RNA–Protein interactions for RNA: ENST00000409915.8

SF3B1-202, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2 BASIC

Gene SF3B1, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-202ENST00000409915 ZFYVE21Q9BQ24 234 aa4.84□□□□□ -1.63
SF3B1-202ENST00000409915 TXLNGYQ9BZA5 131 aa4.84□□□□□ -1.63
SF3B1-202ENST00000409915 TRIM7Q9C029 511 aa4.84□□□□□ -1.63
SF3B1-202ENST00000409915 UNKQ9C0B0 810 aaKnown RBP4.84□□□□□ -1.63
SF3B1-202ENST00000409915 ZDHHC5Q9C0B5 715 aa4.84□□□□□ -1.63
SF3B1-202ENST00000409915 WNT8AQ9H1J5 351 aa4.84□□□□□ -1.63
SF3B1-202ENST00000409915 CRISPLD1Q9H336 500 aa4.84□□□□□ -1.63
SF3B1-202ENST00000409915 GHITMQ9H3K2 345 aa4.84□□□□□ -1.63
SF3B1-202ENST00000409915 RNPEPQ9H4A4 650 aa4.84□□□□□ -1.63
SF3B1-202ENST00000409915 GP6Q9HCN6 339 aa4.84□□□□□ -1.63
SF3B1-202ENST00000409915 SETD4Q9NVD3 440 aa4.84□□□□□ -1.63
SF3B1-202ENST00000409915 LMCD1Q9NZU5 365 aa4.84□□□□□ -1.63
SF3B1-202ENST00000409915 MTRRQ9UBK8 725 aa4.84□□□□□ -1.63
SF3B1-202ENST00000409915 TJP2Q9UDY2 1190 aa4.84□□□□□ -1.63
SF3B1-202ENST00000409915 TBK1Q9UHD2 729 aa4.84□□□□□ -1.63
SF3B1-202ENST00000409915 XPO7Q9UIA9 1087 aaKnown RBP4.84□□□□□ -1.63
SF3B1-202ENST00000409915 ADAM21Q9UKJ8 722 aa4.84□□□□□ -1.63
SF3B1-202ENST00000409915 ZNF215Q9UL58 517 aaPredicted RBP4.84□□□□□ -1.63
SF3B1-202ENST00000409915 MROH7Q68CQ1 1323 aa4.83□□□□□ -1.64
SF3B1-202ENST00000409915 EMSYQ7Z589 1322 aa4.83□□□□□ -1.64
SF3B1-202ENST00000409915 CYP3A7-CYP3A51PA0A087WV96 503 aa4.83□□□□□ -1.64
SF3B1-202ENST00000409915 SYCE3A1L190 88 aa4.83□□□□□ -1.64
SF3B1-202ENST00000409915 C17orf102A2RUQ5 167 aa4.83□□□□□ -1.64
SF3B1-202ENST00000409915 LCHNA4D1U4 455 aa4.83□□□□□ -1.64
SF3B1-202ENST00000409915 LGALS16A8MUM7 142 aa4.83□□□□□ -1.64
SF3B1-202ENST00000409915 H3BQV1 296 aa4.83□□□□□ -1.64
SF3B1-202ENST00000409915 FOXN3O00409 490 aaPredicted RBP4.83□□□□□ -1.64
SF3B1-202ENST00000409915 RTCAO00442 366 aaKnown RBP4.83□□□□□ -1.64
SF3B1-202ENST00000409915 MAP2K7O14733 419 aa4.83□□□□□ -1.64
SF3B1-202ENST00000409915 KIAA0355O15063 1070 aa4.83□□□□□ -1.64
SF3B1-202ENST00000409915 SHOXO15266 292 aa4.83□□□□□ -1.64
SF3B1-202ENST00000409915 PSMD10O75832 226 aa4.83□□□□□ -1.64
SF3B1-202ENST00000409915 SMNDC1O75940 238 aaKnown RBP eCLIP4.83□□□□□ -1.641e-11■■■■□ 23.3
SF3B1-202ENST00000409915 ECEL1O95672 775 aa4.83□□□□□ -1.64
SF3B1-202ENST00000409915 GHRHP01286 108 aa4.83□□□□□ -1.64
SF3B1-202ENST00000409915 FESP07332 822 aa4.83□□□□□ -1.64
SF3B1-202ENST00000409915 HNRNPLP14866 589 aaKnown RBP eCLIP4.83□□□□□ -1.64
SF3B1-202ENST00000409915 ALOX12P18054 663 aa4.83□□□□□ -1.64
SF3B1-202ENST00000409915 CD33P20138 364 aa4.83□□□□□ -1.64
SF3B1-202ENST00000409915 CYP3A7P24462 503 aa4.83□□□□□ -1.64
SF3B1-202ENST00000409915 MTNR1BP49286 362 aa4.83□□□□□ -1.64
SF3B1-202ENST00000409915 TOB1P50616 345 aaPredicted RBP4.83□□□□□ -1.64
SF3B1-202ENST00000409915 USP11P51784 963 aa4.83□□□□□ -1.64
SF3B1-202ENST00000409915 ZNF132P52740 706 aa4.83□□□□□ -1.64
SF3B1-202ENST00000409915 EPHB4P54760 987 aa4.83□□□□□ -1.64
SF3B1-202ENST00000409915 CCL23P55773 120 aa4.83□□□□□ -1.64
SF3B1-202ENST00000409915 SNRPNP63162 240 aaKnown RBP4.83□□□□□ -1.64
SF3B1-202ENST00000409915 PRKCEQ02156 737 aa4.83□□□□□ -1.64
SF3B1-202ENST00000409915 IFT88Q13099 833 aa4.83□□□□□ -1.64
SF3B1-202ENST00000409915 SCARB2Q14108 478 aa4.83□□□□□ -1.64
SF3B1-202ENST00000409915 IQCB1Q15051 598 aa4.83□□□□□ -1.64
SF3B1-202ENST00000409915 SURF1Q15526 300 aa4.83□□□□□ -1.64
SF3B1-202ENST00000409915 ZNF174Q15697 407 aa4.83□□□□□ -1.64
SF3B1-202ENST00000409915 SMAD1Q15797 465 aaKnown RBP4.83□□□□□ -1.64
SF3B1-202ENST00000409915 CALCRLQ16602 461 aa4.83□□□□□ -1.64
SF3B1-202ENST00000409915 PTGISQ16647 500 aa4.83□□□□□ -1.64
SF3B1-202ENST00000409915 ARHGAP44Q17R89 818 aa4.83□□□□□ -1.64
SF3B1-202ENST00000409915 TIGD6Q17RP2 521 aa4.83□□□□□ -1.64
SF3B1-202ENST00000409915 Q4G0T1 1027 aa4.83□□□□□ -1.64
SF3B1-202ENST00000409915 EFHC2Q5JST6 749 aa4.83□□□□□ -1.64
SF3B1-202ENST00000409915 FBXO47Q5MNV8 452 aa4.83□□□□□ -1.64
SF3B1-202ENST00000409915 TTC38Q5R3I4 469 aa4.83□□□□□ -1.64
SF3B1-202ENST00000409915 NCAPH2Q6IBW4 605 aa4.83□□□□□ -1.64
SF3B1-202ENST00000409915 NFRKBQ6P4R8 1299 aa4.83□□□□□ -1.64
SF3B1-202ENST00000409915 MOXD1Q6UVY6 613 aa4.83□□□□□ -1.64
SF3B1-202ENST00000409915 ABHD15Q6UXT9 468 aa4.83□□□□□ -1.64
SF3B1-202ENST00000409915 FAM47EQ6ZV65 393 aa4.83□□□□□ -1.64
SF3B1-202ENST00000409915 BTN2A1Q7KYR7 527 aa4.83□□□□□ -1.64
SF3B1-202ENST00000409915 MIER3Q7Z3K6 550 aa4.83□□□□□ -1.64
SF3B1-202ENST00000409915 SPATA21Q7Z572 469 aa4.83□□□□□ -1.64
SF3B1-202ENST00000409915 KIAA1328Q86T90 577 aa4.83□□□□□ -1.64
SF3B1-202ENST00000409915 C12orf40Q86WS4 652 aa4.83□□□□□ -1.64
SF3B1-202ENST00000409915 MCATQ8IVS2 390 aaKnown RBP4.83□□□□□ -1.64
SF3B1-202ENST00000409915 MFN1Q8IWA4 741 aa4.83□□□□□ -1.64
SF3B1-202ENST00000409915 PPIL6Q8IXY8 311 aa4.83□□□□□ -1.64
SF3B1-202ENST00000409915 ZNF610Q8N9Z0 462 aa4.83□□□□□ -1.64
SF3B1-202ENST00000409915 OR8K1Q8NGG5 319 aa4.83□□□□□ -1.64
SF3B1-202ENST00000409915 PCDH19Q8TAB3 1148 aa4.83□□□□□ -1.64
SF3B1-202ENST00000409915 PUM2Q8TB72 1066 aaKnown RBP eCLIP4.83□□□□□ -1.64
SF3B1-202ENST00000409915 BAHD1Q8TBE0 780 aaPredicted RBP4.83□□□□□ -1.64
SF3B1-202ENST00000409915 ZFAND2BQ8WV99 257 aa4.83□□□□□ -1.64
SF3B1-202ENST00000409915 RIN2Q8WYP3 895 aaPredicted RBP4.83□□□□□ -1.64
SF3B1-202ENST00000409915 ATP6V0A1Q93050 837 aa4.83□□□□□ -1.64
SF3B1-202ENST00000409915 CCDC74BQ96LY2 380 aa4.83□□□□□ -1.64
SF3B1-202ENST00000409915 TOX2Q96NM4 488 aa4.83□□□□□ -1.64
SF3B1-202ENST00000409915 ACAP3Q96P50 834 aa4.83□□□□□ -1.64
SF3B1-202ENST00000409915 LBHD1Q9BQE6 289 aaPredicted RBP4.83□□□□□ -1.64
SF3B1-202ENST00000409915 SH2D3AQ9BRG2 576 aa4.83□□□□□ -1.64
SF3B1-202ENST00000409915 PYM1Q9BRP8 204 aaKnown RBP4.83□□□□□ -1.64
SF3B1-202ENST00000409915 DESI2Q9BSY9 194 aa4.83□□□□□ -1.64
SF3B1-202ENST00000409915 FUCA2Q9BTY2 467 aa4.83□□□□□ -1.64
SF3B1-202ENST00000409915 TEKT3Q9BXF9 490 aa4.83□□□□□ -1.64
SF3B1-202ENST00000409915 FTOQ9C0B1 505 aaKnown RBP eCLIP4.83□□□□□ -1.64
SF3B1-202ENST00000409915 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP4.83□□□□□ -1.64
SF3B1-202ENST00000409915 QRSL1Q9H0R6 528 aaKnown RBP4.83□□□□□ -1.64
SF3B1-202ENST00000409915 FOXP1Q9H334 677 aaPredicted RBP4.83□□□□□ -1.64
SF3B1-202ENST00000409915 HIPK3Q9H422 1215 aa4.83□□□□□ -1.64
SF3B1-202ENST00000409915 AZI2Q9H6S1 392 aa4.83□□□□□ -1.64
SF3B1-202ENST00000409915 PNPLA8Q9NP80 782 aa4.83□□□□□ -1.64
SF3B1-202ENST00000409915 KCNMB3Q9NPA1 279 aa4.83□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms