 aa13.68□□□□□ -0.22
USP40-208ENST00000450966 EXOC3L1Q86VI1 746 aa13.68□□□□□ -0.22
USP40-208ENST00000450966 DDIASQ8IXT1 998 aa13.68□□□□□ -0.22
USP40-208ENST00000450966 RDM1Q8NG50 284 aa13.68□□□□□ -0.22
USP40-208ENST00000450966 RNF25Q96BH1 459 aaPredicted RBP13.68□□□□□ -0.22
USP40-208ENST00000450966 SIPA1Q96FS4 1042 aa13.68□□□□□ -0.22
USP40-208ENST00000450966 ZNF285Q96NJ3 590 aa13.68□□□□□ -0.22
USP40-208ENST00000450966 CDC42EP4Q9H3Q1 356 aaKnown RBP13.68□□□□□ -0.22
USP40-208ENST00000450966 HEATR9A2RTY3 570 aa13.68□□□□□ -0.22
USP40-208ENST00000450966 FOXN1O15353 648 aa13.68□□□□□ -0.22
USP40-208ENST00000450966 FARP2O94887 1054 aaPredicted RBP13.68□□□□□ -0.22
USP40-208ENST00000450966 IL6P05231 212 aa13.68□□□□□ -0.22
USP40-208ENST00000450966 SMYD1Q8NB12 490 aa13.68□□□□□ -0.22
USP40-208ENST00000450966 ARRDC4Q8NCT1 418 aa13.68□□□□□ -0.22
USP40-208ENST00000450966 FAM45AQ8TCE6 357 aa13.68□□□□□ -0.22
USP40-208ENST00000450966 RBBP8Q99708 897 aa13.68□□□□□ -0.22
USP40-208ENST00000450966 GTF3C4Q9UKN8 822 aa13.68□□□□□ -0.22
USP40-208ENST00000450966 TNS2Q63HR2 1409 aa13.68□□□□□ -0.22
USP40-208ENST00000450966 RRN3P2A6NIE6 340 aa13.67□□□□□ -0.22
USP40-208ENST00000450966 ME2P23368 584 aa13.67□□□□□ -0.22
USP40-208ENST00000450966 VBP1P61758 197 aa13.67□□□□□ -0.22
USP40-208ENST00000450966 ITPRIPL1Q6GPH6 555 aa13.67□□□□□ -0.22
USP40-208ENST00000450966 ERO1BQ86YB8 467 aa13.67□□□□□ -0.22
USP40-208ENST00000450966 BDH2Q9BUT1 245 aa13.67□□□□□ -0.22
USP40-208ENST00000450966 NUAK2Q9H093 628 aa13.67□□□□□ -0.22
USP40-208ENST00000450966 HDHD2Q9H0R4 259 aa13.67□□□□□ -0.22
USP40-208ENST00000450966 RAB26Q9ULW5 256 aa13.67□□□□□ -0.22
USP40-208ENST00000450966 PIK3CDO00329 1044 aa13.67□□□□□ -0.22
USP40-208ENST00000450966 PEX1O43933 1283 aa13.67□□□□□ -0.22
USP40-208ENST00000450966 VDRP11473 427 aa13.67□□□□□ -0.22
USP40-208ENST00000450966 CASP1P29466 404 aa13.67□□□□□ -0.22
USP40-208ENST00000450966 CCNFP41002 786 aa13.67□□□□□ -0.22
USP40-208ENST00000450966 RHAGQ02094 409 aa13.67□□□□□ -0.22
USP40-208ENST00000450966 FAPQ12884 760 aa13.67□□□□□ -0.22
USP40-208ENST00000450966 KNOP1Q1ED39 458 aaKnown RBP13.67□□□□□ -0.22
USP40-208ENST00000450966 RWDD4Q6NW29 188 aaKnown RBP13.67□□□□□ -0.22
USP40-208ENST00000450966 FAM13CQ8NE31 585 aa13.67□□□□□ -0.22
USP40-208ENST00000450966 KRT35Q92764 455 aa13.67□□□□□ -0.22
USP40-208ENST00000450966 MRPL4Q9BYD3 311 aaKnown RBP13.67□□□□□ -0.22
USP40-208ENST00000450966 SHCBP1LQ9BZQ2 653 aa13.67□□□□□ -0.22
USP40-208ENST00000450966 TRIM64A6NGJ6 449 aa13.67□□□□□ -0.22
USP40-208ENST00000450966 TRIM64BA6NI03 449 aa13.67□□□□□ -0.22
USP40-208ENST00000450966 RIPK2O43353 540 aa13.67□□□□□ -0.22
USP40-208ENST00000450966 BNIP3LO60238 219 aa13.67□□□□□ -0.22
USP40-208ENST00000450966 RTN2O75298 545 aa13.67□□□□□ -0.22
USP40-208ENST00000450966 CPA3P15088 417 aa13.67□□□□□ -0.22
USP40-208ENST00000450966 PSMA2P25787 234 aa13.67□□□□□ -0.22
USP40-208ENST00000450966 ADSSP30520 456 aa13.67□□□□□ -0.22
USP40-208ENST00000450966 PEX3P56589 373 aa13.67□□□□□ -0.22
USP40-208ENST00000450966 FASTKD1Q53R41 847 aaKnown RBP13.67□□□□□ -0.22
USP40-208ENST00000450966 GLYCTKQ8IVS8 523 aa13.67□□□□□ -0.22
USP40-208ENST00000450966 FBXW8Q8N3Y1 598 aa13.67□□□□□ -0.22
USP40-208ENST00000450966 USP13Q92995 863 aaPredicted RBP13.67□□□□□ -0.22
USP40-208ENST00000450966 CDH19Q9H159 772 aa13.67□□□□□ -0.22
USP40-208ENST00000450966 IMPAD1Q9NX62 359 aa13.67□□□□□ -0.22
USP40-208ENST00000450966 KLHL18O94889 574 aa13.67□□□□□ -0.22
USP40-208ENST00000450966 TMEM253P0C7T8 217 aa13.67□□□□□ -0.22
USP40-208ENST00000450966 ITIH1P19827 911 aa13.67□□□□□ -0.22
USP40-208ENST00000450966 KLRC1P26715 233 aa13.67□□□□□ -0.22
USP40-208ENST00000450966 NAALADL2Q58DX5 795 aa13.67□□□□□ -0.22
USP40-208ENST00000450966 ZNF57Q68EA5 555 aaPredicted RBP13.67□□□□□ -0.22
USP40-208ENST00000450966 RIPOR1Q6ZS17 1223 aa13.67□□□□□ -0.22
USP40-208ENST00000450966 NSUN4Q96CB9 384 aaKnown RBP13.67□□□□□ -0.22
USP40-208ENST00000450966 FRMD8Q9BZ67 464 aaPredicted RBP13.67□□□□□ -0.22
USP40-208ENST00000450966 ILKAPQ9H0C8 392 aaPredicted RBP13.67□□□□□ -0.22
USP40-208ENST00000450966 EPB41L1Q9H4G0 881 aa13.67□□□□□ -0.22
USP40-208ENST00000450966 GBA2Q9HCG7 927 aaPredicted RBP13.67□□□□□ -0.22
USP40-208ENST00000450966 DYRK4Q9NR20 520 aa13.67□□□□□ -0.22
USP40-208ENST00000450966 POLIQ9UNA4 740 aa13.67□□□□□ -0.22
USP40-208ENST00000450966 DDX3XO00571 662 aaKnown RBP eCLIP13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms